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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 279 |
| Acc36I | ACCTGC | 1 cut(s) | 304 |
| AccII | CGCG | 1 cut(s) | 241 |
| AciI | CCGC | 6 cut(s) | 64, 127, 239, 289, 305, 610 |
| AcoI | YGGCCR | 1 cut(s) | 293 |
| AcsI | RAATTY | 2 cut(s) | 51, 677 |
| AdeI | CACNNNGTG | 1 cut(s) | 155 |
| AgeI | ACCGGT | 1 cut(s) | 143 |
| AgsI | TTSAA | 2 cut(s) | 415, 625 |
| AjiI | CACGTC | 1 cut(s) | 385 |
| AjnI | CCWGG | 2 cut(s) | 46, 178 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 537, 569 |
| AluBI | AGCT | 5 cut(s) | 115, 219, 253, 404, 410 |
| AluI | AGCT | 5 cut(s) | 115, 219, 253, 404, 410 |
| Alw26I | GTCTC | 1 cut(s) | 541 |
| Ama87I | CYCGRG | 1 cut(s) | 368 |
| AoxI | GGCC | 4 cut(s) | 103, 181, 293, 342 |
| ApeKI | GCWGC | 3 cut(s) | 307, 310, 428 |
| ApoI | RAATTY | 2 cut(s) | 51, 677 |
| AsiGI | ACCGGT | 1 cut(s) | 143 |
| AspS9I | GGNCC | 1 cut(s) | 182 |
| AsuHPI | GGTGA | 1 cut(s) | 141 |
| AvaI | CYCGRG | 1 cut(s) | 368 |
| BaeGI | GKGCMC | 1 cut(s) | 160 |
| BalI | TGGCCA | 1 cut(s) | 295 |
| BbsI | GAAGAC | 2 cut(s) | 522, 725 |
| BbvI | GCAGC | 3 cut(s) | 294, 322, 440 |
| BccI | CCATC | 4 cut(s) | 28, 464, 591, 745 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciT130I | CCWGG | 2 cut(s) | 48, 180 |
| BcoDI | GTCTC | 1 cut(s) | 541 |
| BfaI | CTAG | 2 cut(s) | 375, 587 |
| BfmI | CTRYAG | 2 cut(s) | 308, 783 |
| BfuAI | ACCTGC | 1 cut(s) | 304 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 437 |
| BisI | GCNGC | 5 cut(s) | 65, 239, 308, 311, 429 |
| BlsI | GCNGC | 5 cut(s) | 66, 240, 309, 312, 430 |
| Bme1390I | CCNGG | 2 cut(s) | 48, 180 |
| BmeT110I | CYCGRG | 1 cut(s) | 368 |
| BmgBI | CACGTC | 1 cut(s) | 385 |
| BmgT120I | GGNCC | 1 cut(s) | 182 |
| BmrFI | CCNGG | 2 cut(s) | 48, 180 |
| BpiI | GAAGAC | 2 cut(s) | 522, 725 |
| BpmI | CTGGAG | 1 cut(s) | 476 |
| BpuEI | CTTGAG | 2 cut(s) | 323, 390 |
| BsaI | GGTCTC | 1 cut(s) | 541 |
| BsaJI | CCNNGG | 2 cut(s) | 46, 178 |
| BsaWI | WCCGGW | 2 cut(s) | 108, 143 |
| Bse118I | RCCGGY | 2 cut(s) | 60, 143 |
| Bse1I | ACTGG | 1 cut(s) | 493 |
| BseBI | CCWGG | 2 cut(s) | 48, 180 |
| BseDI | CCNNGG | 2 cut(s) | 46, 178 |
| BseGI | GGATG | 4 cut(s) | 221, 459, 487, 561 |
| BseNI | ACTGG | 1 cut(s) | 493 |
| BseSI | GKGCMC | 1 cut(s) | 160 |
| BseXI | GCAGC | 3 cut(s) | 294, 322, 440 |
| Bsh1236I | CGCG | 1 cut(s) | 241 |
| BshFI | GGCC | 4 cut(s) | 105, 183, 295, 344 |
