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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 125, 878 |
| AccIII | TCCGGA | 1 cut(s) | 958 |
| AciI | CCGC | 1 cut(s) | 242 |
| AclI | AACGTT | 1 cut(s) | 621 |
| AclWI | GGATC | 3 cut(s) | 406, 418, 419 |
| AcsI | RAATTY | 1 cut(s) | 737 |
| AcyI | GRCGYC | 1 cut(s) | 126 |
| AfaI | GTAC | 2 cut(s) | 421, 693 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 120, 262, 289, 373, 989 |
| AflII | CTTAAG | 1 cut(s) | 398 |
| AgeI | ACCGGT | 1 cut(s) | 140 |
| AgsI | TTSAA | 3 cut(s) | 104, 476, 685 |
| AjiI | CACGTC | 1 cut(s) | 547 |
| AluBI | AGCT | 7 cut(s) | 333, 488, 509, 601, 672, 871, 893 |
| AluI | AGCT | 7 cut(s) | 333, 488, 509, 601, 672, 871, 893 |
| Alw21I | GWGCWC | 3 cut(s) | 215, 552, 603 |
| Alw26I | GTCTC | 2 cut(s) | 341, 671 |
| Alw44I | GTGCAC | 1 cut(s) | 211 |
| AlwI | GGATC | 3 cut(s) | 406, 418, 419 |
| Aor13HI | TCCGGA | 1 cut(s) | 958 |
| AoxI | GGCC | 1 cut(s) | 88 |
| ApaLI | GTGCAC | 1 cut(s) | 211 |
| ApeKI | GCWGC | 2 cut(s) | 305, 607 |
| ApoI | RAATTY | 1 cut(s) | 737 |
| AseI | ATTAAT | 1 cut(s) | 834 |
| AsiGI | ACCGGT | 1 cut(s) | 140 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 714 |
| AspLEI | GCGC | 4 cut(s) | 128, 390, 980, 996 |
| AspS9I | GGNCC | 2 cut(s) | 88, 376 |
| AsuC2I | CCSGG | 1 cut(s) | 121 |
| AsuII | TTCGAA | 1 cut(s) | 198 |
| AvaII | GGWCC | 1 cut(s) | 376 |
| AxyI | CCTNAGG | 1 cut(s) | 984 |
| BaeGI | GKGCMC | 1 cut(s) | 215 |
| BamHI | GGATCC | 1 cut(s) | 411 |
| BanI | GGYRCC | 2 cut(s) | 125, 878 |
| BanII | GRGCYC | 1 cut(s) | 603 |
| BbsI | GAAGAC | 2 cut(s) | 582, 785 |
| Bbv12I | GWGCWC | 3 cut(s) | 215, 552, 603 |
| BbvI | GCAGC | 2 cut(s) | 292, 619 |
| BccI | CCATC | 6 cut(s) | 25, 43, 231, 401, 651, 727 |
| BceAI | ACGGC | 2 cut(s) | 169, 452 |
| BciVI | GTATCC | 1 cut(s) | 356 |
| BcnI | CCSGG | 1 cut(s) | 121 |
| BcoDI | GTCTC | 2 cut(s) | 341, 671 |
| BfaI | CTAG | 4 cut(s) | 297, 344, 933, 997 |
| BfoI | RGCGCY | 2 cut(s) | 129, 997 |
| BfrI | CTTAAG | 1 cut(s) | 398 |
| BfuI | GTATCC | 1 cut(s) | 356 |
| BisI | GCNGC | 3 cut(s) | 243, 306, 608 |
| BlsI | GCNGC | 3 cut(s) | 244, 307, 609 |
| Bme1390I | CCNGG | 1 cut(s) | 121 |
| Bme18I | GGWCC | 1 cut(s) | 376 |
| BmgBI | CACGTC | 1 cut(s) | 547 |
| BmgT120I | GGNCC | 2 cut(s) | 88, 376 |
| BmiI | GGNNCC | 4 cut(s) | 127, 377, 413, 880 |
| BmrFI | CCNGG | 1 cut(s) | 121 |
| BmsI | GCATC | 5 cut(s) | 45, 254, 403, 839, 861 |
| BpiI | GAAGAC | 2 cut(s) | 582, 785 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 322, 354 |
