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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 81 |
| AciI | CCGC | 3 cut(s) | 76, 79, 494 |
| AclWI | GGATC | 1 cut(s) | 293 |
| AcoI | YGGCCR | 1 cut(s) | 363 |
| AcsI | RAATTY | 3 cut(s) | 293, 309, 351 |
| AcuI | CTGAAG | 1 cut(s) | 572 |
| AfaI | GTAC | 1 cut(s) | 476 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 202, 630 |
| AgsI | TTSAA | 5 cut(s) | 215, 250, 308, 598, 616 |
| AjnI | CCWGG | 1 cut(s) | 113 |
| AluBI | AGCT | 7 cut(s) | 128, 160, 202, 333, 422, 502, 685 |
| AluI | AGCT | 7 cut(s) | 128, 160, 202, 333, 422, 502, 685 |
| Alw21I | GWGCWC | 2 cut(s) | 26, 562 |
| Alw26I | GTCTC | 1 cut(s) | 180 |
| AlwI | GGATC | 1 cut(s) | 293 |
| AoxI | GGCC | 5 cut(s) | 111, 137, 193, 204, 363 |
| ApaI | GGGCCC | 1 cut(s) | 197 |
| ApoI | RAATTY | 3 cut(s) | 293, 309, 351 |
| AspS9I | GGNCC | 5 cut(s) | 137, 193, 194, 205, 230 |
| AsuC2I | CCSGG | 1 cut(s) | 197 |
| AsuHPI | GGTGA | 1 cut(s) | 347 |
| AvaII | GGWCC | 1 cut(s) | 230 |
| BaeGI | GKGCMC | 1 cut(s) | 197 |
| BaeI | ACNNNNGTAYC | 3 cut(s) | 458, 491, 722 |
| BalI | TGGCCA | 1 cut(s) | 365 |
| BanII | GRGCYC | 1 cut(s) | 197 |
| Bbv12I | GWGCWC | 2 cut(s) | 26, 562 |
| BccI | CCATC | 1 cut(s) | 392 |
| BceAI | ACGGC | 3 cut(s) | 17, 48, 126 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 28, 42, 76 |
| BciT130I | CCWGG | 1 cut(s) | 115 |
| BcnI | CCSGG | 1 cut(s) | 197 |
| BcoDI | GTCTC | 1 cut(s) | 180 |
| BfaI | CTAG | 4 cut(s) | 119, 129, 179, 555 |
| BisI | GCNGC | 1 cut(s) | 79 |
| BlsI | GCNGC | 1 cut(s) | 80 |
| Bme1390I | CCNGG | 2 cut(s) | 115, 197 |
| Bme18I | GGWCC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 5 cut(s) | 137, 193, 194, 205, 230 |
| BmiI | GGNNCC | 1 cut(s) | 195 |
| BmrFI | CCNGG | 2 cut(s) | 115, 197 |
| BmrI | ACTGGG | 1 cut(s) | 202 |
| BmsI | GCATC | 3 cut(s) | 286, 334, 637 |
| BmuI | ACTGGG | 1 cut(s) | 202 |
| BpmI | CTGGAG | 1 cut(s) | 121 |
| Bpu10I | CCTNAGC | 2 cut(s) | 161, 423 |
| BpuEI | CTTGAG | 1 cut(s) | 518 |
| BpuMI | CCSGG | 1 cut(s) | 197 |
| Bsa29I | ATCGAT | 1 cut(s) | 523 |
| BsaJI | CCNNGG | 1 cut(s) | 373 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 651, 681 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 202, 630 |
| Bse1I | ACTGG | 1 cut(s) | 208 |
