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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 644 |
| AccI | GTMKAC | 1 cut(s) | 193 |
| AccII | CGCG | 2 cut(s) | 226, 348 |
| AciI | CCGC | 7 cut(s) | 71, 161, 226, 574, 587, 738, 741 |
| AclWI | GGATC | 6 cut(s) | 171, 185, 192, 222, 229, 369 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 2 cut(s) | 140, 363 |
| AcyI | GRCGYC | 3 cut(s) | 230, 523, 641 |
| AdeI | CACNNNGTG | 1 cut(s) | 65 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 80, 239, 631 |
| AgeI | ACCGGT | 1 cut(s) | 196 |
| AjnI | CCWGG | 2 cut(s) | 247, 397 |
| AluBI | AGCT | 2 cut(s) | 129, 145 |
| AluI | AGCT | 2 cut(s) | 129, 145 |
| Alw21I | GWGCWC | 2 cut(s) | 131, 308 |
| Alw26I | GTCTC | 2 cut(s) | 292, 760 |
| AlwI | GGATC | 6 cut(s) | 171, 185, 192, 222, 229, 369 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 3 cut(s) | 418, 427, 696 |
| AsiGI | ACCGGT | 1 cut(s) | 196 |
| AspA2I | CCTAGG | 1 cut(s) | 233 |
| AspLEI | GCGC | 1 cut(s) | 348 |
| AsuHPI | GGTGA | 1 cut(s) | 662 |
| AsuNHI | GCTAGC | 1 cut(s) | 11 |
| AvrII | CCTAGG | 1 cut(s) | 233 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 131 |
| BauI | CACGAG | 1 cut(s) | 591 |
| Bbv12I | GWGCWC | 2 cut(s) | 131, 308 |
| BbvI | GCAGC | 3 cut(s) | 430, 439, 683 |
| BccI | CCATC | 7 cut(s) | 73, 260, 400, 530, 557, 707, 775 |
| BceAI | ACGGC | 1 cut(s) | 734 |
| BciT130I | CCWGG | 2 cut(s) | 249, 399 |
| BcoDI | GTCTC | 2 cut(s) | 292, 760 |
| BfaI | CTAG | 3 cut(s) | 12, 62, 234 |
| BfmI | CTRYAG | 1 cut(s) | 609 |
| BisI | GCNGC | 6 cut(s) | 419, 428, 588, 697, 739, 742 |
| BlnI | CCTAGG | 1 cut(s) | 233 |
| BlsI | GCNGC | 6 cut(s) | 420, 429, 589, 698, 740, 743 |
| Bme1390I | CCNGG | 2 cut(s) | 249, 399 |
| BmiI | GGNNCC | 2 cut(s) | 245, 396 |
| BmrFI | CCNGG | 2 cut(s) | 249, 399 |
| BmrI | ACTGGG | 2 cut(s) | 361, 667 |
| BmsI | GCATC | 1 cut(s) | 607 |
| BmtI | GCTAGC | 1 cut(s) | 15 |
| BmuI | ACTGGG | 2 cut(s) | 361, 667 |
| BpmI | CTGGAG | 1 cut(s) | 420 |
| BsaHI | GRCGYC | 3 cut(s) | 230, 523, 641 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 6 cut(s) | 74, 132, 233, 247, 248, 625 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 80, 239, 631 |
| Bse118I | RCCGGY | 1 cut(s) | 196 |
| Bse1I | ACTGG | 5 cut(s) | 356, 437, 487, 583, 662 |
| Bse3DI | GCAATG | 2 cut(s) | 6, 759 |
| BseBI | CCWGG | 2 cut(s) | 249, 399 |
| BseDI | CCNNGG | 6 cut(s) | 74, 132, 233, 247, 248, 625 |
| BseGI | GGATG | 6 cut(s) | 84, 90, 271, 622, 722, 786 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 80, 239, 631 |
