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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 942 |
| AccB1I | GGYRCC | 1 cut(s) | 1118 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1586 |
| AccII | CGCG | 9 cut(s) | 64, 96, 199, 250, 327, 386, 408, 441, 788 |
| AccIII | TCCGGA | 1 cut(s) | 1198 |
| AclI | AACGTT | 1 cut(s) | 861 |
| AclWI | GGATC | 1 cut(s) | 1578 |
| AcoI | YGGCCR | 1 cut(s) | 985 |
| AcsI | RAATTY | 2 cut(s) | 569, 1264 |
| AcyI | GRCGYC | 2 cut(s) | 1119, 1392 |
| AfaI | GTAC | 1 cut(s) | 1327 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 137, 609, 811, 1300, 1586 |
| AflIII | ACRYGT | 1 cut(s) | 1348 |
| AgsI | TTSAA | 4 cut(s) | 737, 839, 925, 1059 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 695, 727 |
| Alw21I | GWGCWC | 3 cut(s) | 624, 711, 1113 |
| Alw26I | GTCTC | 4 cut(s) | 329, 443, 586, 1045 |
| AlwI | GGATC | 1 cut(s) | 1578 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1586 |
| Ama87I | CYCGRG | 3 cut(s) | 155, 332, 446 |
| Aor13HI | TCCGGA | 1 cut(s) | 1198 |
| AoxI | GGCC | 7 cut(s) | 139, 192, 231, 328, 442, 498, 985 |
| ApoI | RAATTY | 2 cut(s) | 569, 1264 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 954 |
| AspLEI | GCGC | 5 cut(s) | 368, 465, 790, 1121, 1220 |
| AspS9I | GGNCC | 3 cut(s) | 140, 232, 1280 |
| AsuHPI | GGTGA | 1 cut(s) | 1400 |
| AvaI | CYCGRG | 3 cut(s) | 155, 332, 446 |
| AvaII | GGWCC | 1 cut(s) | 1280 |
| BalI | TGGCCA | 1 cut(s) | 987 |
| BanI | GGYRCC | 1 cut(s) | 1118 |
| BanII | GRGCYC | 1 cut(s) | 1113 |
| BbsI | GAAGAC | 3 cut(s) | 822, 1025, 1566 |
| Bbv12I | GWGCWC | 3 cut(s) | 624, 711, 1113 |
| BccI | CCATC | 6 cut(s) | 662, 692, 764, 891, 967, 1529 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 305, 339, 419, 453 |
| BcoDI | GTCTC | 4 cut(s) | 329, 443, 586, 1045 |
| BfaI | CTAG | 3 cut(s) | 24, 696, 1173 |
| BfmI | CTRYAG | 3 cut(s) | 85, 417, 1210 |
| BfoI | RGCGCY | 3 cut(s) | 369, 466, 1122 |
| Bme18I | GGWCC | 1 cut(s) | 1280 |
| BmeT110I | CYCGRG | 3 cut(s) | 155, 332, 446 |
| BmgT120I | GGNCC | 3 cut(s) | 140, 232, 1280 |
| BmiI | GGNNCC | 5 cut(s) | 234, 1120, 1334, 1372, 1449 |
| BpiI | GAAGAC | 3 cut(s) | 822, 1025, 1566 |
| BpuEI | CTTGAG | 2 cut(s) | 737, 863 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1539, 1545 |
| BsaHI | GRCGYC | 2 cut(s) | 1119, 1392 |
| BsaI | GGTCTC | 1 cut(s) | 586 |
| BsaJI | CCNNGG | 3 cut(s) | 154, 1179, 1336 |
| BsaWI | WCCGGW | 1 cut(s) | 1198 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 262, 284, 292, 314, 695, 725 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 137, 609, 811, 1300, 1586 |
| Bse1I | ACTGG | 1 cut(s) | 1591 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1539, 1545 |
| BseAI | TCCGGA | 1 cut(s) | 1198 |
