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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 453 |
| AciI | CCGC | 2 cut(s) | 145, 697 |
| AcoI | YGGCCR | 1 cut(s) | 546 |
| AfaI | GTAC | 2 cut(s) | 168, 720 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 463, 534, 1015, 1077 |
| AflIII | ACRYGT | 1 cut(s) | 1125 |
| AgsI | TTSAA | 2 cut(s) | 160, 712 |
| AluBI | AGCT | 6 cut(s) | 11, 346, 368, 599, 898, 920 |
| AluI | AGCT | 6 cut(s) | 11, 346, 368, 599, 898, 920 |
| Alw21I | GWGCWC | 2 cut(s) | 564, 585 |
| Alw26I | GTCTC | 1 cut(s) | 813 |
| Alw44I | GTGCAC | 1 cut(s) | 560 |
| AoxI | GGCC | 2 cut(s) | 354, 546 |
| ApaLI | GTGCAC | 1 cut(s) | 560 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 189, 741 |
| AspLEI | GCGC | 1 cut(s) | 455 |
| AspS9I | GGNCC | 3 cut(s) | 16, 354, 1057 |
| AsuHPI | GGTGA | 1 cut(s) | 517 |
| AvaII | GGWCC | 2 cut(s) | 16, 1057 |
| BaeGI | GKGCMC | 1 cut(s) | 564 |
| BalI | TGGCCA | 1 cut(s) | 548 |
| Bbv12I | GWGCWC | 2 cut(s) | 564, 585 |
| BccI | CCATC | 3 cut(s) | 202, 678, 754 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 94, 128 |
| BcoDI | GTCTC | 1 cut(s) | 813 |
| BfaI | CTAG | 4 cut(s) | 8, 408, 960, 1043 |
| BfmI | CTRYAG | 1 cut(s) | 445 |
| Bme18I | GGWCC | 2 cut(s) | 16, 1057 |
| BmgT120I | GGNCC | 3 cut(s) | 16, 354, 1057 |
| BmiI | GGNNCC | 2 cut(s) | 355, 973 |
| BmsI | GCATC | 5 cut(s) | 79, 336, 457, 888, 1009 |
| BsaJI | CCNNGG | 3 cut(s) | 414, 458, 1113 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 463, 534, 1015, 1077 |
| Bse3DI | GCAATG | 3 cut(s) | 688, 867, 915 |
| BseDI | CCNNGG | 3 cut(s) | 414, 458, 1113 |
| BseGI | GGATG | 3 cut(s) | 472, 1024, 1053 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 463, 534, 1015, 1077 |
| BseMI | GCAATG | 3 cut(s) | 688, 867, 915 |
| BseMII | CTCAG | 2 cut(s) | 108, 669 |
| BseSI | GKGCMC | 1 cut(s) | 564 |
| Bsh1236I | CGCG | 1 cut(s) | 453 |
| BshFI | GGCC | 2 cut(s) | 356, 548 |
| BsiHKAI | GWGCWC | 2 cut(s) | 564, 585 |
| BslFI | GGGAC | 1 cut(s) | 18 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 463, 534, 1015, 1077 |
| BsmAI | GTCTC | 1 cut(s) | 813 |
| BsmFI | GGGAC | 1 cut(s) | 18 |
| BsnI | GGCC | 2 cut(s) | 356, 548 |
| Bsp1286I | GDGCHC | 2 cut(s) | 564, 585 |
| Bsp143I | GATC | 4 cut(s) | 131, 246, 301, 798 |
| BspACI | CCGC | 2 cut(s) | 145, 697 |
| BspANI | GGCC | 2 cut(s) | 356, 548 |
| BspCNI | CTCAG | 2 cut(s) | 109, 670 |
| BspFNI | CGCG | 1 cut(s) | 453 |
| BspHI | TCATGA | 1 cut(s) | 639 |
| BspLI | GGNNCC | 2 cut(s) | 355, 973 |
| BsrDI | GCAATG | 3 cut(s) | 688, 867, 915 |
| BssECI | CCNNGG | 3 cut(s) | 414, 458, 1113 |
| BssMI | GATC | 4 cut(s) | 131, 246, 301, 798 |
| BssT1I | CCWWGG | 2 cut(s) | 458, 1113 |
| BstC8I | GCNNGC | 1 cut(s) | 597 |
