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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 471 |
| AccB1I | GGYRCC | 1 cut(s) | 426 |
| AccII | CGCG | 1 cut(s) | 411 |
| AciI | CCGC | 2 cut(s) | 505, 517 |
| AclWI | GGATC | 2 cut(s) | 293, 319 |
| AcsI | RAATTY | 1 cut(s) | 272 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 422 |
| AgsI | TTSAA | 1 cut(s) | 220 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 132, 164 |
| AluBI | AGCT | 4 cut(s) | 44, 50, 227, 304 |
| AluI | AGCT | 4 cut(s) | 44, 50, 227, 304 |
| Alw21I | GWGCWC | 1 cut(s) | 306 |
| Alw26I | GTCTC | 2 cut(s) | 136, 361 |
| AlwI | GGATC | 2 cut(s) | 293, 319 |
| Ama87I | CYCGRG | 1 cut(s) | 115 |
| ApoI | RAATTY | 1 cut(s) | 272 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 249 |
| AspLEI | GCGC | 1 cut(s) | 413 |
| AspS9I | GGNCC | 1 cut(s) | 473 |
| AvaI | CYCGRG | 1 cut(s) | 115 |
| AvaII | GGWCC | 1 cut(s) | 473 |
| AxyI | CCTNAGG | 1 cut(s) | 417 |
| BaeGI | GKGCMC | 1 cut(s) | 429 |
| BanI | GGYRCC | 1 cut(s) | 426 |
| BanII | GRGCYC | 1 cut(s) | 306 |
| BbsI | GAAGAC | 1 cut(s) | 117 |
| Bbv12I | GWGCWC | 1 cut(s) | 306 |
| BccI | CCATC | 1 cut(s) | 186 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 2 cut(s) | 136, 361 |
| BfaI | CTAG | 3 cut(s) | 15, 182, 450 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BlpI | GCTNAGC | 1 cut(s) | 36 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 1 cut(s) | 473 |
| BmeT110I | CYCGRG | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 1 cut(s) | 473 |
| BmiI | GGNNCC | 1 cut(s) | 428 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BpiI | GAAGAC | 1 cut(s) | 117 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 36 |
| BpuEI | CTTGAG | 2 cut(s) | 29, 30 |
| BsaI | GGTCTC | 2 cut(s) | 136, 361 |
| BsaJI | CCNNGG | 1 cut(s) | 372 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 422 |
| Bse21I | CCTNAGG | 1 cut(s) | 417 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseDI | CCNNGG | 1 cut(s) | 372 |
| BseGI | GGATG | 1 cut(s) | 342 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 422 |
| BseMII | CTCAG | 1 cut(s) | 27 |
| BseSI | GKGCMC | 1 cut(s) | 429 |
| Bsh1236I | CGCG | 1 cut(s) | 411 |
| BshNI | GGYRCC | 1 cut(s) | 426 |
| BsiHKAI | GWGCWC | 1 cut(s) | 306 |
| BsiHKCI | CYCGRG | 1 cut(s) | 115 |
| BslFI | GGGAC | 1 cut(s) | 467 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 422 |
| BsmAI | GTCTC | 2 cut(s) | 136, 361 |
| BsmFI | GGGAC | 1 cut(s) | 467 |
| Bso31I | GGTCTC | 2 cut(s) | 136, 361 |
| BsoBI | CYCGRG | 1 cut(s) | 115 |
| Bsp1286I | GDGCHC | 2 cut(s) | 306, 429 |
| Bsp143I | GATC | 2 cut(s) | 285, 311 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 36 |
| Bsp19I | CCATGG | 1 cut(s) | 372 |
| BspACI | CCGC | 2 cut(s) | 505, 517 |
| BspCNI | CTCAG | 1 cut(s) | 28 |
| BspFNI | CGCG | 1 cut(s) | 411 |
| BspHI | TCATGA | 1 cut(s) | 298 |
| BspLI | GGNNCC | 1 cut(s) | 428 |
| BspPI | GGATC | 2 cut(s) | 293, 319 |
| BspT107I | GGYRCC | 1 cut(s) | 426 |
| BspTNI | GGTCTC | 2 cut(s) | 136, 361 |
| BssECI | CCNNGG | 1 cut(s) | 372 |
| BssMI | GATC | 2 cut(s) | 285, 311 |
| BssT1I | CCWWGG | 1 cut(s) | 372 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst6I | CTCTTC | 1 cut(s) | 212 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 2 cut(s) | 36, 417 |
| BstDSI | CCRYGG | 1 cut(s) | 372 |
| BstEII | GGTNACC | 1 cut(s) | 500 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 420 |
| BstF5I | GGATG | 1 cut(s) | 342 |