| BseBI | CCWGG | 1 cut(s) | 115 |
| BseCI | ATCGAT | 1 cut(s) | 523 |
| BseDI | CCNNGG | 1 cut(s) | 373 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 202, 630 |
| BseNI | ACTGG | 1 cut(s) | 208 |
| BseSI | GKGCMC | 1 cut(s) | 197 |
| BseYI | CCCAGC | 1 cut(s) | 333 |
| Bsh1236I | CGCG | 1 cut(s) | 81 |
| BshFI | GGCC | 5 cut(s) | 113, 139, 195, 206, 365 |
| BshVI | ATCGAT | 1 cut(s) | 523 |
| BsiHKAI | GWGCWC | 2 cut(s) | 26, 562 |
| BsiSI | CCGG | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 202, 630 |
| BsmAI | GTCTC | 1 cut(s) | 180 |
| BsnI | GGCC | 5 cut(s) | 113, 139, 195, 206, 365 |
| Bsp120I | GGGCCC | 1 cut(s) | 193 |
| Bsp1286I | GDGCHC | 3 cut(s) | 26, 197, 562 |
| Bsp143I | GATC | 4 cut(s) | 11, 298, 415, 520 |
| BspACI | CCGC | 3 cut(s) | 76, 79, 494 |
| BspANI | GGCC | 5 cut(s) | 113, 139, 195, 206, 365 |
| BspDI | ATCGAT | 1 cut(s) | 523 |
| BspFNI | CGCG | 1 cut(s) | 81 |
| BspLI | GGNNCC | 1 cut(s) | 195 |
| BspPI | GGATC | 1 cut(s) | 293 |
| BsrI | ACTGG | 1 cut(s) | 208 |
| BssECI | CCNNGG | 1 cut(s) | 373 |
| BssMI | GATC | 4 cut(s) | 11, 298, 415, 520 |
| BssT1I | CCWWGG | 1 cut(s) | 373 |
| Bst2UI | CCWGG | 1 cut(s) | 115 |
| Bst4CI | ACNGT | 3 cut(s) | 484, 564, 738 |
| BstC8I | GCNNGC | 4 cut(s) | 18, 22, 204, 683 |
| BstDEI | CTNAG | 2 cut(s) | 161, 423 |
| BstFNI | CGCG | 1 cut(s) | 81 |
| BstKTI | GATC | 4 cut(s) | 14, 301, 418, 523 |
| BstMAI | GTCTC | 1 cut(s) | 180 |
| BstMBI | GATC | 4 cut(s) | 11, 298, 415, 520 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 145 |
| BstNI | CCWGG | 1 cut(s) | 115 |
| BstSCI | CCNGG | 2 cut(s) | 113, 195 |
| BstSLI | GKGCMC | 1 cut(s) | 197 |
| BstUI | CGCG | 1 cut(s) | 81 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 721 |
| Bsu15I | ATCGAT | 1 cut(s) | 523 |
| BsuRI | GGCC | 5 cut(s) | 113, 139, 195, 206, 365 |
| BsuTUI | ATCGAT | 1 cut(s) | 523 |
| BtsIMutI | CAGTG | 2 cut(s) | 489, 676 |
| Cac8I | GCNNGC | 4 cut(s) | 18, 22, 204, 683 |
| Cfr13I | GGNCC | 5 cut(s) | 137, 193, 194, 205, 230 |
| ClaI | ATCGAT | 1 cut(s) | 523 |
| CseI | GACGC | 4 cut(s) | 70, 283, 431, 583 |
| Csp6I | GTAC | 1 cut(s) | 475 |
| CviAII | CATG | 4 cut(s) | 470, 625, 710, 721 |
| CviQI | GTAC | 1 cut(s) | 475 |
| DdeI | CTNAG | 2 cut(s) | 161, 423 |
| DpnI | GATC | 4 cut(s) | 13, 300, 417, 522 |
