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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 309 |
| AccB1I | GGYRCC | 1 cut(s) | 371 |
| AccI | GTMKAC | 1 cut(s) | 447 |
| AciI | CCGC | 1 cut(s) | 351 |
| AclWI | GGATC | 1 cut(s) | 131 |
| AcsI | RAATTY | 1 cut(s) | 533 |
| AcuI | CTGAAG | 1 cut(s) | 498 |
| AcyI | GRCGYC | 2 cut(s) | 372, 391 |
| AfaI | GTAC | 1 cut(s) | 527 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 260, 331, 385, 386 |
| AgsI | TTSAA | 2 cut(s) | 230, 532 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AleI | CACNNNNGTG | 1 cut(s) | 399 |
| AluBI | AGCT | 2 cut(s) | 142, 164 |
| AluI | AGCT | 2 cut(s) | 142, 164 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AlwI | GGATC | 1 cut(s) | 131 |
| AoxI | GGCC | 1 cut(s) | 358 |
| ApeKI | GCWGC | 1 cut(s) | 560 |
| ApoI | RAATTY | 1 cut(s) | 533 |
| AseI | ATTAAT | 1 cut(s) | 147 |
| AspA2I | CCTAGG | 1 cut(s) | 383 |
| AspLEI | GCGC | 2 cut(s) | 267, 374 |
| AspS9I | GGNCC | 1 cut(s) | 311 |
| AsuHPI | GGTGA | 3 cut(s) | 199, 506, 508 |
| AvaII | GGWCC | 1 cut(s) | 311 |
| AvrII | CCTAGG | 1 cut(s) | 383 |
| BanI | GGYRCC | 1 cut(s) | 371 |
| BauI | CACGAG | 1 cut(s) | 127 |
| BbvI | GCAGC | 1 cut(s) | 547 |
| BccI | CCATC | 1 cut(s) | 485 |
| BceAI | ACGGC | 1 cut(s) | 345 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 2 cut(s) | 255, 384 |
| BfmI | CTRYAG | 1 cut(s) | 561 |
| BfoI | RGCGCY | 1 cut(s) | 375 |
| BglII | AGATCT | 1 cut(s) | 37 |
| BisI | GCNGC | 2 cut(s) | 351, 561 |
| BlnI | CCTAGG | 1 cut(s) | 383 |
| BlsI | GCNGC | 2 cut(s) | 352, 562 |
| Bme18I | GGWCC | 1 cut(s) | 311 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 1 cut(s) | 311 |
| BmiI | GGNNCC | 2 cut(s) | 349, 373 |
| BmsI | GCATC | 2 cut(s) | 490, 547 |
| BpuEI | CTTGAG | 1 cut(s) | 382 |
| BsaHI | GRCGYC | 2 cut(s) | 372, 391 |
| BsaJI | CCNNGG | 3 cut(s) | 355, 361, 383 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 260, 331, 385, 386 |
| Bse1I | ACTGG | 1 cut(s) | 121 |
| BseDI | CCNNGG | 3 cut(s) | 355, 361, 383 |
| BseGI | GGATG | 1 cut(s) | 562 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 260, 331, 385, 386 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseNI | ACTGG | 1 cut(s) | 121 |
| BseRI | GAGGAG | 1 cut(s) | 273 |
| BseXI | GCAGC | 1 cut(s) | 547 |
| BshFI | GGCC | 1 cut(s) | 360 |
| BshNI | GGYRCC | 1 cut(s) | 371 |
| BslFI | GGGAC | 2 cut(s) | 306, 402 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 260, 331, 385, 386 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsmBI | CGTCTC | 1 cut(s) | 76 |
| BsmFI | GGGAC | 2 cut(s) | 306, 402 |
| BsnI | GGCC | 1 cut(s) | 360 |
| Bsp143I | GATC | 2 cut(s) | 37, 123 |
| BspACI | CCGC | 1 cut(s) | 351 |
| BspANI | GGCC | 1 cut(s) | 360 |
| BspCNI | CTCAG | 1 cut(s) | 86 |
| BspLI | GGNNCC | 2 cut(s) | 349, 373 |
| BspMAI | CTGCAG | 1 cut(s) | 565 |
| BspPI | GGATC | 1 cut(s) | 131 |
| BspT107I | GGYRCC | 1 cut(s) | 371 |
| BsrI | ACTGG | 1 cut(s) | 121 |
| BssECI | CCNNGG | 3 cut(s) | 355, 361, 383 |
| BssMI | GATC | 2 cut(s) | 37, 123 |
| BssNI | GRCGYC | 2 cut(s) | 372, 391 |
| BssSI | CACGAG | 1 cut(s) | 127 |