| Bpu14I | TTCGAA | 1 cut(s) | 198 |
| BpuEI | CTTGAG | 1 cut(s) | 587 |
| BpuMI | CCSGG | 1 cut(s) | 121 |
| BsaBI | GATNNNNATC | 1 cut(s) | 770 |
| BsaHI | GRCGYC | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 2 cut(s) | 120, 939 |
| BsaWI | WCCGGW | 3 cut(s) | 140, 207, 958 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 120, 262, 289, 373, 989 |
| Bse118I | RCCGGY | 2 cut(s) | 140, 289 |
| Bse21I | CCTNAGG | 1 cut(s) | 984 |
| Bse8I | GATNNNNATC | 1 cut(s) | 770 |
| BseAI | TCCGGA | 1 cut(s) | 958 |
| BseDI | CCNNGG | 2 cut(s) | 120, 939 |
| BseGI | GGATG | 3 cut(s) | 40, 182, 854 |
| BseJI | GATNNNNATC | 1 cut(s) | 770 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 120, 262, 289, 373, 989 |
| BseMII | CTCAG | 2 cut(s) | 82, 682 |
| BseRI | GAGGAG | 2 cut(s) | 122, 444 |
| BseSI | GKGCMC | 1 cut(s) | 215 |
| BseXI | GCAGC | 2 cut(s) | 292, 619 |
| Bsh1285I | CGRYCG | 1 cut(s) | 145 |
| BshFI | GGCC | 1 cut(s) | 90 |
| BshNI | GGYRCC | 2 cut(s) | 125, 878 |
| BshTI | ACCGGT | 1 cut(s) | 140 |
| BsiEI | CGRYCG | 1 cut(s) | 145 |
| BsiHKAI | GWGCWC | 3 cut(s) | 215, 552, 603 |
| BsiSI | CCGG | 5 cut(s) | 120, 141, 208, 290, 959 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 120, 262, 289, 373, 989 |
| BsmAI | GTCTC | 2 cut(s) | 341, 671 |
| BsnI | GGCC | 1 cut(s) | 90 |
| Bsp119I | TTCGAA | 1 cut(s) | 198 |
| Bsp1286I | GDGCHC | 3 cut(s) | 215, 552, 603 |
| Bsp13I | TCCGGA | 1 cut(s) | 958 |
| Bsp143I | GATC | 3 cut(s) | 411, 423, 771 |
| BspACI | CCGC | 1 cut(s) | 242 |
| BspANI | GGCC | 1 cut(s) | 90 |
| BspCNI | CTCAG | 2 cut(s) | 81, 681 |
| BspEI | TCCGGA | 1 cut(s) | 958 |
| BspHI | TCATGA | 3 cut(s) | 525, 625, 865 |
| BspLI | GGNNCC | 4 cut(s) | 127, 377, 413, 880 |
| BspPI | GGATC | 3 cut(s) | 406, 418, 419 |
| BspT104I | TTCGAA | 1 cut(s) | 198 |
| BspT107I | GGYRCC | 2 cut(s) | 125, 878 |
| BspTI | CTTAAG | 1 cut(s) | 398 |
| BsrFI | RCCGGY | 2 cut(s) | 140, 289 |
| BssAI | RCCGGY | 2 cut(s) | 140, 289 |
| BssECI | CCNNGG | 2 cut(s) | 120, 939 |
| BssMI | GATC | 3 cut(s) | 411, 423, 771 |
| BssNI | GRCGYC | 1 cut(s) | 126 |
| Bst6I | CTCTTC | 2 cut(s) | 21, 39 |
| BstACI | GRCGYC | 1 cut(s) | 126 |
| BstAFI | CTTAAG | 1 cut(s) | 398 |
| BstBI | TTCGAA | 1 cut(s) | 198 |
| BstC8I | GCNNGC | 1 cut(s) | 392 |
| BstDEI | CTNAG | 5 cut(s) | 68, 134, 416, 668, 984 |
| BstDSI | CCRYGG | 1 cut(s) | 939 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 987 |
| BstF5I | GGATG | 3 cut(s) | 40, 182, 854 |
| BstH2I | RGCGCY | 2 cut(s) | 129, 997 |