| BseMI | GCAATG | 2 cut(s) | 6, 759 |
| BseMII | CTCAG | 2 cut(s) | 287, 504 |
| BseNI | ACTGG | 5 cut(s) | 356, 437, 487, 583, 662 |
| BseXI | GCAGC | 3 cut(s) | 430, 439, 683 |
| BsgI | GTGCAG | 1 cut(s) | 463 |
| Bsh1236I | CGCG | 2 cut(s) | 226, 348 |
| Bsh1285I | CGRYCG | 1 cut(s) | 197 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BshTI | ACCGGT | 1 cut(s) | 196 |
| BsiEI | CGRYCG | 1 cut(s) | 197 |
| BsiHKAI | GWGCWC | 2 cut(s) | 131, 308 |
| BsiSI | CCGG | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 80, 239, 631 |
| BsmAI | GTCTC | 2 cut(s) | 292, 760 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 2 cut(s) | 131, 308 |
| BspACI | CCGC | 7 cut(s) | 71, 161, 226, 574, 587, 738, 741 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 2 cut(s) | 288, 505 |
| BspFNI | CGCG | 2 cut(s) | 226, 348 |
| BspLI | GGNNCC | 2 cut(s) | 245, 396 |
| BspOI | GCTAGC | 1 cut(s) | 15 |
| BspPI | GGATC | 6 cut(s) | 171, 185, 192, 222, 229, 369 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 2 cut(s) | 6, 759 |
| BsrFI | RCCGGY | 1 cut(s) | 196 |
| BsrI | ACTGG | 5 cut(s) | 356, 437, 487, 583, 662 |
| BssAI | RCCGGY | 1 cut(s) | 196 |
| BssECI | CCNNGG | 6 cut(s) | 74, 132, 233, 247, 248, 625 |
| BssNI | GRCGYC | 3 cut(s) | 230, 523, 641 |
| BssSI | CACGAG | 1 cut(s) | 591 |
| BssT1I | CCWWGG | 4 cut(s) | 74, 132, 233, 625 |
| Bst2BI | CACGAG | 1 cut(s) | 591 |
| Bst2UI | CCWGG | 2 cut(s) | 249, 399 |
| Bst4CI | ACNGT | 4 cut(s) | 303, 386, 454, 777 |
| Bst6I | CTCTTC | 1 cut(s) | 447 |
| BstACI | GRCGYC | 3 cut(s) | 230, 523, 641 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 622 |
| BstDEI | CTNAG | 2 cut(s) | 296, 513 |
| BstF5I | GGATG | 6 cut(s) | 84, 90, 271, 622, 722, 786 |
| BstFNI | CGCG | 2 cut(s) | 226, 348 |
| BstHHI | GCGC | 1 cut(s) | 348 |
| BstMAI | GTCTC | 2 cut(s) | 292, 760 |
| BstMCI | CGRYCG | 1 cut(s) | 197 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 104, 424, 427, 486, 558 |
| BstNI | CCWGG | 2 cut(s) | 249, 399 |
| BstSCI | CCNGG | 2 cut(s) | 247, 397 |
| BstSFI | CTRYAG | 1 cut(s) | 609 |
| BstUI | CGCG | 2 cut(s) | 226, 348 |
| BstV1I | GCAGC | 3 cut(s) | 430, 439, 683 |
| BstX2I | RGATCY | 1 cut(s) | 214 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 139 |
| BstYI | RGATCY | 1 cut(s) | 214 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgZI | GCGATG | 1 cut(s) | 576 |
| BtsCI | GGATG | 6 cut(s) | 84, 90, 271, 622, 722, 786 |
| BtsIMutI | CAGTG | 2 cut(s) | 430, 480 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 622 |
| CfoI | GCGC | 1 cut(s) | 348 |
| Cfr10I | RCCGGY | 1 cut(s) | 196 |
