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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| Acc36I | ACCTGC | 1 cut(s) | 150 |
| AccB1I | GGYRCC | 2 cut(s) | 623, 644 |
| AccI | GTMKAC | 1 cut(s) | 196 |
| AciI | CCGC | 2 cut(s) | 523, 668 |
| AclWI | GGATC | 2 cut(s) | 335, 742 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AcvI | CACGTG | 1 cut(s) | 584 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AdeI | CACNNNGTG | 1 cut(s) | 683 |
| AfaI | GTAC | 2 cut(s) | 307, 479 |
| AfeI | AGCGCT | 2 cut(s) | 75, 86 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 488, 532, 585, 658 |
| AflIII | ACRYGT | 1 cut(s) | 581 |
| AgsI | TTSAA | 4 cut(s) | 124, 131, 160, 408 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 227 |
| AjnI | CCWGG | 1 cut(s) | 531 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 5 cut(s) | 64, 188, 244, 346, 368 |
| AluI | AGCT | 5 cut(s) | 64, 188, 244, 346, 368 |
| Alw21I | GWGCWC | 2 cut(s) | 679, 688 |
| Alw44I | GTGCAC | 2 cut(s) | 675, 684 |
| AlwI | GGATC | 2 cut(s) | 335, 742 |
| Aor51HI | AGCGCT | 2 cut(s) | 75, 86 |
| AoxI | GGCC | 2 cut(s) | 410, 511 |
| ApaI | GGGCCC | 1 cut(s) | 515 |
| ApaLI | GTGCAC | 2 cut(s) | 675, 684 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 4 cut(s) | 76, 87, 147, 468 |
| AspS9I | GGNCC | 3 cut(s) | 411, 511, 512 |
| BaeGI | GKGCMC | 3 cut(s) | 515, 679, 688 |
| BanI | GGYRCC | 2 cut(s) | 623, 644 |
| BanII | GRGCYC | 1 cut(s) | 515 |
| BauI | CACGAG | 3 cut(s) | 331, 389, 497 |
| BbrPI | CACGTG | 1 cut(s) | 584 |
| Bbv12I | GWGCWC | 2 cut(s) | 679, 688 |
| BciT130I | CCWGG | 1 cut(s) | 533 |
| BciVI | GTATCC | 1 cut(s) | 614 |
| BfaI | CTAG | 3 cut(s) | 77, 609, 657 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BfoI | RGCGCY | 2 cut(s) | 77, 88 |
| BfuAI | ACCTGC | 1 cut(s) | 150 |
| BfuI | GTATCC | 1 cut(s) | 614 |
| Bme1390I | CCNGG | 1 cut(s) | 533 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 3 cut(s) | 411, 511, 512 |
| BmiI | GGNNCC | 3 cut(s) | 513, 625, 646 |
| BmrFI | CCNGG | 1 cut(s) | 533 |
| BmsI | GCATC | 1 cut(s) | 43 |
| Bsa29I | ATCGAT | 1 cut(s) | 727 |
| BsaAI | YACGTR | 1 cut(s) | 584 |
| BsaBI | GATNNNNATC | 1 cut(s) | 733 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaJI | CCNNGG | 1 cut(s) | 627 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 580, 610 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 488, 532, 585, 658 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| Bse8I | GATNNNNATC | 1 cut(s) | 733 |
| BseBI | CCWGG | 1 cut(s) | 533 |
| BseCI | ATCGAT | 1 cut(s) | 727 |
| BseDI | CCNNGG | 1 cut(s) | 627 |
| BseGI | GGATG | 1 cut(s) | 58 |
| BseJI | GATNNNNATC | 1 cut(s) | 733 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 488, 532, 585, 658 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 2 cut(s) | 40, 360 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 3 cut(s) | 515, 679, 688 |
| BshFI | GGCC | 2 cut(s) | 412, 513 |
| BshNI | GGYRCC | 2 cut(s) | 623, 644 |
| BshVI | ATCGAT | 1 cut(s) | 727 |
| BsiHKAI | GWGCWC | 2 cut(s) | 679, 688 |
| BslFI | GGGAC | 2 cut(s) | 507, 516 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 488, 532, 585, 658 |
| BsmFI | GGGAC | 2 cut(s) | 507, 516 |
| BsnI | GGCC | 2 cut(s) | 412, 513 |
| Bsp120I | GGGCCC | 1 cut(s) | 511 |
| Bsp1286I | GDGCHC | 3 cut(s) | 515, 679, 688 |
| Bsp143I | GATC | 3 cut(s) | 45, 327, 734 |
| Bsp19I | CCATGG | 1 cut(s) | 627 |
| BspACI | CCGC | 2 cut(s) | 523, 668 |
| BspANI | GGCC | 2 cut(s) | 412, 513 |
| BspCNI | CTCAG | 2 cut(s) | 39, 361 |
| BspDI | ATCGAT | 1 cut(s) | 727 |