| BseDI | CCNNGG | 3 cut(s) | 154, 1179, 1336 |
| BseJI | GATNNNNATC | 2 cut(s) | 1539, 1545 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 137, 609, 811, 1300, 1586 |
| BseNI | ACTGG | 1 cut(s) | 1591 |
| BseYI | CCCAGC | 1 cut(s) | 544 |
| BsgI | GTGCAG | 1 cut(s) | 521 |
| Bsh1236I | CGCG | 9 cut(s) | 64, 96, 199, 250, 327, 386, 408, 441, 788 |
| BshFI | GGCC | 7 cut(s) | 141, 194, 233, 330, 444, 500, 987 |
| BshNI | GGYRCC | 1 cut(s) | 1118 |
| BsiHKAI | GWGCWC | 3 cut(s) | 624, 711, 1113 |
| BsiHKCI | CYCGRG | 3 cut(s) | 155, 332, 446 |
| BsiSI | CCGG | 2 cut(s) | 1199, 1377 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 137, 609, 811, 1300, 1586 |
| BsmAI | GTCTC | 4 cut(s) | 329, 443, 586, 1045 |
| BsmBI | CGTCTC | 1 cut(s) | 1045 |
| BsmI | GAATGC | 2 cut(s) | 4, 219 |
| BsnI | GGCC | 7 cut(s) | 141, 194, 233, 330, 444, 500, 987 |
| Bso31I | GGTCTC | 1 cut(s) | 586 |
| BsoBI | CYCGRG | 3 cut(s) | 155, 332, 446 |
| Bsp1286I | GDGCHC | 3 cut(s) | 624, 711, 1113 |
| Bsp13I | TCCGGA | 1 cut(s) | 1198 |
| Bsp143I | GATC | 5 cut(s) | 1439, 1528, 1540, 1546, 1570 |
| Bsp68I | TCGCGA | 2 cut(s) | 199, 250 |
| BspANI | GGCC | 7 cut(s) | 141, 194, 233, 330, 444, 500, 987 |
| BspEI | TCCGGA | 1 cut(s) | 1198 |
| BspFNI | CGCG | 9 cut(s) | 64, 96, 199, 250, 327, 386, 408, 441, 788 |
| BspHI | TCATGA | 2 cut(s) | 765, 1105 |
| BspLI | GGNNCC | 5 cut(s) | 234, 1120, 1334, 1372, 1449 |
| BspMAI | CTGCAG | 1 cut(s) | 89 |
| BspPI | GGATC | 1 cut(s) | 1578 |
| BspQI | GCTCTTC | 1 cut(s) | 960 |
| BspT107I | GGYRCC | 1 cut(s) | 1118 |
| BspTNI | GGTCTC | 1 cut(s) | 586 |
| BsrI | ACTGG | 1 cut(s) | 1591 |
| BssECI | CCNNGG | 3 cut(s) | 154, 1179, 1336 |
| BssMI | GATC | 5 cut(s) | 1439, 1528, 1540, 1546, 1570 |
| BssNI | GRCGYC | 2 cut(s) | 1119, 1392 |
| Bst4CI | ACNGT | 7 cut(s) | 151, 243, 379, 476, 609, 1337, 1555 |
| Bst6I | CTCTTC | 2 cut(s) | 960, 1349 |
| BstACI | GRCGYC | 2 cut(s) | 1119, 1392 |
| BstC8I | GCNNGC | 1 cut(s) | 723 |
| BstDEI | CTNAG | 3 cut(s) | 659, 1224, 1251 |
| BstDSI | CCRYGG | 2 cut(s) | 1179, 1336 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 809 |
| BstFNI | CGCG | 9 cut(s) | 64, 96, 199, 250, 327, 386, 408, 441, 788 |
| BstH2I | RGCGCY | 3 cut(s) | 369, 466, 1122 |
| BstHHI | GCGC | 5 cut(s) | 368, 465, 790, 1121, 1220 |
| BstKTI | GATC | 5 cut(s) | 1442, 1531, 1543, 1549, 1573 |
| BstMAI | GTCTC | 4 cut(s) | 329, 443, 586, 1045 |
| BstMBI | GATC | 5 cut(s) | 1439, 1528, 1540, 1546, 1570 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 84, 93, 124, 216, 352, 737, 746, 1430, 1505 |
| BstNSI | RCATGY | 1 cut(s) | 1352 |
| BstSFI | CTRYAG | 3 cut(s) | 85, 417, 1210 |
| BstUI | CGCG | 9 cut(s) | 64, 96, 199, 250, 327, 386, 408, 441, 788 |
| BstV2I | GAAGAC | 3 cut(s) | 822, 1025, 1566 |