| BstHHI | GCGC | 4 cut(s) | 128, 390, 980, 996 |
| BstKTI | GATC | 3 cut(s) | 414, 426, 774 |
| BstMAI | GTCTC | 2 cut(s) | 341, 671 |
| BstMBI | GATC | 3 cut(s) | 411, 423, 771 |
| BstMCI | CGRYCG | 1 cut(s) | 145 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 485, 506, 607 |
| BstSCI | CCNGG | 1 cut(s) | 119 |
| BstSLI | GKGCMC | 1 cut(s) | 215 |
| BstV1I | GCAGC | 2 cut(s) | 292, 619 |
| BstV2I | GAAGAC | 2 cut(s) | 582, 785 |
| BstX2I | RGATCY | 1 cut(s) | 411 |
| BstYI | RGATCY | 1 cut(s) | 411 |
| Bsu36I | CCTNAGG | 1 cut(s) | 984 |
| BsuI | GTATCC | 1 cut(s) | 356 |
| BsuRI | GGCC | 1 cut(s) | 90 |
| BtgI | CCRYGG | 1 cut(s) | 939 |
| BtrI | CACGTC | 1 cut(s) | 547 |
| BtsCI | GGATG | 3 cut(s) | 40, 182, 854 |
| Cac8I | GCNNGC | 1 cut(s) | 392 |
| CciI | TCATGA | 3 cut(s) | 525, 625, 865 |
| CfoI | GCGC | 4 cut(s) | 128, 390, 980, 996 |
| Cfr10I | RCCGGY | 2 cut(s) | 140, 289 |
| Cfr13I | GGNCC | 2 cut(s) | 88, 376 |
| Csp6I | GTAC | 2 cut(s) | 420, 692 |
| CspAI | ACCGGT | 1 cut(s) | 140 |
| CviAII | CATG | 5 cut(s) | 526, 538, 626, 866, 883 |
| CviQI | GTAC | 2 cut(s) | 420, 692 |
| DdeI | CTNAG | 5 cut(s) | 68, 134, 416, 668, 984 |
| DinI | GGCGCC | 1 cut(s) | 127 |
| DpnI | GATC | 3 cut(s) | 413, 425, 773 |
| DpnII | GATC | 3 cut(s) | 411, 423, 771 |
| Eam1104I | CTCTTC | 2 cut(s) | 21, 39 |
| EarI | CTCTTC | 2 cut(s) | 21, 39 |
| Ecl136II | GAGCTC | 1 cut(s) | 601 |
| Eco24I | GRGCYC | 1 cut(s) | 603 |
| Eco47I | GGWCC | 1 cut(s) | 376 |
| Eco53kI | GAGCTC | 1 cut(s) | 601 |
| Eco81I | CCTNAGG | 1 cut(s) | 984 |
| EcoICRI | GAGCTC | 1 cut(s) | 601 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 987 |
| EcoO109I | RGGNCCY | 1 cut(s) | 88 |
| EcoRI | GAATTC | 1 cut(s) | 737 |
| EcoT22I | ATGCAT | 1 cut(s) | 854 |
| EcoT38I | GRGCYC | 1 cut(s) | 603 |
| EgeI | GGCGCC | 1 cut(s) | 127 |
| EheI | GGCGCC | 1 cut(s) | 127 |
| FaeI | CATG | 5 cut(s) | 529, 541, 629, 869, 886 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 317, 349 |
| FatI | CATG | 5 cut(s) | 525, 537, 625, 865, 882 |
| FauNDI | CATATG | 1 cut(s) | 61 |
| Fnu4HI | GCNGC | 3 cut(s) | 243, 306, 608 |
| FokI | GGATG | 3 cut(s) | 47, 169, 861 |
| FriOI | GRGCYC | 1 cut(s) | 603 |
| Fsp4HI | GCNGC | 3 cut(s) | 243, 306, 608 |
| FspBI | CTAG | 4 cut(s) | 297, 344, 933, 997 |
| GlaI | GCGC | 4 cut(s) | 127, 389, 979, 995 |
| GluI | GCNGC | 3 cut(s) | 243, 306, 608 |
| HaeII | RGCGCY | 2 cut(s) | 129, 997 |
| HaeIII | GGCC | 1 cut(s) | 90 |
| HapII | CCGG | 5 cut(s) | 120, 141, 208, 290, 959 |