| DpnII | GATC | 4 cut(s) | 11, 298, 415, 520 |
| EaeI | YGGCCR | 1 cut(s) | 363 |
| EciI | GGCGGA | 1 cut(s) | 65 |
| Eco130I | CCWWGG | 1 cut(s) | 373 |
| Eco24I | GRGCYC | 1 cut(s) | 197 |
| Eco47I | GGWCC | 1 cut(s) | 230 |
| Eco57I | CTGAAG | 1 cut(s) | 572 |
| EcoRII | CCWGG | 1 cut(s) | 113 |
| EcoT14I | CCWWGG | 1 cut(s) | 373 |
| EcoT22I | ATGCAT | 1 cut(s) | 630 |
| EcoT38I | GRGCYC | 1 cut(s) | 197 |
| ErhI | CCWWGG | 1 cut(s) | 373 |
| FaeI | CATG | 4 cut(s) | 473, 628, 713, 724 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 480, 512 |
| FatI | CATG | 4 cut(s) | 469, 624, 709, 720 |
| FauI | CCCGC | 1 cut(s) | 501 |
| Fnu4HI | GCNGC | 1 cut(s) | 79 |
| FriOI | GRGCYC | 1 cut(s) | 197 |
| Fsp4HI | GCNGC | 1 cut(s) | 79 |
| FspBI | CTAG | 4 cut(s) | 119, 129, 179, 555 |
| GluI | GCNGC | 1 cut(s) | 79 |
| GsaI | CCCAGC | 1 cut(s) | 337 |
| GsuI | CTGGAG | 1 cut(s) | 121 |
| HaeIII | GGCC | 5 cut(s) | 113, 139, 195, 206, 365 |
| HapII | CCGG | 1 cut(s) | 197 |
| HgaI | GACGC | 4 cut(s) | 70, 283, 431, 583 |
| Hin1II | CATG | 4 cut(s) | 473, 628, 713, 724 |
| HindIII | AAGCTT | 1 cut(s) | 158 |
| HpaII | CCGG | 1 cut(s) | 197 |
| HphI | GGTGA | 1 cut(s) | 347 |
| Hpy188I | TCNGA | 3 cut(s) | 175, 282, 633 |
| Hpy188III | TCNNGA | 7 cut(s) | 100, 241, 305, 341, 452, 590, 743 |
| Hpy99I | CGWCG | 3 cut(s) | 38, 86, 89 |
| HpyAV | CCTTC | 2 cut(s) | 176, 596 |
| HpyCH4III | ACNGT | 3 cut(s) | 484, 564, 738 |
| HpyCH4IV | ACGT | 1 cut(s) | 237 |
| HpyCH4V | TGCA | 4 cut(s) | 49, 412, 628, 730 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 145 |
| HpyF3I | CTNAG | 2 cut(s) | 161, 423 |
| HpySE526I | ACGT | 1 cut(s) | 237 |
| Hsp92II | CATG | 4 cut(s) | 473, 628, 713, 724 |
| Kzo9I | GATC | 4 cut(s) | 11, 298, 415, 520 |
| LmnI | GCTCC | 1 cut(s) | 199 |
| LweI | GCATC | 3 cut(s) | 286, 334, 637 |
| MaeI | CTAG | 4 cut(s) | 119, 129, 179, 555 |
| MaeII | ACGT | 1 cut(s) | 237 |
| MaeIII | GTNAC | 2 cut(s) | 238, 604 |
| MalI | GATC | 4 cut(s) | 13, 300, 417, 522 |
| MboI | GATC | 4 cut(s) | 11, 298, 415, 520 |
| MboII | GAAGA | 3 cut(s) | 21, 280, 686 |
| MhlI | GDGCHC | 3 cut(s) | 26, 197, 562 |
| MlsI | TGGCCA | 1 cut(s) | 365 |
| MluCI | AATT | 7 cut(s) | 132, 287, 293, 309, 351, 616, 650 |
| MluNI | TGGCCA | 1 cut(s) | 365 |
| MnlI | CCTC | 3 cut(s) | 83, 312, 649 |