| BsuRI | GGCC | 7 cut(s) | 141, 194, 233, 330, 444, 500, 987 |
| BtgI | CCRYGG | 2 cut(s) | 1179, 1336 |
| BtgZI | GCGATG | 1 cut(s) | 910 |
| BtsI | GCAGTG | 2 cut(s) | 234, 533 |
| BtsIMutI | CAGTG | 3 cut(s) | 234, 533, 1560 |
| BtuMI | TCGCGA | 2 cut(s) | 199, 250 |
| Cac8I | GCNNGC | 1 cut(s) | 723 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1586 |
| CciI | TCATGA | 2 cut(s) | 765, 1105 |
| CfoI | GCGC | 5 cut(s) | 368, 465, 790, 1121, 1220 |
| Cfr13I | GGNCC | 3 cut(s) | 140, 232, 1280 |
| CseI | GACGC | 4 cut(s) | 794, 1098, 1242, 1400 |
| Csp6I | GTAC | 1 cut(s) | 1326 |
| CviAII | CATG | 8 cut(s) | 766, 778, 1106, 1123, 1316, 1349, 1421, 1516 |
| CviQI | GTAC | 1 cut(s) | 1326 |
| DdeI | CTNAG | 3 cut(s) | 659, 1224, 1251 |
| DinI | GGCGCC | 1 cut(s) | 1120 |
| DpnI | GATC | 5 cut(s) | 1441, 1530, 1542, 1548, 1572 |
| DpnII | GATC | 5 cut(s) | 1439, 1528, 1540, 1546, 1570 |
| DraI | TTTAAA | 1 cut(s) | 585 |
| EaeI | YGGCCR | 1 cut(s) | 985 |
| Eam1104I | CTCTTC | 2 cut(s) | 960, 1349 |
| EarI | CTCTTC | 2 cut(s) | 960, 1349 |
| EciI | GGCGGA | 1 cut(s) | 1383 |
| Ecl136II | GAGCTC | 1 cut(s) | 1111 |
| Eco24I | GRGCYC | 1 cut(s) | 1113 |
| Eco31I | GGTCTC | 1 cut(s) | 586 |
| Eco47I | GGWCC | 1 cut(s) | 1280 |
| Eco53kI | GAGCTC | 1 cut(s) | 1111 |
| Eco88I | CYCGRG | 3 cut(s) | 155, 332, 446 |
| EcoICRI | GAGCTC | 1 cut(s) | 1111 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 809 |
| EcoRI | GAATTC | 1 cut(s) | 569 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 1113 |
| EgeI | GGCGCC | 1 cut(s) | 1120 |
| EheI | GGCGCC | 1 cut(s) | 1120 |
| Esp3I | CGTCTC | 1 cut(s) | 1045 |
| FaeI | CATG | 8 cut(s) | 769, 781, 1109, 1126, 1319, 1352, 1424, 1519 |
| FatI | CATG | 8 cut(s) | 765, 777, 1105, 1122, 1315, 1348, 1420, 1515 |
| FriOI | GRGCYC | 1 cut(s) | 1113 |
| FspBI | CTAG | 3 cut(s) | 24, 696, 1173 |
| GlaI | GCGC | 5 cut(s) | 367, 464, 789, 1120, 1219 |
| GsaI | CCCAGC | 1 cut(s) | 548 |
| HaeII | RGCGCY | 3 cut(s) | 369, 466, 1122 |
| HaeIII | GGCC | 7 cut(s) | 141, 194, 233, 330, 444, 500, 987 |
| HapII | CCGG | 2 cut(s) | 1199, 1377 |
| HgaI | GACGC | 4 cut(s) | 794, 1098, 1242, 1400 |
| HhaI | GCGC | 5 cut(s) | 368, 465, 790, 1121, 1220 |
| Hin1I | GRCGYC | 2 cut(s) | 1119, 1392 |
| Hin1II | CATG | 8 cut(s) | 769, 781, 1109, 1126, 1319, 1352, 1424, 1519 |
| Hin6I | GCGC | 5 cut(s) | 366, 463, 788, 1119, 1218 |
| HinP1I | GCGC | 5 cut(s) | 366, 463, 788, 1119, 1218 |
| HincII | GTYRAC | 1 cut(s) | 1346 |
| HindII | GTYRAC | 1 cut(s) | 1346 |
| HindIII | AAGCTT | 1 cut(s) | 631 |
| HinfI | GANTC | 4 cut(s) | 647, 869, 1021, 1202 |
| HpaII | CCGG | 2 cut(s) | 1199, 1377 |
| HphI | GGTGA | 1 cut(s) | 1400 |
| Hpy166II | GTNNAC | 1 cut(s) | 1346 |
| Hpy188I | TCNGA | 4 cut(s) | 575, 702, 949, 1071 |