| BstDEI | CTNAG | 4 cut(s) | 117, 423, 571, 678 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstF5I | GGATG | 3 cut(s) | 472, 1024, 1053 |
| BstFNI | CGCG | 1 cut(s) | 453 |
| BstHHI | GCGC | 1 cut(s) | 455 |
| BstKTI | GATC | 4 cut(s) | 134, 249, 304, 801 |
| BstMAI | GTCTC | 1 cut(s) | 813 |
| BstMBI | GATC | 4 cut(s) | 131, 246, 301, 798 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 67, 869 |
| BstSFI | CTRYAG | 1 cut(s) | 445 |
| BstSLI | GKGCMC | 1 cut(s) | 564 |
| BstUI | CGCG | 1 cut(s) | 453 |
| BsuRI | GGCC | 2 cut(s) | 356, 548 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtsCI | GGATG | 3 cut(s) | 472, 1024, 1053 |
| BtsIMutI | CAGTG | 1 cut(s) | 231 |
| Cac8I | GCNNGC | 1 cut(s) | 597 |
| CciI | TCATGA | 1 cut(s) | 639 |
| CfoI | GCGC | 1 cut(s) | 455 |
| Cfr13I | GGNCC | 3 cut(s) | 16, 354, 1057 |
| CseI | GACGC | 1 cut(s) | 333 |
| Csp6I | GTAC | 2 cut(s) | 167, 719 |
| CviAII | CATG | 4 cut(s) | 358, 640, 652, 1106 |
| CviQI | GTAC | 2 cut(s) | 167, 719 |
| DdeI | CTNAG | 4 cut(s) | 117, 423, 571, 678 |
| DpnI | GATC | 4 cut(s) | 133, 248, 303, 800 |
| DpnII | GATC | 4 cut(s) | 131, 246, 301, 798 |
| EaeI | YGGCCR | 1 cut(s) | 546 |
| EciI | GGCGGA | 1 cut(s) | 134 |
| Eco130I | CCWWGG | 2 cut(s) | 458, 1113 |
| Eco47I | GGWCC | 2 cut(s) | 16, 1057 |
| EcoT14I | CCWWGG | 2 cut(s) | 458, 1113 |
| ErhI | CCWWGG | 2 cut(s) | 458, 1113 |
| FaeI | CATG | 4 cut(s) | 361, 643, 655, 1109 |
| FaqI | GGGAC | 1 cut(s) | 18 |
| FatI | CATG | 4 cut(s) | 357, 639, 651, 1105 |
| FokI | GGATG | 3 cut(s) | 479, 1031, 1060 |
| FspBI | CTAG | 4 cut(s) | 8, 408, 960, 1043 |
| GlaI | GCGC | 1 cut(s) | 454 |
| HaeIII | GGCC | 2 cut(s) | 356, 548 |
| HgaI | GACGC | 1 cut(s) | 333 |
| HhaI | GCGC | 1 cut(s) | 455 |
| Hin1II | CATG | 4 cut(s) | 361, 643, 655, 1109 |
| Hin6I | GCGC | 1 cut(s) | 453 |
| HinP1I | GCGC | 1 cut(s) | 453 |
| HincII | GTYRAC | 1 cut(s) | 1123 |
| HindII | GTYRAC | 1 cut(s) | 1123 |
| HinfI | GANTC | 5 cut(s) | 499, 659, 988, 1027, 1051 |
| HphI | GGTGA | 1 cut(s) | 517 |
| Hpy166II | GTNNAC | 3 cut(s) | 19, 562, 1123 |
| Hpy188I | TCNGA | 4 cut(s) | 306, 435, 858, 987 |
| Hpy188III | TCNNGA | 7 cut(s) | 250, 277, 408, 503, 640, 802, 960 |
| Hpy8I | GTNNAC | 3 cut(s) | 19, 562, 1123 |
| HpyAV | CCTTC | 6 cut(s) | 200, 277, 532, 752, 829, 1075 |
| HpyCH4IV | ACGT | 4 cut(s) | 363, 579, 915, 1125 |
| HpyCH4V | TGCA | 7 cut(s) | 293, 470, 562, 845, 872, 1022, 1105 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 67, 869 |
| HpyF3I | CTNAG | 4 cut(s) | 117, 423, 571, 678 |
| HpySE526I | ACGT | 4 cut(s) | 363, 579, 915, 1125 |
| Hsp92II | CATG | 4 cut(s) | 361, 643, 655, 1109 |
| HspAI | GCGC | 1 cut(s) | 453 |
| Kzo9I | GATC | 4 cut(s) | 131, 246, 301, 798 |
| LmnI | GCTCC | 1 cut(s) | 669 |
| LpnPI | CCDG | 9 cut(s) | 35, 129, 202, 306, 456, 497, 858, 978, 1040 |
| LweI | GCATC | 5 cut(s) | 79, 336, 457, 888, 1009 |
| MaeI | CTAG | 4 cut(s) | 8, 408, 960, 1043 |
| MaeII | ACGT | 4 cut(s) | 363, 579, 915, 1125 |
| MaeIII | GTNAC | 2 cut(s) | 1000, 1084 |
| MalI | GATC | 4 cut(s) | 133, 248, 303, 800 |
| MboI | GATC | 4 cut(s) | 131, 246, 301, 798 |
| MboII | GAAGA | 2 cut(s) | 406, 958 |
| MhlI | GDGCHC | 2 cut(s) | 564, 585 |
| MlsI | TGGCCA | 1 cut(s) | 548 |
| MluCI | AATT | 1 cut(s) | 850 |
| MluNI | TGGCCA | 1 cut(s) | 548 |
| MlyI | GAGTC | 3 cut(s) | 653, 997, 1036 |
| Mox20I | TGGCCA | 1 cut(s) | 548 |
| MroXI | GAANNNNTTC | 2 cut(s) | 189, 741 |
| MscI | TGGCCA | 1 cut(s) | 548 |
| MseI | TTAA | 2 cut(s) | 624, 891 |
| MslI | CAYNNNNRTG | 2 cut(s) | 654, 941 |
| Msp20I | TGGCCA | 1 cut(s) | 548 |
| MvnI | CGCG | 1 cut(s) | 453 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 67, 869 |
| NdeII | GATC | 4 cut(s) | 131, 246, 301, 798 |
| NlaIII | CATG | 4 cut(s) | 361, 643, 655, 1109 |
| NlaIV | GGNNCC | 2 cut(s) | 355, 973 |
| NmuCI | GTSAC | 1 cut(s) | 1000 |
| PagI | TCATGA | 1 cut(s) | 639 |
| PdmI | GAANNNNTTC | 2 cut(s) | 189, 741 |
| PfeI | GAWTC | 2 cut(s) | 499, 1051 |
| PleI | GAGTC | 3 cut(s) | 653, 996, 1035 |
| PpsI | GAGTC | 3 cut(s) | 653, 996, 1035 |
| PspN4I | GGNNCC | 2 cut(s) | 355, 973 |
| PspPI | GGNCC | 3 cut(s) | 16, 354, 1057 |
| RsaI | GTAC | 2 cut(s) | 168, 720 |
| RsaNI | GTAC | 2 cut(s) | 167, 719 |
| RseI | CAYNNNNRTG | 2 cut(s) | 654, 941 |
| SaqAI | TTAA | 2 cut(s) | 624, 891 |
| Sau3AI | GATC | 4 cut(s) | 131, 246, 301, 798 |
| Sau96I | GGNCC | 3 cut(s) | 16, 354, 1057 |
| SchI | GAGTC | 3 cut(s) | 653, 997, 1036 |
| SduI | GDGCHC | 2 cut(s) | 564, 585 |
| SfaNI | GCATC | 5 cut(s) | 79, 336, 457, 888, 1009 |
| SfcI | CTRYAG | 1 cut(s) | 445 |
| SinI | GGWCC | 2 cut(s) | 16, 1057 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 654, 941 |
| Sse9I | AATT | 1 cut(s) | 850 |
| SsiI | CCGC | 2 cut(s) | 145, 697 |
| SspI | AATATT | 1 cut(s) | 385 |
| SspMI | CTAG | 4 cut(s) | 8, 408, 960, 1043 |
| StyI | CCWWGG | 2 cut(s) | 458, 1113 |
| TaiI | ACGT | 4 cut(s) | 366, 582, 918, 1128 |
| TaqI | TCGA | 4 cut(s) | 104, 249, 504, 801 |
| TasI | AATT | 1 cut(s) | 850 |
| TatI | WGTACW | 2 cut(s) | 166, 718 |
| TfiI | GAWTC | 2 cut(s) | 499, 1051 |
| Tru1I | TTAA | 2 cut(s) | 624, 891 |
| Tru9I | TTAA | 2 cut(s) | 624, 891 |
| TscAI | CASTG | 1 cut(s) | 238 |
| TseFI | GTSAC | 1 cut(s) | 1000 |
| Tsp45I | GTSAC | 1 cut(s) | 1000 |
| TspDTI | ATGAA | 5 cut(s) | 374, 668, 687, 926, 1122 |
| TspRI | CASTG | 1 cut(s) | 238 |
| VneI | GTGCAC | 1 cut(s) | 560 |
| VpaK11BI | GGWCC | 2 cut(s) | 16, 1057 |
| XbaI | TCTAGA | 2 cut(s) | 407, 959 |
| XmnI | GAANNNNTTC | 2 cut(s) | 189, 741 |
| XspI | CTAG | 4 cut(s) | 8, 408, 960, 1043 |