| BspLI | GGNNCC | 3 cut(s) | 513, 625, 646 |
| BspMI | ACCTGC | 1 cut(s) | 150 |
| BspPI | GGATC | 2 cut(s) | 335, 742 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BspT107I | GGYRCC | 2 cut(s) | 623, 644 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 1 cut(s) | 627 |
| BssMI | GATC | 3 cut(s) | 45, 327, 734 |
| BssNAI | GTATAC | 1 cut(s) | 197 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssSI | CACGAG | 3 cut(s) | 331, 389, 497 |
| BssT1I | CCWWGG | 1 cut(s) | 627 |
| Bst1107I | GTATAC | 1 cut(s) | 197 |
| Bst2BI | CACGAG | 3 cut(s) | 331, 389, 497 |
| Bst2UI | CCWGG | 1 cut(s) | 533 |
| Bst4CI | ACNGT | 2 cut(s) | 201, 305 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 195 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 683 |
| BstBAI | YACGTR | 1 cut(s) | 584 |
| BstC8I | GCNNGC | 1 cut(s) | 668 |
| BstDEI | CTNAG | 4 cut(s) | 26, 369, 423, 483 |
| BstDSI | CCRYGG | 1 cut(s) | 627 |
| BstF5I | GGATG | 1 cut(s) | 58 |
| BstH2I | RGCGCY | 2 cut(s) | 77, 88 |
| BstHHI | GCGC | 4 cut(s) | 76, 87, 147, 468 |
| BstKTI | GATC | 3 cut(s) | 48, 330, 737 |
| BstMBI | GATC | 3 cut(s) | 45, 327, 734 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 683 |
| BstNI | CCWGG | 1 cut(s) | 533 |
| BstSCI | CCNGG | 1 cut(s) | 531 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstSLI | GKGCMC | 3 cut(s) | 515, 679, 688 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 620 |
| BstZ17I | GTATAC | 1 cut(s) | 197 |
| Bsu15I | ATCGAT | 1 cut(s) | 727 |
| BsuI | GTATCC | 1 cut(s) | 614 |
| BsuRI | GGCC | 2 cut(s) | 412, 513 |
| BsuTUI | ATCGAT | 1 cut(s) | 727 |
| BtgI | CCRYGG | 1 cut(s) | 627 |
| BtsCI | GGATG | 1 cut(s) | 58 |
| BveI | ACCTGC | 1 cut(s) | 150 |
| Cac8I | GCNNGC | 1 cut(s) | 668 |
| CfoI | GCGC | 4 cut(s) | 76, 87, 147, 468 |
| Cfr13I | GGNCC | 3 cut(s) | 411, 511, 512 |
| ClaI | ATCGAT | 1 cut(s) | 727 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 2 cut(s) | 306, 478 |
| CviAII | CATG | 3 cut(s) | 377, 434, 628 |
| CviJI | RGCY | 9 cut(s) | 64, 188, 244, 281, 346, 368, 412, 513, 612 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 188, 244, 281, 346, 368, 412, 513, 612 |
| CviQI | GTAC | 2 cut(s) | 306, 478 |
| DdeI | CTNAG | 4 cut(s) | 26, 369, 423, 483 |
| DpnI | GATC | 3 cut(s) | 47, 329, 736 |
| DpnII | GATC | 3 cut(s) | 45, 327, 734 |
| DraIII | CACNNNGTG | 1 cut(s) | 683 |
| DriI | GACNNNNNGTC | 1 cut(s) | 227 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 195 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 227 |
| EarI | CTCTTC | 2 cut(s) | 75, 195 |
| Eco130I | CCWWGG | 1 cut(s) | 627 |
| Eco24I | GRGCYC | 1 cut(s) | 515 |
| Eco47III | AGCGCT | 2 cut(s) | 75, 86 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| Eco72I | CACGTG | 1 cut(s) | 584 |
| EcoRII | CCWGG | 1 cut(s) | 531 |
| EcoT14I | CCWWGG | 1 cut(s) | 627 |
| EcoT38I | GRGCYC | 1 cut(s) | 515 |
| ErhI | CCWWGG | 1 cut(s) | 627 |
| FaeI | CATG | 3 cut(s) | 380, 437, 631 |
| FaqI | GGGAC | 2 cut(s) | 507, 516 |
| FatI | CATG | 3 cut(s) | 376, 433, 627 |
| FauI | CCCGC | 1 cut(s) | 675 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FblI | GTMKAC | 1 cut(s) | 196 |
| FokI | GGATG | 1 cut(s) | 65 |
| FriOI | GRGCYC | 1 cut(s) | 515 |
| FspBI | CTAG | 3 cut(s) | 77, 609, 657 |
| GlaI | GCGC | 4 cut(s) | 75, 86, 146, 467 |
| HaeII | RGCGCY | 2 cut(s) | 77, 88 |
| HaeIII | GGCC | 2 cut(s) | 412, 513 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 4 cut(s) | 76, 87, 147, 468 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 3 cut(s) | 380, 437, 631 |
| Hin6I | GCGC | 4 cut(s) | 74, 85, 145, 466 |