| Hpy8I | GTNNAC | 1 cut(s) | 1346 |
| HpyAV | CCTTC | 2 cut(s) | 1042, 1298 |
| HpyCH4III | ACNGT | 7 cut(s) | 151, 243, 379, 476, 609, 1337, 1555 |
| HpyCH4IV | ACGT | 4 cut(s) | 705, 861, 1128, 1487 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 87, 146, 538, 1424, 1472 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 84, 93, 124, 216, 352, 737, 746, 1430, 1505 |
| HpyF3I | CTNAG | 3 cut(s) | 659, 1224, 1251 |
| HpySE526I | ACGT | 4 cut(s) | 705, 861, 1128, 1487 |
| Hsp92I | GRCGYC | 2 cut(s) | 1119, 1392 |
| Hsp92II | CATG | 8 cut(s) | 769, 781, 1109, 1126, 1319, 1352, 1424, 1519 |
| HspAI | GCGC | 5 cut(s) | 366, 463, 788, 1119, 1218 |
| KasI | GGCGCC | 1 cut(s) | 1118 |
| Kpn2I | TCCGGA | 1 cut(s) | 1198 |
| Kzo9I | GATC | 5 cut(s) | 1439, 1528, 1540, 1546, 1570 |
| LguI | GCTCTTC | 1 cut(s) | 960 |
| LmnI | GCTCC | 5 cut(s) | 637, 795, 1240, 1370, 1447 |
| MaeI | CTAG | 3 cut(s) | 24, 696, 1173 |
| MaeII | ACGT | 4 cut(s) | 705, 861, 1128, 1487 |
| MaeIII | GTNAC | 2 cut(s) | 866, 1388 |
| MalI | GATC | 5 cut(s) | 1441, 1530, 1542, 1548, 1572 |
| MboI | GATC | 5 cut(s) | 1439, 1528, 1540, 1546, 1570 |
| MboII | GAAGA | 7 cut(s) | 827, 947, 1030, 1171, 1366, 1538, 1571 |
| MhlI | GDGCHC | 3 cut(s) | 624, 711, 1113 |
| MlsI | TGGCCA | 1 cut(s) | 987 |
| MluCI | AATT | 5 cut(s) | 553, 569, 1063, 1264, 1510 |
| MluNI | TGGCCA | 1 cut(s) | 987 |
| Mly113I | GGCGCC | 1 cut(s) | 1119 |
| MlyI | GAGTC | 3 cut(s) | 656, 863, 1015 |
| MmeI | TCCRAC | 1 cut(s) | 598 |
| Mox20I | TGGCCA | 1 cut(s) | 987 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 1 cut(s) | 1198 |
| MroXI | GAANNNNTTC | 1 cut(s) | 954 |
| MscI | TGGCCA | 1 cut(s) | 987 |
| MseI | TTAA | 3 cut(s) | 584, 1014, 1600 |
| MslI | CAYNNNNRTG | 3 cut(s) | 764, 780, 1154 |
| Msp20I | TGGCCA | 1 cut(s) | 987 |
| MspA1I | CMGCKG | 3 cut(s) | 78, 138, 497 |
| MspI | CCGG | 2 cut(s) | 1199, 1377 |
| Mva1269I | GAATGC | 2 cut(s) | 4, 219 |
| MvnI | CGCG | 9 cut(s) | 64, 96, 199, 250, 327, 386, 408, 441, 788 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 84, 93, 124, 216, 352, 737, 746, 1430, 1505 |
| NarI | GGCGCC | 1 cut(s) | 1119 |
| NdeII | GATC | 5 cut(s) | 1439, 1528, 1540, 1546, 1570 |
| NlaIII | CATG | 8 cut(s) | 769, 781, 1109, 1126, 1319, 1352, 1424, 1519 |
| NlaIV | GGNNCC | 5 cut(s) | 234, 1120, 1334, 1372, 1449 |
| NmuCI | GTSAC | 2 cut(s) | 866, 1388 |
| NruI | TCGCGA | 2 cut(s) | 199, 250 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 1352 |
| PaeR7I | CTCGAG | 2 cut(s) | 332, 446 |
| PagI | TCATGA | 2 cut(s) | 765, 1105 |
| PciI | ACATGT | 1 cut(s) | 1348 |
| PciSI | GCTCTTC | 1 cut(s) | 960 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1176 |
| PctI | GAATGC | 2 cut(s) | 4, 219 |
| PdmI | GAANNNNTTC | 1 cut(s) | 954 |