| BshTI | ACCGGT | 1 cut(s) | 143 |
| BsiHKCI | CYCGRG | 1 cut(s) | 368 |
| BsiSI | CCGG | 3 cut(s) | 61, 109, 144 |
| BsmAI | GTCTC | 1 cut(s) | 541 |
| BsnI | GGCC | 4 cut(s) | 105, 183, 295, 344 |
| Bso31I | GGTCTC | 1 cut(s) | 541 |
| BsoBI | CYCGRG | 1 cut(s) | 368 |
| Bsp1286I | GDGCHC | 1 cut(s) | 160 |
| Bsp143I | GATC | 1 cut(s) | 792 |
| BspACI | CCGC | 6 cut(s) | 64, 127, 239, 289, 305, 610 |
| BspANI | GGCC | 4 cut(s) | 105, 183, 295, 344 |
| BspFNI | CGCG | 1 cut(s) | 241 |
| BspHI | TCATGA | 1 cut(s) | 812 |
| BspMAI | CTGCAG | 2 cut(s) | 312, 787 |
| BspMI | ACCTGC | 1 cut(s) | 304 |
| BspTNI | GGTCTC | 1 cut(s) | 541 |
| BsrFI | RCCGGY | 2 cut(s) | 60, 143 |
| BsrI | ACTGG | 1 cut(s) | 493 |
| BssAI | RCCGGY | 2 cut(s) | 60, 143 |
| BssECI | CCNNGG | 2 cut(s) | 46, 178 |
| BssMI | GATC | 1 cut(s) | 792 |
| Bst2UI | CCWGG | 2 cut(s) | 48, 180 |
| Bst4CI | ACNGT | 1 cut(s) | 394 |
| Bst6I | CTCTTC | 2 cut(s) | 164, 189 |
| BstC8I | GCNNGC | 2 cut(s) | 293, 402 |
| BstDEI | CTNAG | 2 cut(s) | 433, 759 |
| BstF5I | GGATG | 4 cut(s) | 221, 459, 487, 561 |
| BstFNI | CGCG | 1 cut(s) | 241 |
| BstKTI | GATC | 1 cut(s) | 795 |
| BstMAI | GTCTC | 1 cut(s) | 541 |
| BstMBI | GATC | 1 cut(s) | 792 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 13, 208, 244, 283, 292, 416, 425, 437, 446 |
| BstNI | CCWGG | 2 cut(s) | 48, 180 |
| BstSCI | CCNGG | 2 cut(s) | 46, 178 |
| BstSFI | CTRYAG | 2 cut(s) | 308, 783 |
| BstSLI | GKGCMC | 1 cut(s) | 160 |
| BstUI | CGCG | 1 cut(s) | 241 |
| BstV1I | GCAGC | 3 cut(s) | 294, 322, 440 |
| BstV2I | GAAGAC | 2 cut(s) | 522, 725 |
| BsuRI | GGCC | 4 cut(s) | 105, 183, 295, 344 |
| BtgZI | GCGATG | 1 cut(s) | 719 |
| BtrI | CACGTC | 1 cut(s) | 385 |
| BtsCI | GGATG | 4 cut(s) | 221, 459, 487, 561 |
| BtsIMutI | CAGTG | 1 cut(s) | 271 |
| BveI | ACCTGC | 1 cut(s) | 304 |
| Cac8I | GCNNGC | 2 cut(s) | 293, 402 |
| CciI | TCATGA | 1 cut(s) | 812 |
| Cfr10I | RCCGGY | 2 cut(s) | 60, 143 |
| Cfr13I | GGNCC | 1 cut(s) | 182 |
| CseI | GACGC | 1 cut(s) | 230 |
| CspAI | ACCGGT | 1 cut(s) | 143 |
| CviAII | CATG | 3 cut(s) | 153, 279, 813 |
| DdeI | CTNAG | 2 cut(s) | 433, 759 |
| DpnI | GATC | 1 cut(s) | 794 |
| DpnII | GATC | 1 cut(s) | 792 |
| DraIII | CACNNNGTG | 1 cut(s) | 155 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 279 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 279 |
| EaeI | YGGCCR | 1 cut(s) | 293 |
| Eam1104I | CTCTTC | 2 cut(s) | 164, 189 |