| BssT1I | CCWWGG | 2 cut(s) | 355, 383 |
| Bst2BI | CACGAG | 1 cut(s) | 127 |
| BstACI | GRCGYC | 2 cut(s) | 372, 391 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 410 |
| BstDEI | CTNAG | 2 cut(s) | 73, 219 |
| BstDSI | CCRYGG | 1 cut(s) | 361 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 258 |
| BstF5I | GGATG | 1 cut(s) | 562 |
| BstH2I | RGCGCY | 1 cut(s) | 375 |
| BstHHI | GCGC | 2 cut(s) | 267, 374 |
| BstKTI | GATC | 2 cut(s) | 40, 126 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 2 cut(s) | 37, 123 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 271, 410, 473 |
| BstSFI | CTRYAG | 1 cut(s) | 561 |
| BstV1I | GCAGC | 1 cut(s) | 547 |
| BstX2I | RGATCY | 1 cut(s) | 37 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 362 |
| BstYI | RGATCY | 1 cut(s) | 37 |
| BsuRI | GGCC | 1 cut(s) | 360 |
| BtgI | CCRYGG | 1 cut(s) | 361 |
| BtsCI | GGATG | 1 cut(s) | 562 |
| CfoI | GCGC | 2 cut(s) | 267, 374 |
| Cfr13I | GGNCC | 1 cut(s) | 311 |
| CseI | GACGC | 1 cut(s) | 399 |
| Csp6I | GTAC | 1 cut(s) | 526 |
| CviAII | CATG | 3 cut(s) | 173, 341, 461 |
| CviJI | RGCY | 6 cut(s) | 142, 164, 208, 350, 360, 467 |
| CviKI_1 | RGCY | 6 cut(s) | 142, 164, 208, 350, 360, 467 |
| CviQI | GTAC | 1 cut(s) | 526 |
| DdeI | CTNAG | 2 cut(s) | 73, 219 |
| DinI | GGCGCC | 1 cut(s) | 373 |
| DpnI | GATC | 2 cut(s) | 39, 125 |
| DpnII | GATC | 2 cut(s) | 37, 123 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 309 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 309 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 2 cut(s) | 355, 383 |
| Eco47I | GGWCC | 1 cut(s) | 311 |
| Eco57I | CTGAAG | 1 cut(s) | 498 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 258 |
| EcoT14I | CCWWGG | 2 cut(s) | 355, 383 |
| EgeI | GGCGCC | 1 cut(s) | 373 |
| EheI | GGCGCC | 1 cut(s) | 373 |
| ErhI | CCWWGG | 2 cut(s) | 355, 383 |
| Esp3I | CGTCTC | 1 cut(s) | 76 |
| FaeI | CATG | 3 cut(s) | 176, 344, 464 |
| FaiI | YATR | 8 cut(s) | 174, 198, 243, 316, 342, 438, 462, 521 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 456, 488 |
| FaqI | GGGAC | 2 cut(s) | 306, 402 |
| FatI | CATG | 3 cut(s) | 172, 340, 460 |
| FblI | GTMKAC | 1 cut(s) | 447 |
| Fnu4HI | GCNGC | 2 cut(s) | 351, 561 |
| FokI | GGATG | 1 cut(s) | 569 |
| Fsp4HI | GCNGC | 2 cut(s) | 351, 561 |
| FspBI | CTAG | 2 cut(s) | 255, 384 |
| GlaI | GCGC | 2 cut(s) | 266, 373 |
| GluI | GCNGC | 2 cut(s) | 351, 561 |
| HaeII | RGCGCY | 1 cut(s) | 375 |
| HaeIII | GGCC | 1 cut(s) | 360 |
| HgaI | GACGC | 1 cut(s) | 399 |
| HhaI | GCGC | 2 cut(s) | 267, 374 |
| Hin1I | GRCGYC | 2 cut(s) | 372, 391 |
| Hin1II | CATG | 3 cut(s) | 176, 344, 464 |
| Hin6I | GCGC | 2 cut(s) | 265, 372 |
| HinP1I | GCGC | 2 cut(s) | 265, 372 |
| HphI | GGTGA | 3 cut(s) | 199, 506, 508 |
| Hpy166II | GTNNAC | 2 cut(s) | 17, 448 |
| Hpy188I | TCNGA | 1 cut(s) | 215 |
| Hpy188III | TCNNGA | 2 cut(s) | 127, 230 |
| Hpy8I | GTNNAC | 2 cut(s) | 17, 448 |
| HpyAV | CCTTC | 2 cut(s) | 73, 329 |
| HpyCH4IV | ACGT | 2 cut(s) | 304, 444 |
| HpyCH4V | TGCA | 4 cut(s) | 404, 413, 550, 563 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 271, 410, 473 |