| PfeI | GAWTC | 1 cut(s) | 1202 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1586 |
| PleI | GAGTC | 3 cut(s) | 655, 863, 1015 |
| PluTI | GGCGCC | 1 cut(s) | 1122 |
| PpsI | GAGTC | 3 cut(s) | 655, 863, 1015 |
| PscI | ACATGT | 1 cut(s) | 1348 |
| PsiI | TTATAA | 1 cut(s) | 942 |
| Psp124BI | GAGCTC | 1 cut(s) | 1113 |
| Psp1406I | AACGTT | 1 cut(s) | 861 |
| PspFI | CCCAGC | 1 cut(s) | 544 |
| PspN4I | GGNNCC | 5 cut(s) | 234, 1120, 1334, 1372, 1449 |
| PspPI | GGNCC | 3 cut(s) | 140, 232, 1280 |
| PstI | CTGCAG | 1 cut(s) | 89 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1586 |
| PvuII | CAGCTG | 1 cut(s) | 78 |
| RruI | TCGCGA | 2 cut(s) | 199, 250 |
| RsaI | GTAC | 1 cut(s) | 1327 |
| RsaNI | GTAC | 1 cut(s) | 1326 |
| RseI | CAYNNNNRTG | 3 cut(s) | 764, 780, 1154 |
| SacI | GAGCTC | 1 cut(s) | 1113 |
| SapI | GCTCTTC | 1 cut(s) | 960 |
| SaqAI | TTAA | 3 cut(s) | 584, 1014, 1600 |
| Sau3AI | GATC | 5 cut(s) | 1439, 1528, 1540, 1546, 1570 |
| Sau96I | GGNCC | 3 cut(s) | 140, 232, 1280 |
| SchI | GAGTC | 3 cut(s) | 656, 863, 1015 |
| SduI | GDGCHC | 3 cut(s) | 624, 711, 1113 |
| SfcI | CTRYAG | 3 cut(s) | 85, 417, 1210 |
| SfoI | GGCGCC | 1 cut(s) | 1120 |
| Sfr274I | CTCGAG | 2 cut(s) | 332, 446 |
| SinI | GGWCC | 1 cut(s) | 1280 |
| SlaI | CTCGAG | 2 cut(s) | 332, 446 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 764, 780, 1154 |
| SmlI | CTYRAG | 4 cut(s) | 332, 446, 716, 842 |
| SmoI | CTYRAG | 4 cut(s) | 332, 446, 716, 842 |
| Sse9I | AATT | 5 cut(s) | 553, 569, 1063, 1264, 1510 |
| SspDI | GGCGCC | 1 cut(s) | 1118 |
| SspMI | CTAG | 3 cut(s) | 24, 696, 1173 |
| SstI | GAGCTC | 1 cut(s) | 1113 |
| TaaI | ACNGT | 7 cut(s) | 151, 243, 379, 476, 609, 1337, 1555 |
| TaiI | ACGT | 4 cut(s) | 708, 864, 1131, 1490 |
| TaqI | TCGA | 5 cut(s) | 333, 447, 653, 1438, 1545 |
| TasI | AATT | 5 cut(s) | 553, 569, 1063, 1264, 1510 |
| TauI | GCSGC | 8 cut(s) | 99, 141, 194, 330, 389, 444, 486, 500 |
| TfiI | GAWTC | 1 cut(s) | 1202 |
| Tru1I | TTAA | 3 cut(s) | 584, 1014, 1600 |
| Tru9I | TTAA | 3 cut(s) | 584, 1014, 1600 |
| TscAI | CASTG | 3 cut(s) | 234, 540, 1560 |
| TseFI | GTSAC | 2 cut(s) | 866, 1388 |
| Tsp45I | GTSAC | 2 cut(s) | 866, 1388 |
| TspDTI | ATGAA | 3 cut(s) | 794, 1094, 1139 |
| TspRI | CASTG | 3 cut(s) | 234, 540, 1560 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1586 |
| VpaK11BI | GGWCC | 1 cut(s) | 1280 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 809 |
| XapI | RAATTY | 2 cut(s) | 569, 1264 |
| XceI | RCATGY | 1 cut(s) | 1352 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 828 |
| XhoI | CTCGAG | 2 cut(s) | 332, 446 |
| XmnI | GAANNNNTTC | 1 cut(s) | 954 |
| XspI | CTAG | 3 cut(s) | 24, 696, 1173 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |