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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 804 |
| AarI | CACCTGC | 1 cut(s) | 233 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 867 |
| Acc36I | ACCTGC | 1 cut(s) | 233 |
| AccB1I | GGYRCC | 3 cut(s) | 926, 965, 986 |
| AccBSI | CCGCTC | 1 cut(s) | 832 |
| AciI | CCGC | 4 cut(s) | 661, 832, 901, 914 |
| AcsI | RAATTY | 1 cut(s) | 406 |
| AcuI | CTGAAG | 2 cut(s) | 292, 687 |
| AcvI | CACGTG | 2 cut(s) | 923, 941 |
| AcyI | GRCGYC | 1 cut(s) | 966 |
| AdeI | CACNNNGTG | 1 cut(s) | 926 |
| AfeI | AGCGCT | 2 cut(s) | 432, 443 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 818, 889, 942 |
| AflIII | ACRYGT | 2 cut(s) | 920, 938 |
| AgsI | TTSAA | 6 cut(s) | 27, 412, 481, 488, 517, 765 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 584 |
| AjnI | CCWGG | 1 cut(s) | 10 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 429, 461 |
| AleI | CACNNNNGTG | 1 cut(s) | 188 |
| AluBI | AGCT | 4 cut(s) | 421, 601, 703, 725 |
| AluI | AGCT | 4 cut(s) | 421, 601, 703, 725 |
| Alw21I | GWGCWC | 1 cut(s) | 185 |
| Alw26I | GTCTC | 1 cut(s) | 348 |
| Aor51HI | AGCGCT | 2 cut(s) | 432, 443 |
| AoxI | GGCC | 1 cut(s) | 767 |
| ApeKI | GCWGC | 3 cut(s) | 134, 209, 245 |
| ApoI | RAATTY | 1 cut(s) | 406 |
| AspA2I | CCTAGG | 1 cut(s) | 998 |
| AspLEI | GCGC | 4 cut(s) | 433, 444, 825, 968 |
| AspS9I | GGNCC | 2 cut(s) | 768, 869 |
| AsuHPI | GGTGA | 1 cut(s) | 992 |
| AsuII | TTCGAA | 1 cut(s) | 371 |
| AvaII | GGWCC | 1 cut(s) | 869 |
| AvrII | CCTAGG | 1 cut(s) | 998 |
| BanI | GGYRCC | 3 cut(s) | 926, 965, 986 |
| BauI | CACGAG | 2 cut(s) | 688, 746 |
| BbrPI | CACGTG | 2 cut(s) | 923, 941 |
| Bbv12I | GWGCWC | 1 cut(s) | 185 |
| BbvI | GCAGC | 3 cut(s) | 146, 221, 257 |
| BccI | CCATC | 2 cut(s) | 149, 977 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 234, 268 |
| BciT130I | CCWGG | 1 cut(s) | 12 |
| BciVI | GTATCC | 1 cut(s) | 910 |
| BcoDI | GTCTC | 1 cut(s) | 348 |
| BfaI | CTAG | 2 cut(s) | 434, 999 |
| BfmI | CTRYAG | 3 cut(s) | 207, 235, 720 |
| BfoI | RGCGCY | 3 cut(s) | 434, 445, 969 |
| BfuAI | ACCTGC | 1 cut(s) | 233 |
| BfuI | GTATCC | 1 cut(s) | 910 |
| BisI | GCNGC | 3 cut(s) | 135, 210, 246 |
| BlnI | CCTAGG | 1 cut(s) | 998 |
| BlsI | GCNGC | 3 cut(s) | 136, 211, 247 |
| Bme1390I | CCNGG | 1 cut(s) | 12 |
| Bme18I | GGWCC | 1 cut(s) | 869 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 584 |
| BmgT120I | GGNCC | 2 cut(s) | 768, 869 |
