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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 392 |
| AciI | CCGC | 1 cut(s) | 396 |
| AclWI | GGATC | 1 cut(s) | 335 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 418, 422, 439 |
| AgsI | TTSAA | 2 cut(s) | 160, 500 |
| AjnI | CCWGG | 1 cut(s) | 469 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AleI | CACNNNNGTG | 1 cut(s) | 150 |
| AluBI | AGCT | 1 cut(s) | 180 |
| AluI | AGCT | 1 cut(s) | 180 |
| Alw26I | GTCTC | 2 cut(s) | 45, 76 |
| AlwI | GGATC | 1 cut(s) | 335 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 434 |
| AoxI | GGCC | 1 cut(s) | 521 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspA2I | CCTAGG | 1 cut(s) | 416 |
| AspLEI | GCGC | 1 cut(s) | 428 |
| AsuHPI | GGTGA | 3 cut(s) | 470, 478, 485 |
| AvrII | CCTAGG | 1 cut(s) | 416 |
| BanI | GGYRCC | 1 cut(s) | 392 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| BccI | CCATC | 2 cut(s) | 455, 459 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciT130I | CCWGG | 1 cut(s) | 471 |
| BcoDI | GTCTC | 2 cut(s) | 45, 76 |
| BfaI | CTAG | 2 cut(s) | 122, 417 |
| BfmI | CTRYAG | 1 cut(s) | 175 |
| BlnI | CCTAGG | 1 cut(s) | 416 |
| Bme1390I | CCNGG | 1 cut(s) | 471 |
| BmiI | GGNNCC | 2 cut(s) | 394, 466 |
| BmrFI | CCNGG | 1 cut(s) | 471 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bpu10I | CCTNAGC | 1 cut(s) | 518 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaI | GGTCTC | 2 cut(s) | 45, 76 |
| BsaJI | CCNNGG | 4 cut(s) | 388, 416, 438, 469 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 418, 422, 439 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| BseBI | CCWGG | 1 cut(s) | 471 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 4 cut(s) | 388, 416, 438, 469 |
| BseGI | GGATG | 2 cut(s) | 22, 384 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 418, 422, 439 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 1 cut(s) | 532 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BshFI | GGCC | 1 cut(s) | 523 |
| BshNI | GGYRCC | 1 cut(s) | 392 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BslFI | GGGAC | 1 cut(s) | 416 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 418, 422, 439 |
| BsmAI | GTCTC | 2 cut(s) | 45, 76 |
| BsmFI | GGGAC | 1 cut(s) | 416 |
| BsnI | GGCC | 1 cut(s) | 523 |
| Bso31I | GGTCTC | 2 cut(s) | 45, 76 |
| Bsp143I | GATC | 3 cut(s) | 228, 327, 343 |
| Bsp19I | CCATGG | 1 cut(s) | 438 |
| BspACI | CCGC | 1 cut(s) | 396 |
| BspANI | GGCC | 1 cut(s) | 523 |
| BspCNI | CTCAG | 1 cut(s) | 531 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 394, 466 |
| BspPI | GGATC | 1 cut(s) | 335 |
| BspT107I | GGYRCC | 1 cut(s) | 392 |
| BspTNI | GGTCTC | 2 cut(s) | 45, 76 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 4 cut(s) | 388, 416, 438, 469 |
| BssMI | GATC | 3 cut(s) | 228, 327, 343 |
| BssT1I | CCWWGG | 3 cut(s) | 388, 416, 438 |
| Bst2UI | CCWGG | 1 cut(s) | 471 |
| Bst4CI | ACNGT | 1 cut(s) | 289 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 434 |
| BstC8I | GCNNGC | 1 cut(s) | 424 |
| BstDEI | CTNAG | 3 cut(s) | 294, 518, 585 |
| BstDSI | CCRYGG | 1 cut(s) | 438 |
| BstF5I | GGATG | 2 cut(s) | 22, 384 |
| BstHHI | GCGC | 1 cut(s) | 428 |
| BstKTI | GATC | 3 cut(s) | 231, 330, 346 |
| BstMAI | GTCTC | 2 cut(s) | 45, 76 |
| BstMBI | GATC | 3 cut(s) | 228, 327, 343 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 434, 553 |
| BstNI | CCWGG | 1 cut(s) | 471 |
| BstSCI | CCNGG | 1 cut(s) | 469 |
| BstSFI | CTRYAG | 1 cut(s) | 175 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuRI | GGCC | 1 cut(s) | 523 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 438 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 22, 384 |
| Cac8I | GCNNGC | 1 cut(s) | 424 |
| CaiI | CAGNNNCTG | 1 cut(s) | 434 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 428 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 2 cut(s) | 436, 523 |
| CviAII | CATG | 4 cut(s) | 341, 377, 439, 455 |