| HhaI | GCGC | 4 cut(s) | 128, 390, 980, 996 |
| Hin1I | GRCGYC | 1 cut(s) | 126 |
| Hin1II | CATG | 5 cut(s) | 529, 541, 629, 869, 886 |
| Hin6I | GCGC | 4 cut(s) | 126, 388, 978, 994 |
| HinP1I | GCGC | 4 cut(s) | 126, 388, 978, 994 |
| HinfI | GANTC | 7 cut(s) | 8, 110, 259, 267, 629, 781, 962 |
| HpaII | CCGG | 5 cut(s) | 120, 141, 208, 290, 959 |
| Hpy166II | GTNNAC | 1 cut(s) | 213 |
| Hpy188I | TCNGA | 6 cut(s) | 13, 147, 272, 441, 709, 831 |
| Hpy188III | TCNNGA | 8 cut(s) | 104, 526, 626, 641, 775, 866, 933, 959 |
| Hpy8I | GTNNAC | 1 cut(s) | 213 |
| HpyAV | CCTTC | 2 cut(s) | 802, 983 |
| HpyCH4IV | ACGT | 3 cut(s) | 444, 546, 621 |
| HpyCH4V | TGCA | 4 cut(s) | 213, 394, 806, 852 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 485, 506, 607 |
| HpyF3I | CTNAG | 5 cut(s) | 68, 134, 416, 668, 984 |
| HpySE526I | ACGT | 3 cut(s) | 444, 546, 621 |
| Hsp92I | GRCGYC | 1 cut(s) | 126 |
| Hsp92II | CATG | 5 cut(s) | 529, 541, 629, 869, 886 |
| HspAI | GCGC | 4 cut(s) | 126, 388, 978, 994 |
| KasI | GGCGCC | 1 cut(s) | 125 |
| Kpn2I | TCCGGA | 1 cut(s) | 958 |
| Kzo9I | GATC | 3 cut(s) | 411, 423, 771 |
| LmnI | GCTCC | 1 cut(s) | 555 |
| Lsp1109I | GCAGC | 2 cut(s) | 292, 619 |
| LweI | GCATC | 5 cut(s) | 45, 254, 403, 839, 861 |
| MaeI | CTAG | 4 cut(s) | 297, 344, 933, 997 |
| MaeII | ACGT | 3 cut(s) | 444, 546, 621 |
| MaeIII | GTNAC | 1 cut(s) | 314 |
| MalI | GATC | 3 cut(s) | 413, 425, 773 |
| MboI | GATC | 3 cut(s) | 411, 423, 771 |
| MboII | GAAGA | 9 cut(s) | 38, 56, 183, 186, 189, 225, 587, 790, 931 |
| MflI | RGATCY | 1 cut(s) | 411 |
| MhlI | GDGCHC | 3 cut(s) | 215, 552, 603 |
| MluCI | AATT | 7 cut(s) | 275, 300, 519, 703, 737, 954, 967 |
| Mly113I | GGCGCC | 1 cut(s) | 126 |
| MlyI | GAGTC | 4 cut(s) | 119, 623, 775, 971 |
| MmeI | TCCRAC | 1 cut(s) | 125 |
| MnlI | CCTC | 5 cut(s) | 100, 348, 465, 490, 565 |
| Mph1103I | ATGCAT | 1 cut(s) | 854 |
| MroI | TCCGGA | 1 cut(s) | 958 |
| MroXI | GAANNNNTTC | 1 cut(s) | 714 |
| MseI | TTAA | 3 cut(s) | 321, 399, 834 |
| MslI | CAYNNNNRTG | 3 cut(s) | 208, 540, 914 |
| MspCI | CTTAAG | 1 cut(s) | 398 |
| MspI | CCGG | 5 cut(s) | 120, 141, 208, 290, 959 |
| MspR9I | CCNGG | 1 cut(s) | 121 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 485, 506, 607 |
| NarI | GGCGCC | 1 cut(s) | 126 |
| NciI | CCSGG | 1 cut(s) | 121 |
| NdeI | CATATG | 1 cut(s) | 61 |
| NdeII | GATC | 3 cut(s) | 411, 423, 771 |
| NlaIII | CATG | 5 cut(s) | 529, 541, 629, 869, 886 |
| NlaIV | GGNNCC | 4 cut(s) | 127, 377, 413, 880 |
| NsiI | ATGCAT | 1 cut(s) | 854 |