| BmiI | GGNNCC | 5 cut(s) | 836, 870, 928, 967, 988 |
| BmrFI | CCNGG | 1 cut(s) | 12 |
| BmsI | GCATC | 3 cut(s) | 142, 221, 358 |
| Bpu14I | TTCGAA | 1 cut(s) | 371 |
| BsaAI | YACGTR | 2 cut(s) | 923, 941 |
| BsaBI | GATNNNNATC | 1 cut(s) | 316 |
| BsaHI | GRCGYC | 1 cut(s) | 966 |
| BsaJI | CCNNGG | 3 cut(s) | 10, 969, 998 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 937, 967, 979, 1009 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 818, 889, 942 |
| Bse3DI | GCAATG | 2 cut(s) | 73, 457 |
| Bse8I | GATNNNNATC | 1 cut(s) | 316 |
| BseBI | CCWGG | 1 cut(s) | 12 |
| BseDI | CCNNGG | 3 cut(s) | 10, 969, 998 |
| BseGI | GGATG | 1 cut(s) | 141 |
| BseJI | GATNNNNATC | 1 cut(s) | 316 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 818, 889, 942 |
| BseMI | GCAATG | 2 cut(s) | 73, 457 |
| BseMII | CTCAG | 2 cut(s) | 45, 717 |
| BseRI | GAGGAG | 1 cut(s) | 458 |
| BseXI | GCAGC | 3 cut(s) | 146, 221, 257 |
| BseYI | CCCAGC | 1 cut(s) | 91 |
| BsgI | GTGCAG | 1 cut(s) | 283 |
| BshFI | GGCC | 1 cut(s) | 769 |
| BshNI | GGYRCC | 3 cut(s) | 926, 965, 986 |
| BsiHKAI | GWGCWC | 1 cut(s) | 185 |
| BslFI | GGGAC | 2 cut(s) | 317, 873 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 818, 889, 942 |
| BsmAI | GTCTC | 1 cut(s) | 348 |
| BsmBI | CGTCTC | 1 cut(s) | 348 |
| BsmFI | GGGAC | 2 cut(s) | 317, 873 |
| BsnI | GGCC | 1 cut(s) | 769 |
| Bsp119I | TTCGAA | 1 cut(s) | 371 |
| Bsp1286I | GDGCHC | 1 cut(s) | 185 |
| Bsp143I | GATC | 4 cut(s) | 266, 298, 311, 684 |
| Bsp19I | CCATGG | 1 cut(s) | 969 |
| BspACI | CCGC | 4 cut(s) | 661, 832, 901, 914 |
| BspANI | GGCC | 1 cut(s) | 769 |
| BspCNI | CTCAG | 2 cut(s) | 44, 718 |
| BspHI | TCATGA | 1 cut(s) | 790 |
| BspLI | GGNNCC | 5 cut(s) | 836, 870, 928, 967, 988 |
| BspMAI | CTGCAG | 1 cut(s) | 211 |
| BspMI | ACCTGC | 1 cut(s) | 233 |
| BspQI | GCTCTTC | 1 cut(s) | 552 |
| BspT104I | TTCGAA | 1 cut(s) | 371 |
| BspT107I | GGYRCC | 3 cut(s) | 926, 965, 986 |
| BsrBI | CCGCTC | 1 cut(s) | 832 |
| BsrDI | GCAATG | 2 cut(s) | 73, 457 |
| BssECI | CCNNGG | 3 cut(s) | 10, 969, 998 |
| BssMI | GATC | 4 cut(s) | 266, 298, 311, 684 |
| BssNI | GRCGYC | 1 cut(s) | 966 |
| BssSI | CACGAG | 2 cut(s) | 688, 746 |
| BssT1I | CCWWGG | 2 cut(s) | 969, 998 |
| Bst2BI | CACGAG | 2 cut(s) | 688, 746 |
| Bst2UI | CCWGG | 1 cut(s) | 12 |
| Bst6I | CTCTTC | 1 cut(s) | 552 |
| BstACI | GRCGYC | 1 cut(s) | 966 |
| BstBAI | YACGTR | 2 cut(s) | 923, 941 |
| BstBI | TTCGAA | 1 cut(s) | 371 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 250 |