| EarI | CTCTTC | 2 cut(s) | 164, 189 |
| Eco31I | GGTCTC | 1 cut(s) | 541 |
| Eco88I | CYCGRG | 1 cut(s) | 368 |
| EcoRI | GAATTC | 2 cut(s) | 51, 677 |
| EcoRII | CCWGG | 2 cut(s) | 46, 178 |
| FaeI | CATG | 3 cut(s) | 156, 282, 816 |
| FatI | CATG | 3 cut(s) | 152, 278, 812 |
| FauI | CCCGC | 2 cut(s) | 134, 312 |
| FauNDI | CATATG | 1 cut(s) | 477 |
| Fnu4HI | GCNGC | 5 cut(s) | 65, 239, 308, 311, 429 |
| FokI | GGATG | 4 cut(s) | 208, 446, 494, 548 |
| Fsp4HI | GCNGC | 5 cut(s) | 65, 239, 308, 311, 429 |
| FspBI | CTAG | 2 cut(s) | 375, 587 |
| GluI | GCNGC | 5 cut(s) | 65, 239, 308, 311, 429 |
| GsuI | CTGGAG | 1 cut(s) | 476 |
| HaeIII | GGCC | 4 cut(s) | 105, 183, 295, 344 |
| HapII | CCGG | 3 cut(s) | 61, 109, 144 |
| HgaI | GACGC | 1 cut(s) | 230 |
| Hin1II | CATG | 3 cut(s) | 156, 282, 816 |
| HindIII | AAGCTT | 1 cut(s) | 408 |
| HinfI | GANTC | 6 cut(s) | 364, 469, 485, 569, 721, 771 |
| HpaII | CCGG | 3 cut(s) | 61, 109, 144 |
| HphI | GGTGA | 1 cut(s) | 141 |
| Hpy166II | GTNNAC | 2 cut(s) | 149, 328 |
| Hpy188I | TCNGA | 1 cut(s) | 57 |
| Hpy188III | TCNNGA | 5 cut(s) | 320, 368, 581, 635, 813 |
| Hpy8I | GTNNAC | 2 cut(s) | 149, 328 |
| HpyAV | CCTTC | 2 cut(s) | 519, 742 |
| HpyCH4III | ACNGT | 1 cut(s) | 394 |
| HpyCH4IV | ACGT | 2 cut(s) | 227, 384 |
| HpyCH4V | TGCA | 2 cut(s) | 310, 785 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 13, 208, 244, 283, 292, 416, 425, 437, 446 |
| HpyF3I | CTNAG | 2 cut(s) | 433, 759 |
| HpySE526I | ACGT | 2 cut(s) | 227, 384 |
| Hsp92II | CATG | 3 cut(s) | 156, 282, 816 |
| Kzo9I | GATC | 1 cut(s) | 792 |
| LmnI | GCTCC | 3 cut(s) | 120, 258, 495 |
| Lsp1109I | GCAGC | 3 cut(s) | 294, 322, 440 |
| MaeI | CTAG | 2 cut(s) | 375, 587 |
| MaeII | ACGT | 2 cut(s) | 227, 384 |
| MaeIII | GTNAC | 3 cut(s) | 266, 566, 778 |
| MalI | GATC | 1 cut(s) | 794 |
| MboI | GATC | 1 cut(s) | 792 |
| MboII | GAAGA | 6 cut(s) | 181, 206, 524, 527, 557, 730 |
| MhlI | GDGCHC | 1 cut(s) | 160 |
| MlsI | TGGCCA | 1 cut(s) | 295 |
| MluCI | AATT | 3 cut(s) | 51, 133, 677 |
| MluNI | TGGCCA | 1 cut(s) | 295 |
| MlyI | GAGTC | 3 cut(s) | 463, 563, 715 |
| MnlI | CCTC | 3 cut(s) | 27, 430, 617 |
| Mox20I | TGGCCA | 1 cut(s) | 295 |
| MscI | TGGCCA | 1 cut(s) | 295 |
| MseI | TTAA | 5 cut(s) | 32, 230, 663, 671, 714 |
| MslI | CAYNNNNRTG | 4 cut(s) | 230, 264, 464, 480 |
| Msp20I | TGGCCA | 1 cut(s) | 295 |
| MspA1I | CMGCKG | 2 cut(s) | 291, 307 |
| MspI | CCGG | 3 cut(s) | 61, 109, 144 |