| CseI | GACGC | 2 cut(s) | 238, 512 |
| CspAI | ACCGGT | 1 cut(s) | 196 |
| CviAII | CATG | 2 cut(s) | 545, 700 |
| DdeI | CTNAG | 2 cut(s) | 296, 513 |
| DraIII | CACNNNGTG | 1 cut(s) | 65 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 447 |
| EarI | CTCTTC | 1 cut(s) | 447 |
| EciI | GGCGGA | 3 cut(s) | 60, 176, 589 |
| Ecl136II | GAGCTC | 1 cut(s) | 129 |
| Eco130I | CCWWGG | 4 cut(s) | 74, 132, 233, 625 |
| Eco24I | GRGCYC | 1 cut(s) | 131 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco53kI | GAGCTC | 1 cut(s) | 129 |
| Eco57I | CTGAAG | 2 cut(s) | 140, 363 |
| EcoICRI | GAGCTC | 1 cut(s) | 129 |
| EcoRII | CCWGG | 2 cut(s) | 247, 397 |
| EcoT14I | CCWWGG | 4 cut(s) | 74, 132, 233, 625 |
| EcoT38I | GRGCYC | 1 cut(s) | 131 |
| ErhI | CCWWGG | 4 cut(s) | 74, 132, 233, 625 |
| FaeI | CATG | 2 cut(s) | 548, 703 |
| FaiI | YATR | 6 cut(s) | 110, 148, 492, 546, 611, 701 |
| FatI | CATG | 2 cut(s) | 544, 699 |
| FblI | GTMKAC | 1 cut(s) | 193 |
| Fnu4HI | GCNGC | 6 cut(s) | 419, 428, 588, 697, 739, 742 |
| FokI | GGATG | 5 cut(s) | 91, 97, 278, 629, 729 |
| FriOI | GRGCYC | 1 cut(s) | 131 |
| Fsp4HI | GCNGC | 6 cut(s) | 419, 428, 588, 697, 739, 742 |
| FspBI | CTAG | 3 cut(s) | 12, 62, 234 |
| GlaI | GCGC | 1 cut(s) | 347 |
| GluI | GCNGC | 6 cut(s) | 419, 428, 588, 697, 739, 742 |
| GsuI | CTGGAG | 1 cut(s) | 420 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 197 |
| HgaI | GACGC | 2 cut(s) | 238, 512 |
| HhaI | GCGC | 1 cut(s) | 348 |
| Hin1I | GRCGYC | 3 cut(s) | 230, 523, 641 |
| Hin1II | CATG | 2 cut(s) | 548, 703 |
| Hin6I | GCGC | 1 cut(s) | 346 |
| HinP1I | GCGC | 1 cut(s) | 346 |
| HincII | GTYRAC | 2 cut(s) | 194, 475 |
| HindII | GTYRAC | 2 cut(s) | 194, 475 |
| HinfI | GANTC | 3 cut(s) | 171, 635, 684 |
| HpaII | CCGG | 1 cut(s) | 197 |
| HphI | GGTGA | 1 cut(s) | 662 |
| Hpy166II | GTNNAC | 2 cut(s) | 194, 475 |
| Hpy188I | TCNGA | 6 cut(s) | 120, 297, 375, 382, 514, 689 |
| Hpy188III | TCNNGA | 4 cut(s) | 175, 507, 527, 593 |
| Hpy8I | GTNNAC | 2 cut(s) | 194, 475 |
| Hpy99I | CGWCG | 2 cut(s) | 528, 643 |
| HpyCH4III | ACNGT | 4 cut(s) | 303, 386, 454, 777 |
| HpyCH4IV | ACGT | 1 cut(s) | 641 |
| HpyCH4V | TGCA | 3 cut(s) | 480, 620, 699 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 104, 424, 427, 486, 558 |
| HpyF3I | CTNAG | 2 cut(s) | 296, 513 |
| HpySE526I | ACGT | 1 cut(s) | 641 |
| Hsp92I | GRCGYC | 3 cut(s) | 230, 523, 641 |
| Hsp92II | CATG | 2 cut(s) | 548, 703 |
| HspAI | GCGC | 1 cut(s) | 346 |
| LmnI | GCTCC | 5 cut(s) | 134, 142, 394, 541, 769 |
| Lsp1109I | GCAGC | 3 cut(s) | 430, 439, 683 |