| BstDEI | CTNAG | 4 cut(s) | 31, 124, 726, 840 |
| BstDSI | CCRYGG | 1 cut(s) | 969 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 816 |
| BstF5I | GGATG | 1 cut(s) | 141 |
| BstH2I | RGCGCY | 3 cut(s) | 434, 445, 969 |
| BstHHI | GCGC | 4 cut(s) | 433, 444, 825, 968 |
| BstKTI | GATC | 4 cut(s) | 269, 301, 314, 687 |
| BstMAI | GTCTC | 1 cut(s) | 348 |
| BstMBI | GATC | 4 cut(s) | 266, 298, 311, 684 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 134, 439, 829 |
| BstNI | CCWGG | 1 cut(s) | 12 |
| BstNSI | RCATGY | 1 cut(s) | 907 |
| BstSCI | CCNGG | 1 cut(s) | 10 |
| BstSFI | CTRYAG | 3 cut(s) | 207, 235, 720 |
| BstV1I | GCAGC | 3 cut(s) | 146, 221, 257 |
| BsuI | GTATCC | 1 cut(s) | 910 |
| BsuRI | GGCC | 1 cut(s) | 769 |
| BtgI | CCRYGG | 1 cut(s) | 969 |
| BtsCI | GGATG | 1 cut(s) | 141 |
| BtsIMutI | CAGTG | 1 cut(s) | 663 |
| BveI | ACCTGC | 1 cut(s) | 233 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 250 |
| CciI | TCATGA | 1 cut(s) | 790 |
| CfoI | GCGC | 4 cut(s) | 433, 444, 825, 968 |
| Cfr13I | GGNCC | 2 cut(s) | 768, 869 |
| CseI | GACGC | 1 cut(s) | 551 |
| CviAII | CATG | 5 cut(s) | 562, 734, 791, 904, 970 |
| CviJI | RGCY | 9 cut(s) | 9, 128, 272, 421, 601, 638, 703, 725, 769 |
| CviKI_1 | RGCY | 9 cut(s) | 9, 128, 272, 421, 601, 638, 703, 725, 769 |
| DdeI | CTNAG | 4 cut(s) | 31, 124, 726, 840 |
| DinI | GGCGCC | 1 cut(s) | 967 |
| DpnI | GATC | 4 cut(s) | 268, 300, 313, 686 |
| DpnII | GATC | 4 cut(s) | 266, 298, 311, 684 |
| DraIII | CACNNNGTG | 1 cut(s) | 926 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 867 |
| DriI | GACNNNNNGTC | 1 cut(s) | 584 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 867 |
| Eam1104I | CTCTTC | 1 cut(s) | 552 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 584 |
| EarI | CTCTTC | 1 cut(s) | 552 |
| Eco130I | CCWWGG | 2 cut(s) | 969, 998 |
| Eco47I | GGWCC | 1 cut(s) | 869 |
| Eco47III | AGCGCT | 2 cut(s) | 432, 443 |
| Eco57I | CTGAAG | 2 cut(s) | 292, 687 |
| Eco72I | CACGTG | 2 cut(s) | 923, 941 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 816 |
| EcoRII | CCWGG | 1 cut(s) | 10 |
| EcoT14I | CCWWGG | 2 cut(s) | 969, 998 |
| EgeI | GGCGCC | 1 cut(s) | 967 |
| EheI | GGCGCC | 1 cut(s) | 967 |
| ErhI | CCWWGG | 2 cut(s) | 969, 998 |
| Esp3I | CGTCTC | 1 cut(s) | 348 |
| FaeI | CATG | 5 cut(s) | 565, 737, 794, 907, 973 |
| FaqI | GGGAC | 2 cut(s) | 317, 873 |
| FatI | CATG | 5 cut(s) | 561, 733, 790, 903, 969 |