| HinP1I | GCGC | 4 cut(s) | 74, 85, 145, 466 |
| HinfI | GANTC | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 4 cut(s) | 197, 221, 677, 686 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 184 |
| Hpy188III | TCNNGA | 2 cut(s) | 331, 391 |
| Hpy8I | GTNNAC | 4 cut(s) | 197, 221, 677, 686 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 3 cut(s) | 118, 277, 530 |
| HpyCH4III | ACNGT | 2 cut(s) | 201, 305 |
| HpyCH4IV | ACGT | 5 cut(s) | 505, 565, 583, 673, 682 |
| HpyCH4V | TGCA | 5 cut(s) | 56, 452, 546, 677, 686 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 683 |
| HpyF3I | CTNAG | 4 cut(s) | 26, 369, 423, 483 |
| HpySE526I | ACGT | 5 cut(s) | 505, 565, 583, 673, 682 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 3 cut(s) | 380, 437, 631 |
| HspAI | GCGC | 4 cut(s) | 74, 85, 145, 466 |
| Kzo9I | GATC | 3 cut(s) | 45, 327, 734 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LmnI | GCTCC | 1 cut(s) | 472 |
| LpnPI | CCDG | 5 cut(s) | 129, 155, 306, 518, 545 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 3 cut(s) | 77, 609, 657 |
| MaeII | ACGT | 5 cut(s) | 505, 565, 583, 673, 682 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 3 cut(s) | 47, 329, 736 |
| MboI | GATC | 3 cut(s) | 45, 327, 734 |
| MboII | GAAGA | 2 cut(s) | 92, 182 |
| MhlI | GDGCHC | 3 cut(s) | 515, 679, 688 |
| MluCI | AATT | 7 cut(s) | 178, 246, 397, 403, 442, 692, 738 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 695 |
| MslI | CAYNNNNRTG | 4 cut(s) | 389, 618, 714, 729 |
| MspR9I | CCNGG | 1 cut(s) | 533 |
| MvaI | CCWGG | 1 cut(s) | 533 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 683 |
| NcoI | CCATGG | 1 cut(s) | 627 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 45, 327, 734 |
| NlaIII | CATG | 3 cut(s) | 380, 437, 631 |
| NlaIV | GGNNCC | 3 cut(s) | 513, 625, 646 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 670, 679 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PmaCI | CACGTG | 1 cut(s) | 584 |
| PmlI | CACGTG | 1 cut(s) | 584 |
| Ppu21I | YACGTR | 1 cut(s) | 584 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| Psp6I | CCWGG | 1 cut(s) | 531 |
| PspCI | CACGTG | 1 cut(s) | 584 |
| PspGI | CCWGG | 1 cut(s) | 531 |
| PspN4I | GGNNCC | 3 cut(s) | 513, 625, 646 |
| PspOMI | GGGCCC | 1 cut(s) | 511 |
| PspPI | GGNCC | 3 cut(s) | 411, 511, 512 |
| RsaI | GTAC | 2 cut(s) | 307, 479 |
| RsaNI | GTAC | 2 cut(s) | 306, 478 |
| RseI | CAYNNNNRTG | 4 cut(s) | 389, 618, 714, 729 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| SaqAI | TTAA | 1 cut(s) | 695 |
| Sau3AI | GATC | 3 cut(s) | 45, 327, 734 |
| Sau96I | GGNCC | 3 cut(s) | 411, 511, 512 |
| ScrFI | CCNGG | 1 cut(s) | 533 |
| SduI | GDGCHC | 3 cut(s) | 515, 679, 688 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 389, 618, 714, 729 |
| Sse9I | AATT | 7 cut(s) | 178, 246, 397, 403, 442, 692, 738 |
| SsiI | CCGC | 2 cut(s) | 523, 668 |
| SspI | AATATT | 1 cut(s) | 355 |
| SspMI | CTAG | 3 cut(s) | 77, 609, 657 |
| StyD4I | CCNGG | 1 cut(s) | 531 |
| StyI | CCWWGG | 1 cut(s) | 627 |
| TaaI | ACNGT | 2 cut(s) | 201, 305 |
| TaiI | ACGT | 5 cut(s) | 508, 568, 586, 676, 685 |
| TaqI | TCGA | 2 cut(s) | 44, 727 |
| TasI | AATT | 7 cut(s) | 178, 246, 397, 403, 442, 692, 738 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 695 |
| Tru9I | TTAA | 1 cut(s) | 695 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 2 cut(s) | 329, 422 |
| TspGWI | ACGGA | 1 cut(s) | 340 |
| VneI | GTGCAC | 2 cut(s) | 675, 684 |
| XmiI | GTMKAC | 1 cut(s) | 196 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 77, 609, 657 |