| HpyF3I | CTNAG | 2 cut(s) | 73, 219 |
| HpySE526I | ACGT | 2 cut(s) | 304, 444 |
| Hsp92I | GRCGYC | 2 cut(s) | 372, 391 |
| Hsp92II | CATG | 3 cut(s) | 176, 344, 464 |
| HspAI | GCGC | 2 cut(s) | 265, 372 |
| KasI | GGCGCC | 1 cut(s) | 371 |
| Kzo9I | GATC | 2 cut(s) | 37, 123 |
| LmnI | GCTCC | 3 cut(s) | 31, 271, 347 |
| LpnPI | CCDG | 2 cut(s) | 36, 102 |
| Lsp1109I | GCAGC | 1 cut(s) | 547 |
| LweI | GCATC | 2 cut(s) | 490, 547 |
| MaeI | CTAG | 2 cut(s) | 255, 384 |
| MaeII | ACGT | 2 cut(s) | 304, 444 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 2 cut(s) | 39, 125 |
| MboI | GATC | 2 cut(s) | 37, 123 |
| MboII | GAAGA | 5 cut(s) | 202, 491, 494, 497, 500 |
| MflI | RGATCY | 1 cut(s) | 37 |
| MluCI | AATT | 9 cut(s) | 42, 78, 144, 193, 199, 238, 419, 533, 545 |
| Mly113I | GGCGCC | 1 cut(s) | 372 |
| MnlI | CCTC | 6 cut(s) | 123, 226, 251, 254, 390, 422 |
| MseI | TTAA | 4 cut(s) | 45, 147, 203, 422 |
| MslI | CAYNNNNRTG | 2 cut(s) | 399, 555 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 271, 410, 473 |
| NarI | GGCGCC | 1 cut(s) | 372 |
| NdeII | GATC | 2 cut(s) | 37, 123 |
| NlaIII | CATG | 3 cut(s) | 176, 344, 464 |
| NlaIV | GGNNCC | 2 cut(s) | 349, 373 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| OliI | CACNNNNGTG | 1 cut(s) | 399 |
| PkrI | GCNGC | 2 cut(s) | 352, 562 |
| PluTI | GGCGCC | 1 cut(s) | 375 |
| PshBI | ATTAAT | 1 cut(s) | 147 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| PspN4I | GGNNCC | 2 cut(s) | 349, 373 |
| PspPI | GGNCC | 1 cut(s) | 311 |
| PstI | CTGCAG | 1 cut(s) | 565 |
| PsuI | RGATCY | 1 cut(s) | 37 |
| RsaI | GTAC | 1 cut(s) | 527 |
| RsaNI | GTAC | 1 cut(s) | 526 |
| RseI | CAYNNNNRTG | 2 cut(s) | 399, 555 |
| SaqAI | TTAA | 4 cut(s) | 45, 147, 203, 422 |
| SatI | GCNGC | 2 cut(s) | 351, 561 |
| Sau3AI | GATC | 2 cut(s) | 37, 123 |
| Sau96I | GGNCC | 1 cut(s) | 311 |
| SetI | ASST | 9 cut(s) | 25, 65, 134, 144, 166, 256, 307, 418, 447 |
| SfaNI | GCATC | 2 cut(s) | 490, 547 |
| SfcI | CTRYAG | 1 cut(s) | 561 |
| SfoI | GGCGCC | 1 cut(s) | 373 |
| SinI | GGWCC | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 399, 555 |
| SmlI | CTYRAG | 1 cut(s) | 397 |
| SmoI | CTYRAG | 1 cut(s) | 397 |
| Sse9I | AATT | 9 cut(s) | 42, 78, 144, 193, 199, 238, 419, 533, 545 |
| SsiI | CCGC | 1 cut(s) | 351 |
| SspDI | GGCGCC | 1 cut(s) | 371 |
| SspMI | CTAG | 2 cut(s) | 255, 384 |
| StyI | CCWWGG | 2 cut(s) | 355, 383 |
| TaiI | ACGT | 2 cut(s) | 307, 447 |
| TaqI | TCGA | 1 cut(s) | 100 |
| TasI | AATT | 9 cut(s) | 42, 78, 144, 193, 199, 238, 419, 533, 545 |
| TauI | GCSGC | 1 cut(s) | 353 |
| Tru1I | TTAA | 4 cut(s) | 45, 147, 203, 422 |
| Tru9I | TTAA | 4 cut(s) | 45, 147, 203, 422 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 1 cut(s) | 560 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 2 cut(s) | 125, 477 |
| TspGWI | ACGGA | 4 cut(s) | 44, 58, 136, 315 |
| VpaK11BI | GGWCC | 1 cut(s) | 311 |
| VspI | ATTAAT | 1 cut(s) | 147 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 258 |
| XapI | RAATTY | 1 cut(s) | 533 |
| XmaJI | CCTAGG | 1 cut(s) | 383 |
| XmiI | GTMKAC | 1 cut(s) | 447 |
| XspI | CTAG | 2 cut(s) | 255, 384 |