| Fnu4HI | GCNGC | 3 cut(s) | 135, 210, 246 |
| FokI | GGATG | 1 cut(s) | 128 |
| Fsp4HI | GCNGC | 3 cut(s) | 135, 210, 246 |
| FspBI | CTAG | 2 cut(s) | 434, 999 |
| GlaI | GCGC | 4 cut(s) | 432, 443, 824, 967 |
| GluI | GCNGC | 3 cut(s) | 135, 210, 246 |
| GsaI | CCCAGC | 1 cut(s) | 95 |
| HaeII | RGCGCY | 3 cut(s) | 434, 445, 969 |
| HaeIII | GGCC | 1 cut(s) | 769 |
| HgaI | GACGC | 1 cut(s) | 551 |
| HhaI | GCGC | 4 cut(s) | 433, 444, 825, 968 |
| Hin1I | GRCGYC | 1 cut(s) | 966 |
| Hin1II | CATG | 5 cut(s) | 565, 737, 794, 907, 973 |
| Hin6I | GCGC | 4 cut(s) | 431, 442, 823, 966 |
| HinP1I | GCGC | 4 cut(s) | 431, 442, 823, 966 |
| HinfI | GANTC | 2 cut(s) | 395, 461 |
| HphI | GGTGA | 1 cut(s) | 992 |
| Hpy166II | GTNNAC | 1 cut(s) | 578 |
| Hpy188I | TCNGA | 7 cut(s) | 151, 311, 361, 389, 405, 541, 569 |
| Hpy188III | TCNNGA | 6 cut(s) | 33, 296, 302, 688, 748, 791 |
| Hpy8I | GTNNAC | 1 cut(s) | 578 |
| HpyAV | CCTTC | 5 cut(s) | 166, 331, 335, 475, 634 |
| HpyCH4IV | ACGT | 4 cut(s) | 292, 862, 922, 940 |
| HpyCH4V | TGCA | 6 cut(s) | 47, 134, 209, 264, 349, 809 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 134, 439, 829 |
| HpyF3I | CTNAG | 4 cut(s) | 31, 124, 726, 840 |
| HpySE526I | ACGT | 4 cut(s) | 292, 862, 922, 940 |
| Hsp92I | GRCGYC | 1 cut(s) | 966 |
| Hsp92II | CATG | 5 cut(s) | 565, 737, 794, 907, 973 |
| HspAI | GCGC | 4 cut(s) | 431, 442, 823, 966 |
| KasI | GGCGCC | 1 cut(s) | 965 |
| Kzo9I | GATC | 4 cut(s) | 266, 298, 311, 684 |
| LguI | GCTCTTC | 1 cut(s) | 552 |
| LmnI | GCTCC | 1 cut(s) | 829 |
| Lsp1109I | GCAGC | 3 cut(s) | 146, 221, 257 |
| LweI | GCATC | 3 cut(s) | 142, 221, 358 |
| MaeI | CTAG | 2 cut(s) | 434, 999 |
| MaeII | ACGT | 4 cut(s) | 292, 862, 922, 940 |
| MaeIII | GTNAC | 2 cut(s) | 216, 586 |
| MalI | GATC | 4 cut(s) | 268, 300, 313, 686 |
| MbiI | CCGCTC | 1 cut(s) | 832 |
| MboI | GATC | 4 cut(s) | 266, 298, 311, 684 |
| MboII | GAAGA | 4 cut(s) | 112, 344, 539, 905 |
| MhlI | GDGCHC | 1 cut(s) | 185 |
| MluCI | AATT | 7 cut(s) | 60, 367, 406, 535, 603, 760, 799 |
| Mly113I | GGCGCC | 1 cut(s) | 966 |
| MseI | TTAA | 1 cut(s) | 72 |
| MslI | CAYNNNNRTG | 2 cut(s) | 188, 746 |
| MspR9I | CCNGG | 1 cut(s) | 12 |
| MvaI | CCWGG | 1 cut(s) | 12 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 134, 439, 829 |
| NarI | GGCGCC | 1 cut(s) | 966 |
| NcoI | CCATGG | 1 cut(s) | 969 |
| NdeII | GATC | 4 cut(s) | 266, 298, 311, 684 |
| NlaIII | CATG | 5 cut(s) | 565, 737, 794, 907, 973 |
