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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccB1I | GGYRCC | 1 cut(s) | 146 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 671 |
| AccII | CGCG | 1 cut(s) | 246 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 1 cut(s) | 340 |
| AclWI | GGATC | 1 cut(s) | 663 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcyI | GRCGYC | 1 cut(s) | 420 |
| AfaI | GTAC | 1 cut(s) | 355 |
| AfeI | AGCGCT | 1 cut(s) | 451 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 328, 671 |
| AjnI | CCWGG | 1 cut(s) | 514 |
| AluBI | AGCT | 3 cut(s) | 139, 161, 620 |
| AluI | AGCT | 3 cut(s) | 139, 161, 620 |
| Alw26I | GTCTC | 2 cut(s) | 73, 503 |
| AlwI | GGATC | 1 cut(s) | 663 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 671 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| Aor51HI | AGCGCT | 1 cut(s) | 451 |
| AoxI | GGCC | 1 cut(s) | 394 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspLEI | GCGC | 2 cut(s) | 248, 452 |
| AspS9I | GGNCC | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 2 cut(s) | 428, 453 |
| AvaII | GGWCC | 1 cut(s) | 203 |
| BanI | GGYRCC | 1 cut(s) | 146 |
| BbsI | GAAGAC | 1 cut(s) | 651 |
| BccI | CCATC | 2 cut(s) | 73, 447 |
| BceAI | ACGGC | 1 cut(s) | 546 |
| BciT130I | CCWGG | 1 cut(s) | 516 |
| BclI | TGATCA | 1 cut(s) | 682 |
| BcoDI | GTCTC | 2 cut(s) | 73, 503 |
| BfaI | CTAG | 3 cut(s) | 114, 297, 306 |
| BfmI | CTRYAG | 1 cut(s) | 756 |
| BfoI | RGCGCY | 1 cut(s) | 453 |
| Bme1390I | CCNGG | 1 cut(s) | 516 |
| Bme18I | GGWCC | 1 cut(s) | 203 |
| BmgT120I | GGNCC | 1 cut(s) | 203 |
| BmiI | GGNNCC | 5 cut(s) | 148, 205, 214, 362, 477 |
| BmrFI | CCNGG | 1 cut(s) | 516 |
| BmsI | GCATC | 5 cut(s) | 107, 129, 481, 551, 730 |
| BpiI | GAAGAC | 1 cut(s) | 651 |
| BsaBI | GATNNNNATC | 3 cut(s) | 38, 630, 681 |
| BsaHI | GRCGYC | 1 cut(s) | 420 |
| BsaJI | CCNNGG | 3 cut(s) | 207, 252, 364 |
| BsaWI | WCCGGW | 2 cut(s) | 226, 404 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 328, 671 |
| Bse1I | ACTGG | 1 cut(s) | 676 |
| Bse8I | GATNNNNATC | 3 cut(s) | 38, 630, 681 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseBI | CCWGG | 1 cut(s) | 516 |
| BseDI | CCNNGG | 3 cut(s) | 207, 252, 364 |
| BseGI | GGATG | 2 cut(s) | 439, 542 |
| BseJI | GATNNNNATC | 3 cut(s) | 38, 630, 681 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 328, 671 |
| BseMII | CTCAG | 1 cut(s) | 514 |
| BseNI | ACTGG | 1 cut(s) | 676 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 396 |
| BshNI | GGYRCC | 1 cut(s) | 146 |
| BsiSI | CCGG | 2 cut(s) | 227, 405 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 328, 671 |
| BsmAI | GTCTC | 2 cut(s) | 73, 503 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsnI | GGCC | 1 cut(s) | 396 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 7 cut(s) | 39, 467, 613, 625, 631, 655, 682 |
| BspACI | CCGC | 1 cut(s) | 340 |
| BspANI | GGCC | 1 cut(s) | 396 |
| BspCNI | CTCAG | 1 cut(s) | 513 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 5 cut(s) | 148, 205, 214, 362, 477 |
| BspPI | GGATC | 1 cut(s) | 663 |
| BspT107I | GGYRCC | 1 cut(s) | 146 |
| BsrI | ACTGG | 1 cut(s) | 676 |
| BssECI | CCNNGG | 3 cut(s) | 207, 252, 364 |
| BssMI | GATC | 7 cut(s) | 39, 467, 613, 625, 631, 655, 682 |
| BssNI | GRCGYC | 1 cut(s) | 420 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst2UI | CCWGG | 1 cut(s) | 516 |