| LweI | GCATC | 1 cut(s) | 607 |
| MaeI | CTAG | 3 cut(s) | 12, 62, 234 |
| MaeII | ACGT | 1 cut(s) | 641 |
| MaeIII | GTNAC | 1 cut(s) | 448 |
| MboII | GAAGA | 2 cut(s) | 29, 434 |
| MflI | RGATCY | 1 cut(s) | 214 |
| MhlI | GDGCHC | 2 cut(s) | 131, 308 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 180, 693 |
| MmeI | TCCRAC | 2 cut(s) | 392, 667 |
| MnlI | CCTC | 6 cut(s) | 37, 408, 450, 542, 658, 716 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 156 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 1 cut(s) | 197 |
| MspR9I | CCNGG | 2 cut(s) | 249, 399 |
| MvaI | CCWGG | 2 cut(s) | 249, 399 |
| MvnI | CGCG | 2 cut(s) | 226, 348 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 104, 424, 427, 486, 558 |
| NheI | GCTAGC | 1 cut(s) | 11 |
| NlaIII | CATG | 2 cut(s) | 548, 703 |
| NlaIV | GGNNCC | 2 cut(s) | 245, 396 |
| PasI | CCCWGGG | 1 cut(s) | 248 |
| PfeI | GAWTC | 1 cut(s) | 635 |
| PflFI | GACNNNGTC | 1 cut(s) | 683 |
| PinAI | ACCGGT | 1 cut(s) | 196 |
| PkrI | GCNGC | 6 cut(s) | 420, 429, 589, 698, 740, 743 |
| PleI | GAGTC | 2 cut(s) | 179, 692 |
| PpsI | GAGTC | 2 cut(s) | 179, 692 |
| Psp124BI | GAGCTC | 1 cut(s) | 131 |
| Psp6I | CCWGG | 2 cut(s) | 247, 397 |
| PspGI | CCWGG | 2 cut(s) | 247, 397 |
| PspN4I | GGNNCC | 2 cut(s) | 245, 396 |
| PsuI | RGATCY | 1 cut(s) | 214 |
| PsyI | GACNNNGTC | 1 cut(s) | 683 |
| SacI | GAGCTC | 1 cut(s) | 131 |
| SalI | GTCGAC | 1 cut(s) | 192 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 6 cut(s) | 419, 428, 588, 697, 739, 742 |
| SchI | GAGTC | 2 cut(s) | 180, 693 |
| ScrFI | CCNGG | 2 cut(s) | 249, 399 |
| SduI | GDGCHC | 2 cut(s) | 131, 308 |
| SfaNI | GCATC | 1 cut(s) | 607 |
| SfcI | CTRYAG | 1 cut(s) | 609 |
| SsiI | CCGC | 7 cut(s) | 71, 161, 226, 574, 587, 738, 741 |
| SspMI | CTAG | 3 cut(s) | 12, 62, 234 |
| SstI | GAGCTC | 1 cut(s) | 131 |
| StyD4I | CCNGG | 2 cut(s) | 247, 397 |
| StyI | CCWWGG | 4 cut(s) | 74, 132, 233, 625 |
| TaaI | ACNGT | 4 cut(s) | 303, 386, 454, 777 |
| TaiI | ACGT | 1 cut(s) | 644 |
| TaqI | TCGA | 4 cut(s) | 51, 125, 193, 638 |
| TauI | GCSGC | 3 cut(s) | 590, 741, 744 |
| TfiI | GAWTC | 1 cut(s) | 635 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 2 cut(s) | 437, 487 |
| TseI | GCWGC | 3 cut(s) | 418, 427, 696 |
| TspGWI | ACGGA | 1 cut(s) | 696 |
| TspRI | CASTG | 2 cut(s) | 437, 487 |
| Tth111I | GACNNNGTC | 1 cut(s) | 683 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 774 |
| XmaJI | CCTAGG | 1 cut(s) | 233 |
| XmiI | GTMKAC | 1 cut(s) | 193 |
| XspI | CTAG | 3 cut(s) | 12, 62, 234 |
| ZraI | GACGTC | 1 cut(s) | 642 |