| NlaIV | GGNNCC | 5 cut(s) | 836, 870, 928, 967, 988 |
| NmuCI | GTSAC | 2 cut(s) | 216, 586 |
| NspI | RCATGY | 1 cut(s) | 907 |
| NspV | TTCGAA | 1 cut(s) | 371 |
| OliI | CACNNNNGTG | 1 cut(s) | 188 |
| PagI | TCATGA | 1 cut(s) | 790 |
| PaqCI | CACCTGC | 1 cut(s) | 233 |
| PciSI | GCTCTTC | 1 cut(s) | 552 |
| PfeI | GAWTC | 2 cut(s) | 395, 461 |
| PkrI | GCNGC | 3 cut(s) | 136, 211, 247 |
| PluTI | GGCGCC | 1 cut(s) | 969 |
| PmaCI | CACGTG | 2 cut(s) | 923, 941 |
| PmlI | CACGTG | 2 cut(s) | 923, 941 |
| Ppu21I | YACGTR | 2 cut(s) | 923, 941 |
| PsiI | TTATAA | 1 cut(s) | 804 |
| Psp6I | CCWGG | 1 cut(s) | 10 |
| PspCI | CACGTG | 2 cut(s) | 923, 941 |
| PspFI | CCCAGC | 1 cut(s) | 91 |
| PspGI | CCWGG | 1 cut(s) | 10 |
| PspN4I | GGNNCC | 5 cut(s) | 836, 870, 928, 967, 988 |
| PspPI | GGNCC | 2 cut(s) | 768, 869 |
| PstI | CTGCAG | 1 cut(s) | 211 |
| RseI | CAYNNNNRTG | 2 cut(s) | 188, 746 |
| SapI | GCTCTTC | 1 cut(s) | 552 |
| SaqAI | TTAA | 1 cut(s) | 72 |
| SatI | GCNGC | 3 cut(s) | 135, 210, 246 |
| Sau3AI | GATC | 4 cut(s) | 266, 298, 311, 684 |
| Sau96I | GGNCC | 2 cut(s) | 768, 869 |
| ScrFI | CCNGG | 1 cut(s) | 12 |
| SduI | GDGCHC | 1 cut(s) | 185 |
| SfaNI | GCATC | 3 cut(s) | 142, 221, 358 |
| SfcI | CTRYAG | 3 cut(s) | 207, 235, 720 |
| SfoI | GGCGCC | 1 cut(s) | 967 |
| SfuI | TTCGAA | 1 cut(s) | 371 |
| SinI | GGWCC | 1 cut(s) | 869 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 188, 746 |
| Sse9I | AATT | 7 cut(s) | 60, 367, 406, 535, 603, 760, 799 |
| SsiI | CCGC | 4 cut(s) | 661, 832, 901, 914 |
| SspDI | GGCGCC | 1 cut(s) | 965 |
| SspMI | CTAG | 2 cut(s) | 434, 999 |
| StyD4I | CCNGG | 1 cut(s) | 10 |
| StyI | CCWWGG | 2 cut(s) | 969, 998 |
| TaiI | ACGT | 4 cut(s) | 295, 865, 925, 943 |
| TaqI | TCGA | 1 cut(s) | 371 |
| TasI | AATT | 7 cut(s) | 60, 367, 406, 535, 603, 760, 799 |
| TfiI | GAWTC | 2 cut(s) | 395, 461 |
| Tru1I | TTAA | 1 cut(s) | 72 |
| Tru9I | TTAA | 1 cut(s) | 72 |
| TscAI | CASTG | 1 cut(s) | 670 |
| TseFI | GTSAC | 2 cut(s) | 216, 586 |
| TseI | GCWGC | 3 cut(s) | 134, 209, 245 |
| Tsp45I | GTSAC | 2 cut(s) | 216, 586 |
| TspDTI | ATGAA | 3 cut(s) | 317, 686, 779 |
| TspGWI | ACGGA | 1 cut(s) | 165 |
| TspRI | CASTG | 1 cut(s) | 670 |
| VpaK11BI | GGWCC | 1 cut(s) | 869 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 816 |
| XapI | RAATTY | 1 cut(s) | 406 |
| XceI | RCATGY | 1 cut(s) | 907 |
| XmaJI | CCTAGG | 1 cut(s) | 998 |
| XspI | CTAG | 2 cut(s) | 434, 999 |