| Bst4CI | ACNGT | 1 cut(s) | 365 |
| Bst6I | CTCTTC | 1 cut(s) | 377 |
| BstACI | GRCGYC | 1 cut(s) | 420 |
| BstDEI | CTNAG | 3 cut(s) | 279, 500, 635 |
| BstDSI | CCRYGG | 2 cut(s) | 207, 364 |
| BstF5I | GGATG | 2 cut(s) | 439, 542 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstH2I | RGCGCY | 1 cut(s) | 453 |
| BstHHI | GCGC | 2 cut(s) | 248, 452 |
| BstKTI | GATC | 7 cut(s) | 42, 470, 616, 628, 634, 658, 685 |
| BstMAI | GTCTC | 2 cut(s) | 73, 503 |
| BstMBI | GATC | 7 cut(s) | 39, 467, 613, 625, 631, 655, 682 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 539, 590, 749 |
| BstNI | CCWGG | 1 cut(s) | 516 |
| BstNSI | RCATGY | 1 cut(s) | 537 |
| BstSCI | CCNGG | 1 cut(s) | 514 |
| BstSFI | CTRYAG | 1 cut(s) | 756 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstV2I | GAAGAC | 1 cut(s) | 651 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 522 |
| BsuRI | GGCC | 1 cut(s) | 396 |
| BtgI | CCRYGG | 2 cut(s) | 207, 364 |
| BtgZI | GCGATG | 1 cut(s) | 106 |
| BtsCI | GGATG | 2 cut(s) | 439, 542 |
| CaiI | CAGNNNCTG | 1 cut(s) | 671 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 2 cut(s) | 248, 452 |
| Cfr13I | GGNCC | 1 cut(s) | 203 |
| CseI | GACGC | 2 cut(s) | 428, 741 |
| Csp6I | GTAC | 1 cut(s) | 354 |
| CviAII | CATG | 5 cut(s) | 134, 151, 170, 534, 601 |
| CviJI | RGCY | 6 cut(s) | 86, 139, 161, 396, 401, 620 |
| CviKI_1 | RGCY | 6 cut(s) | 86, 139, 161, 396, 401, 620 |
| CviQI | GTAC | 1 cut(s) | 354 |
| DdeI | CTNAG | 3 cut(s) | 279, 500, 635 |
| DpnI | GATC | 7 cut(s) | 41, 469, 615, 627, 633, 657, 684 |
| DpnII | GATC | 7 cut(s) | 39, 467, 613, 625, 631, 655, 682 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| Eam1104I | CTCTTC | 1 cut(s) | 377 |
| EarI | CTCTTC | 1 cut(s) | 377 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco47I | GGWCC | 1 cut(s) | 203 |
| Eco47III | AGCGCT | 1 cut(s) | 451 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoRII | CCWGG | 1 cut(s) | 514 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EcoT22I | ATGCAT | 1 cut(s) | 122 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 5 cut(s) | 137, 154, 173, 537, 604 |
| FatI | CATG | 5 cut(s) | 133, 150, 169, 533, 600 |
| FbaI | TGATCA | 1 cut(s) | 682 |
| FokI | GGATG | 2 cut(s) | 426, 529 |
| FspBI | CTAG | 3 cut(s) | 114, 297, 306 |
| GlaI | GCGC | 2 cut(s) | 247, 451 |
| HaeII | RGCGCY | 1 cut(s) | 453 |
| HaeIII | GGCC | 1 cut(s) | 396 |
| HapII | CCGG | 2 cut(s) | 227, 405 |
| HgaI | GACGC | 2 cut(s) | 428, 741 |
| HhaI | GCGC | 2 cut(s) | 248, 452 |
| Hin1I | GRCGYC | 1 cut(s) | 420 |
| Hin1II | CATG | 5 cut(s) | 137, 154, 173, 537, 604 |
| Hin6I | GCGC | 2 cut(s) | 246, 450 |
| HinP1I | GCGC | 2 cut(s) | 246, 450 |
| HinfI | GANTC | 2 cut(s) | 230, 761 |
| HpaII | CCGG | 2 cut(s) | 227, 405 |
| HphI | GGTGA | 2 cut(s) | 428, 453 |
| Hpy166II | GTNNAC | 2 cut(s) | 356, 509 |
| Hpy188I | TCNGA | 1 cut(s) | 99 |
| Hpy188III | TCNNGA | 8 cut(s) | 43, 114, 134, 201, 227, 297, 629, 659 |
| Hpy8I | GTNNAC | 2 cut(s) | 356, 509 |
| HpyAV | CCTTC | 2 cut(s) | 70, 326 |
| HpyCH4III | ACNGT | 1 cut(s) | 365 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 3 cut(s) | 74, 120, 557 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 539, 590, 749 |
| HpyF3I | CTNAG | 3 cut(s) | 279, 500, 635 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92I | GRCGYC | 1 cut(s) | 420 |