| CviJI | RGCY | 9 cut(s) | 64, 141, 180, 415, 422, 465, 523, 556, 577 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 141, 180, 415, 422, 465, 523, 556, 577 |
| DdeI | CTNAG | 3 cut(s) | 294, 518, 585 |
| DpnI | GATC | 3 cut(s) | 230, 329, 345 |
| DpnII | GATC | 3 cut(s) | 228, 327, 343 |
| Eco130I | CCWWGG | 3 cut(s) | 388, 416, 438 |
| Eco147I | AGGCCT | 1 cut(s) | 523 |
| Eco31I | GGTCTC | 2 cut(s) | 45, 76 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoRII | CCWGG | 1 cut(s) | 469 |
| EcoT14I | CCWWGG | 3 cut(s) | 388, 416, 438 |
| ErhI | CCWWGG | 3 cut(s) | 388, 416, 438 |
| FaeI | CATG | 4 cut(s) | 344, 380, 442, 458 |
| FaqI | GGGAC | 1 cut(s) | 416 |
| FatI | CATG | 4 cut(s) | 340, 376, 438, 454 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 29, 371 |
| FspBI | CTAG | 2 cut(s) | 122, 417 |
| GlaI | GCGC | 1 cut(s) | 427 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeIII | GGCC | 1 cut(s) | 523 |
| HgaI | GACGC | 2 cut(s) | 436, 523 |
| HhaI | GCGC | 1 cut(s) | 428 |
| Hin1II | CATG | 4 cut(s) | 344, 380, 442, 458 |
| Hin6I | GCGC | 1 cut(s) | 426 |
| HinP1I | GCGC | 1 cut(s) | 426 |
| HinfI | GANTC | 5 cut(s) | 4, 20, 104, 256, 306 |
| HphI | GGTGA | 3 cut(s) | 470, 478, 485 |
| Hpy166II | GTNNAC | 1 cut(s) | 406 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 513 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 170, 341 |
| Hpy8I | GTNNAC | 1 cut(s) | 406 |
| HpyAV | CCTTC | 3 cut(s) | 41, 54, 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 289 |
| HpyCH4V | TGCA | 3 cut(s) | 281, 320, 482 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 434, 553 |
| HpyF3I | CTNAG | 3 cut(s) | 294, 518, 585 |
| Hsp92II | CATG | 4 cut(s) | 344, 380, 442, 458 |
| HspAI | GCGC | 1 cut(s) | 426 |
| Kzo9I | GATC | 3 cut(s) | 228, 327, 343 |
| LmnI | GCTCC | 3 cut(s) | 30, 470, 568 |
| MaeI | CTAG | 2 cut(s) | 122, 417 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 3 cut(s) | 230, 329, 345 |
| MboI | GATC | 3 cut(s) | 228, 327, 343 |
| MboII | GAAGA | 2 cut(s) | 92, 265 |
| MluCI | AATT | 1 cut(s) | 212 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 2 cut(s) | 152, 409 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 150, 456, 459 |
| MspR9I | CCNGG | 1 cut(s) | 471 |
| MvaI | CCWGG | 1 cut(s) | 471 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 434, 553 |
| NcoI | CCATGG | 1 cut(s) | 438 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 228, 327, 343 |
| NlaIII | CATG | 4 cut(s) | 344, 380, 442, 458 |
| NlaIV | GGNNCC | 2 cut(s) | 394, 466 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| OliI | CACNNNNGTG | 1 cut(s) | 150 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 523 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 20, 306 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| Psp6I | CCWGG | 1 cut(s) | 469 |
| PspGI | CCWGG | 1 cut(s) | 469 |
| PspN4I | GGNNCC | 2 cut(s) | 394, 466 |
| PstNI | CAGNNNCTG | 1 cut(s) | 434 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 150, 456, 459 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 3 cut(s) | 228, 327, 343 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| ScrFI | CCNGG | 1 cut(s) | 471 |
| SetI | ASST | 4 cut(s) | 123, 182, 269, 475 |
| SfcI | CTRYAG | 1 cut(s) | 175 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 150, 456, 459 |
| Sse9I | AATT | 1 cut(s) | 212 |
| SseBI | AGGCCT | 1 cut(s) | 523 |
| SsiI | CCGC | 1 cut(s) | 396 |
| SspMI | CTAG | 2 cut(s) | 122, 417 |
| StuI | AGGCCT | 1 cut(s) | 523 |
| StyD4I | CCNGG | 1 cut(s) | 469 |
| StyI | CCWWGG | 3 cut(s) | 388, 416, 438 |
| TaaI | ACNGT | 1 cut(s) | 289 |
| TaqI | TCGA | 3 cut(s) | 78, 304, 309 |
| TasI | AATT | 1 cut(s) | 212 |
| TfiI | GAWTC | 2 cut(s) | 20, 306 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 329, 374 |
| TspGWI | ACGGA | 3 cut(s) | 89, 340, 391 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 419, 458 |
| XmaJI | CCTAGG | 1 cut(s) | 416 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 122, 417 |