| NspV | TTCGAA | 1 cut(s) | 198 |
| PagI | TCATGA | 3 cut(s) | 525, 625, 865 |
| PdmI | GAANNNNTTC | 1 cut(s) | 714 |
| PfeI | GAWTC | 3 cut(s) | 8, 259, 267 |
| PinAI | ACCGGT | 1 cut(s) | 140 |
| PkrI | GCNGC | 3 cut(s) | 244, 307, 609 |
| PleI | GAGTC | 4 cut(s) | 118, 623, 775, 970 |
| PluTI | GGCGCC | 1 cut(s) | 129 |
| PpsI | GAGTC | 4 cut(s) | 118, 623, 775, 970 |
| PshBI | ATTAAT | 1 cut(s) | 834 |
| Psp124BI | GAGCTC | 1 cut(s) | 603 |
| Psp1406I | AACGTT | 1 cut(s) | 621 |
| PspN4I | GGNNCC | 4 cut(s) | 127, 377, 413, 880 |
| PspPI | GGNCC | 2 cut(s) | 88, 376 |
| PsuI | RGATCY | 1 cut(s) | 411 |
| RsaI | GTAC | 2 cut(s) | 421, 693 |
| RsaNI | GTAC | 2 cut(s) | 420, 692 |
| RseI | CAYNNNNRTG | 3 cut(s) | 208, 540, 914 |
| SacI | GAGCTC | 1 cut(s) | 603 |
| SaqAI | TTAA | 3 cut(s) | 321, 399, 834 |
| SatI | GCNGC | 3 cut(s) | 243, 306, 608 |
| Sau3AI | GATC | 3 cut(s) | 411, 423, 771 |
| Sau96I | GGNCC | 2 cut(s) | 88, 376 |
| SchI | GAGTC | 4 cut(s) | 119, 623, 775, 971 |
| ScrFI | CCNGG | 1 cut(s) | 121 |
| SduI | GDGCHC | 3 cut(s) | 215, 552, 603 |
| SfaNI | GCATC | 5 cut(s) | 45, 254, 403, 839, 861 |
| SfoI | GGCGCC | 1 cut(s) | 127 |
| SfuI | TTCGAA | 1 cut(s) | 198 |
| SinI | GGWCC | 1 cut(s) | 376 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 208, 540, 914 |
| SmlI | CTYRAG | 2 cut(s) | 398, 602 |
| SmoI | CTYRAG | 2 cut(s) | 398, 602 |
| Sse9I | AATT | 7 cut(s) | 275, 300, 519, 703, 737, 954, 967 |
| SsiI | CCGC | 1 cut(s) | 242 |
| SspDI | GGCGCC | 1 cut(s) | 125 |
| SspMI | CTAG | 4 cut(s) | 297, 344, 933, 997 |
| SstI | GAGCTC | 1 cut(s) | 603 |
| StyD4I | CCNGG | 1 cut(s) | 119 |
| TaiI | ACGT | 3 cut(s) | 447, 549, 624 |
| TaqI | TCGA | 2 cut(s) | 198, 774 |
| TasI | AATT | 7 cut(s) | 275, 300, 519, 703, 737, 954, 967 |
| TatI | WGTACW | 1 cut(s) | 691 |
| TauI | GCSGC | 1 cut(s) | 245 |
| TfiI | GAWTC | 3 cut(s) | 8, 259, 267 |
| Tru1I | TTAA | 3 cut(s) | 321, 399, 834 |
| Tru9I | TTAA | 3 cut(s) | 321, 399, 834 |
| TseI | GCWGC | 2 cut(s) | 305, 607 |
| TspDTI | ATGAA | 8 cut(s) | 78, 519, 554, 614, 707, 854, 899, 932 |
| TspGWI | ACGGA | 1 cut(s) | 368 |
| Vha464I | CTTAAG | 1 cut(s) | 398 |
| VneI | GTGCAC | 1 cut(s) | 211 |
| VpaK11BI | GGWCC | 1 cut(s) | 376 |
| VspI | ATTAAT | 1 cut(s) | 834 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 987 |
| XapI | RAATTY | 1 cut(s) | 737 |
| XbaI | TCTAGA | 1 cut(s) | 932 |
| XmnI | GAANNNNTTC | 1 cut(s) | 714 |
| XspI | CTAG | 4 cut(s) | 297, 344, 933, 997 |
| Zsp2I | ATGCAT | 1 cut(s) | 854 |