| Hsp92II | CATG | 5 cut(s) | 137, 154, 173, 537, 604 |
| HspAI | GCGC | 2 cut(s) | 246, 450 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Ksp22I | TGATCA | 1 cut(s) | 682 |
| Kzo9I | GATC | 7 cut(s) | 39, 467, 613, 625, 631, 655, 682 |
| LmnI | GCTCC | 2 cut(s) | 268, 457 |
| LpnPI | CCDG | 9 cut(s) | 186, 240, 418, 487, 492, 501, 528, 657, 678 |
| LweI | GCATC | 5 cut(s) | 107, 129, 481, 551, 730 |
| MaeI | CTAG | 3 cut(s) | 114, 297, 306 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 1 cut(s) | 416 |
| MalI | GATC | 7 cut(s) | 41, 469, 615, 627, 633, 657, 684 |
| MboI | GATC | 7 cut(s) | 39, 467, 613, 625, 631, 655, 682 |
| MboII | GAAGA | 4 cut(s) | 199, 394, 623, 656 |
| MfeI | CAATTG | 1 cut(s) | 716 |
| MluCI | AATT | 8 cut(s) | 5, 109, 141, 222, 235, 292, 595, 716 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| MnlI | CCTC | 8 cut(s) | 251, 259, 322, 362, 386, 412, 453, 474 |
| Mph1103I | ATGCAT | 1 cut(s) | 122 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MslI | CAYNNNNRTG | 2 cut(s) | 182, 489 |
| MspI | CCGG | 2 cut(s) | 227, 405 |
| MspR9I | CCNGG | 1 cut(s) | 516 |
| MunI | CAATTG | 1 cut(s) | 716 |
| MvaI | CCWGG | 1 cut(s) | 516 |
| MvnI | CGCG | 1 cut(s) | 246 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 539, 590, 749 |
| NdeII | GATC | 7 cut(s) | 39, 467, 613, 625, 631, 655, 682 |
| NlaIII | CATG | 5 cut(s) | 137, 154, 173, 537, 604 |
| NlaIV | GGNNCC | 5 cut(s) | 148, 205, 214, 362, 477 |
| NmuCI | GTSAC | 1 cut(s) | 416 |
| NsiI | ATGCAT | 1 cut(s) | 122 |
| NspI | RCATGY | 1 cut(s) | 537 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PfeI | GAWTC | 1 cut(s) | 761 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 671 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| Psp6I | CCWGG | 1 cut(s) | 514 |
| PspGI | CCWGG | 1 cut(s) | 514 |
| PspN4I | GGNNCC | 5 cut(s) | 148, 205, 214, 362, 477 |
| PspPI | GGNCC | 1 cut(s) | 203 |
| PstNI | CAGNNNCTG | 1 cut(s) | 671 |
| RsaI | GTAC | 1 cut(s) | 355 |
| RsaNI | GTAC | 1 cut(s) | 354 |
| RseI | CAYNNNNRTG | 2 cut(s) | 182, 489 |
| Sau3AI | GATC | 7 cut(s) | 39, 467, 613, 625, 631, 655, 682 |
| Sau96I | GGNCC | 1 cut(s) | 203 |
| SchI | GAGTC | 1 cut(s) | 239 |
| ScrFI | CCNGG | 1 cut(s) | 516 |
| SetI | ASST | 8 cut(s) | 62, 141, 163, 304, 466, 481, 506, 622 |
| SfaNI | GCATC | 5 cut(s) | 107, 129, 481, 551, 730 |
| SfcI | CTRYAG | 1 cut(s) | 756 |
| SinI | GGWCC | 1 cut(s) | 203 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 182, 489 |
| Sse9I | AATT | 8 cut(s) | 5, 109, 141, 222, 235, 292, 595, 716 |
| SsiI | CCGC | 1 cut(s) | 340 |
| SspMI | CTAG | 3 cut(s) | 114, 297, 306 |
| StyD4I | CCNGG | 1 cut(s) | 514 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 1 cut(s) | 365 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 3 cut(s) | 42, 466, 630 |
| TasI | AATT | 8 cut(s) | 5, 109, 141, 222, 235, 292, 595, 716 |
| TfiI | GAWTC | 1 cut(s) | 761 |
| TseFI | GTSAC | 1 cut(s) | 416 |
| Tsp45I | GTSAC | 1 cut(s) | 416 |
| TspDTI | ATGAA | 2 cut(s) | 122, 167 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 671 |
| VpaK11BI | GGWCC | 1 cut(s) | 203 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XbaI | TCTAGA | 2 cut(s) | 113, 296 |
| XceI | RCATGY | 1 cut(s) | 537 |
| XspI | CTAG | 3 cut(s) | 114, 297, 306 |
| Zsp2I | ATGCAT | 1 cut(s) | 122 |