| MspR9I | CCNGG | 2 cut(s) | 48, 180 |
| MvaI | CCWGG | 2 cut(s) | 48, 180 |
| MvnI | CGCG | 1 cut(s) | 241 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 13, 208, 244, 283, 292, 416, 425, 437, 446 |
| NdeI | CATATG | 1 cut(s) | 477 |
| NdeII | GATC | 1 cut(s) | 792 |
| NlaIII | CATG | 3 cut(s) | 156, 282, 816 |
| NmuCI | GTSAC | 2 cut(s) | 266, 566 |
| PaeR7I | CTCGAG | 1 cut(s) | 368 |
| PagI | TCATGA | 1 cut(s) | 812 |
| PfeI | GAWTC | 3 cut(s) | 364, 485, 771 |
| PinAI | ACCGGT | 1 cut(s) | 143 |
| PkrI | GCNGC | 5 cut(s) | 66, 240, 309, 312, 430 |
| PleI | GAGTC | 3 cut(s) | 463, 563, 715 |
| PpsI | GAGTC | 3 cut(s) | 463, 563, 715 |
| Psp6I | CCWGG | 2 cut(s) | 46, 178 |
| PspGI | CCWGG | 2 cut(s) | 46, 178 |
| PspPI | GGNCC | 1 cut(s) | 182 |
| PstI | CTGCAG | 2 cut(s) | 312, 787 |
| RseI | CAYNNNNRTG | 4 cut(s) | 230, 264, 464, 480 |
| SaqAI | TTAA | 5 cut(s) | 32, 230, 663, 671, 714 |
| SatI | GCNGC | 5 cut(s) | 65, 239, 308, 311, 429 |
| Sau3AI | GATC | 1 cut(s) | 792 |
| Sau96I | GGNCC | 1 cut(s) | 182 |
| SchI | GAGTC | 3 cut(s) | 463, 563, 715 |
| ScrFI | CCNGG | 2 cut(s) | 48, 180 |
| SduI | GDGCHC | 1 cut(s) | 160 |
| SfcI | CTRYAG | 2 cut(s) | 308, 783 |
| Sfr274I | CTCGAG | 1 cut(s) | 368 |
| SlaI | CTCGAG | 1 cut(s) | 368 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 230, 264, 464, 480 |
| SmlI | CTYRAG | 3 cut(s) | 338, 368, 405 |
| SmoI | CTYRAG | 3 cut(s) | 338, 368, 405 |
| Sse9I | AATT | 3 cut(s) | 51, 133, 677 |
| SsiI | CCGC | 6 cut(s) | 64, 127, 239, 289, 305, 610 |
| SspMI | CTAG | 2 cut(s) | 375, 587 |
| StyD4I | CCNGG | 2 cut(s) | 46, 178 |
| TaaI | ACNGT | 1 cut(s) | 394 |
| TaiI | ACGT | 2 cut(s) | 230, 387 |
| TaqI | TCGA | 4 cut(s) | 369, 543, 647, 769 |
| TaqII | GACCGA | 1 cut(s) | 285 |
| TasI | AATT | 3 cut(s) | 51, 133, 677 |
| TauI | GCSGC | 2 cut(s) | 67, 241 |
| TfiI | GAWTC | 3 cut(s) | 364, 485, 771 |
| Tru1I | TTAA | 5 cut(s) | 32, 230, 663, 671, 714 |
| Tru9I | TTAA | 5 cut(s) | 32, 230, 663, 671, 714 |
| TscAI | CASTG | 1 cut(s) | 271 |
| TseFI | GTSAC | 2 cut(s) | 266, 566 |
| TseI | GCWGC | 3 cut(s) | 307, 310, 428 |
| Tsp45I | GTSAC | 2 cut(s) | 266, 566 |
| TspDTI | ATGAA | 6 cut(s) | 17, 363, 521, 525, 794, 801 |
| TspGWI | ACGGA | 1 cut(s) | 554 |
| TspRI | CASTG | 1 cut(s) | 271 |
| XapI | RAATTY | 2 cut(s) | 51, 677 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 352 |
| XhoI | CTCGAG | 1 cut(s) | 368 |
| XspI | CTAG | 2 cut(s) | 375, 587 |