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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 361 |
| AclWI | GGATC | 1 cut(s) | 621 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 562, 572 |
| AluI | AGCT | 4 cut(s) | 155, 161, 562, 572 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 1 cut(s) | 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AseI | ATTAAT | 2 cut(s) | 414, 500 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AsuHPI | GGTGA | 1 cut(s) | 326 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BccI | CCATC | 3 cut(s) | 215, 342, 497 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 1 cut(s) | 338 |
| BfmI | CTRYAG | 2 cut(s) | 96, 534 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmsI | GCATC | 1 cut(s) | 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 1 cut(s) | 238 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp143I | GATC | 1 cut(s) | 626 |
| BspACI | CCGC | 1 cut(s) | 361 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 2 cut(s) | 70, 556 |
| BspPI | GGATC | 1 cut(s) | 621 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 1 cut(s) | 626 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstEII | GGTNACC | 1 cut(s) | 505 |
| BstF5I | GGATG | 1 cut(s) | 238 |
| BstKTI | GATC | 1 cut(s) | 629 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 1 cut(s) | 626 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 188, 197 |
| BstPI | GGTNACC | 1 cut(s) | 505 |
| BstSFI | CTRYAG | 2 cut(s) | 96, 534 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 2 cut(s) | 70, 556 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 71, 131, 557 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| DpnI | GATC | 1 cut(s) | 628 |
| DpnII | GATC | 1 cut(s) | 626 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 3 cut(s) | 56, 76, 445 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 505 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoO65I | GGTNACC | 1 cut(s) | 505 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRV | GATATC | 3 cut(s) | 56, 76, 445 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| FaeI | CATG | 3 cut(s) | 74, 134, 560 |
| FatI | CATG | 3 cut(s) | 70, 130, 556 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FokI | GGATG | 1 cut(s) | 245 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| FspBI | CTAG | 1 cut(s) | 338 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| Hin1II | CATG | 3 cut(s) | 74, 134, 560 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 220, 236, 320, 472, 522 |
| HphI | GGTGA | 1 cut(s) | 326 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 71, 119, 386, 557, 624 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 1 cut(s) | 497 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 188, 197 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92II | CATG | 3 cut(s) | 74, 134, 560 |
| Kzo9I | GATC | 1 cut(s) | 626 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 569 |
| LpnPI | CCDG | 7 cut(s) | 23, 30, 36, 46, 257, 286, 522 |
| LweI | GCATC | 1 cut(s) | 442 |
| MaeI | CTAG | 1 cut(s) | 338 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 505, 529 |
| MalI | GATC | 1 cut(s) | 628 |
| MboI | GATC | 1 cut(s) | 626 |
| MboII | GAAGA | 7 cut(s) | 202, 275, 278, 308, 323, 481, 622 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 4 cut(s) | 17, 415, 428, 619 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 2 cut(s) | 181, 368 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 414, 422, 500 |
| MslI | CAYNNNNRTG | 1 cut(s) | 231 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 626 |
| NlaIII | CATG | 3 cut(s) | 74, 134, 560 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 70, 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 522 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PshBI | ATTAAT | 2 cut(s) | 414, 500 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| PspEI | GGTNACC | 1 cut(s) | 505 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 1 cut(s) | 231 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 500 |
| Sau3AI | GATC | 1 cut(s) | 626 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SfaNI | GCATC | 1 cut(s) | 442 |
| SfcI | CTRYAG | 2 cut(s) | 96, 534 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 231 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 415, 428, 619 |
| SsiI | CCGC | 1 cut(s) | 361 |
| SspMI | CTAG | 1 cut(s) | 338 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 5 cut(s) | 120, 294, 520, 525, 623 |
| TasI | AATT | 4 cut(s) | 17, 415, 428, 619 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 522 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 500 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 500 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 5 cut(s) | 59, 272, 276, 545, 590 |
| TspGWI | ACGGA | 2 cut(s) | 305, 619 |
| VspI | ATTAAT | 2 cut(s) | 414, 500 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 1 cut(s) | 338 |