| Mox20I | TGGCCA | 1 cut(s) | 365 |
| Mph1103I | ATGCAT | 1 cut(s) | 630 |
| MscI | TGGCCA | 1 cut(s) | 365 |
| MslI | CAYNNNNRTG | 2 cut(s) | 225, 719 |
| Msp20I | TGGCCA | 1 cut(s) | 365 |
| MspI | CCGG | 1 cut(s) | 197 |
| MspR9I | CCNGG | 2 cut(s) | 115, 197 |
| MvaI | CCWGG | 1 cut(s) | 115 |
| MvnI | CGCG | 1 cut(s) | 81 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 145 |
| NciI | CCSGG | 1 cut(s) | 197 |
| NdeII | GATC | 4 cut(s) | 11, 298, 415, 520 |
| NlaIII | CATG | 4 cut(s) | 473, 628, 713, 724 |
| NlaIV | GGNNCC | 1 cut(s) | 195 |
| NmuCI | GTSAC | 1 cut(s) | 238 |
| NsiI | ATGCAT | 1 cut(s) | 630 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 42 |
| PkrI | GCNGC | 1 cut(s) | 80 |
| Psp6I | CCWGG | 1 cut(s) | 113 |
| PspFI | CCCAGC | 1 cut(s) | 333 |
| PspGI | CCWGG | 1 cut(s) | 113 |
| PspN4I | GGNNCC | 1 cut(s) | 195 |
| PspOMI | GGGCCC | 1 cut(s) | 193 |
| PspPI | GGNCC | 5 cut(s) | 137, 193, 194, 205, 230 |
| RsaI | GTAC | 1 cut(s) | 476 |
| RsaNI | GTAC | 1 cut(s) | 475 |
| RseI | CAYNNNNRTG | 2 cut(s) | 225, 719 |
| SatI | GCNGC | 1 cut(s) | 79 |
| Sau3AI | GATC | 4 cut(s) | 11, 298, 415, 520 |
| Sau96I | GGNCC | 5 cut(s) | 137, 193, 194, 205, 230 |
| ScrFI | CCNGG | 2 cut(s) | 115, 197 |
| SduI | GDGCHC | 3 cut(s) | 26, 197, 562 |
| SfaNI | GCATC | 3 cut(s) | 286, 334, 637 |
| SinI | GGWCC | 1 cut(s) | 230 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 225, 719 |
| SmlI | CTYRAG | 1 cut(s) | 497 |
| SmoI | CTYRAG | 1 cut(s) | 497 |
| Sse9I | AATT | 7 cut(s) | 132, 287, 293, 309, 351, 616, 650 |
| SsiI | CCGC | 3 cut(s) | 76, 79, 494 |
| SspMI | CTAG | 4 cut(s) | 119, 129, 179, 555 |
| StyD4I | CCNGG | 2 cut(s) | 113, 195 |
| StyI | CCWWGG | 1 cut(s) | 373 |
| TaaI | ACNGT | 3 cut(s) | 484, 564, 738 |
| TaiI | ACGT | 1 cut(s) | 240 |
| TaqI | TCGA | 5 cut(s) | 418, 523, 687, 701, 742 |
| TasI | AATT | 7 cut(s) | 132, 287, 293, 309, 351, 616, 650 |
| TauI | GCSGC | 1 cut(s) | 81 |
| TscAI | CASTG | 2 cut(s) | 489, 676 |
| TseFI | GTSAC | 1 cut(s) | 238 |
| Tsp45I | GTSAC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 1 cut(s) | 582 |
| TspRI | CASTG | 2 cut(s) | 489, 676 |
| VpaK11BI | GGWCC | 1 cut(s) | 230 |
| XapI | RAATTY | 3 cut(s) | 293, 309, 351 |
| XspI | CTAG | 4 cut(s) | 119, 129, 179, 555 |
| Zsp2I | ATGCAT | 1 cut(s) | 630 |