| BstFNI | CGCG | 1 cut(s) | 411 |
| BstHHI | GCGC | 1 cut(s) | 413 |
| BstKTI | GATC | 2 cut(s) | 288, 314 |
| BstMAI | GTCTC | 2 cut(s) | 136, 361 |
| BstMBI | GATC | 2 cut(s) | 285, 311 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 41, 77, 86, 433 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstPI | GGTNACC | 1 cut(s) | 500 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSLI | GKGCMC | 1 cut(s) | 429 |
| BstUI | CGCG | 1 cut(s) | 411 |
| BstV2I | GAAGAC | 1 cut(s) | 117 |
| BstX2I | RGATCY | 1 cut(s) | 311 |
| BstYI | RGATCY | 1 cut(s) | 311 |
| Bsu36I | CCTNAGG | 1 cut(s) | 417 |
| BtgI | CCRYGG | 1 cut(s) | 372 |
| BtsCI | GGATG | 1 cut(s) | 342 |
| BtsIMutI | CAGTG | 1 cut(s) | 324 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CciI | TCATGA | 1 cut(s) | 298 |
| CfoI | GCGC | 1 cut(s) | 413 |
| Cfr13I | GGNCC | 1 cut(s) | 473 |
| CviAII | CATG | 4 cut(s) | 299, 335, 373, 522 |
| CviJI | RGCY | 8 cut(s) | 13, 18, 44, 50, 71, 227, 304, 385 |
| CviKI_1 | RGCY | 8 cut(s) | 13, 18, 44, 50, 71, 227, 304, 385 |
| DdeI | CTNAG | 2 cut(s) | 36, 417 |
| DpnI | GATC | 2 cut(s) | 287, 313 |
| DpnII | GATC | 2 cut(s) | 285, 311 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 471 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 471 |
| Eam1104I | CTCTTC | 1 cut(s) | 212 |
| EarI | CTCTTC | 1 cut(s) | 212 |
| Ecl136II | GAGCTC | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 1 cut(s) | 372 |
| Eco24I | GRGCYC | 1 cut(s) | 306 |
| Eco31I | GGTCTC | 2 cut(s) | 136, 361 |
| Eco47I | GGWCC | 1 cut(s) | 473 |
| Eco53kI | GAGCTC | 1 cut(s) | 304 |
| Eco81I | CCTNAGG | 1 cut(s) | 417 |
| Eco88I | CYCGRG | 1 cut(s) | 115 |
| Eco91I | GGTNACC | 1 cut(s) | 500 |
| EcoICRI | GAGCTC | 1 cut(s) | 304 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 420 |
| EcoO65I | GGTNACC | 1 cut(s) | 500 |
| EcoRI | GAATTC | 1 cut(s) | 272 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT14I | CCWWGG | 1 cut(s) | 372 |
| EcoT38I | GRGCYC | 1 cut(s) | 306 |
| ErhI | CCWWGG | 1 cut(s) | 372 |
| FaeI | CATG | 4 cut(s) | 302, 338, 376, 525 |
| FaqI | GGGAC | 1 cut(s) | 467 |
| FatI | CATG | 4 cut(s) | 298, 334, 372, 521 |
| FokI | GGATG | 1 cut(s) | 329 |
| FriOI | GRGCYC | 1 cut(s) | 306 |
| FspBI | CTAG | 3 cut(s) | 15, 182, 450 |
| GlaI | GCGC | 1 cut(s) | 412 |
| HhaI | GCGC | 1 cut(s) | 413 |
| Hin1II | CATG | 4 cut(s) | 302, 338, 376, 525 |
| Hin6I | GCGC | 1 cut(s) | 411 |
| HinP1I | GCGC | 1 cut(s) | 411 |
| HindIII | AAGCTT | 1 cut(s) | 48 |
| HinfI | GANTC | 3 cut(s) | 4, 164, 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 2 cut(s) | 102, 244 |
| Hpy188III | TCNNGA | 7 cut(s) | 8, 176, 220, 230, 299, 366, 392 |
| Hpy8I | GTNNAC | 1 cut(s) | 281 |
| HpyAV | CCTTC | 1 cut(s) | 491 |
| HpyCH4IV | ACGT | 1 cut(s) | 466 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 41, 77, 86, 433 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 417 |
| HpySE526I | ACGT | 1 cut(s) | 466 |
| Hsp92II | CATG | 4 cut(s) | 302, 338, 376, 525 |
| HspAI | GCGC | 1 cut(s) | 411 |
| Kzo9I | GATC | 2 cut(s) | 285, 311 |
| LpnPI | CCDG | 6 cut(s) | 5, 32, 182, 189, 405, 456 |
| MaeI | CTAG | 3 cut(s) | 15, 182, 450 |
| MaeII | ACGT | 1 cut(s) | 466 |
| MaeIII | GTNAC | 3 cut(s) | 161, 322, 500 |
| MalI | GATC | 2 cut(s) | 287, 313 |
| MboI | GATC | 2 cut(s) | 285, 311 |
| MboII | GAAGA | 6 cut(s) | 68, 119, 122, 152, 199, 364 |
| MflI | RGATCY | 1 cut(s) | 311 |
| MhlI | GDGCHC | 2 cut(s) | 306, 429 |
| MluCI | AATT | 4 cut(s) | 272, 361, 400, 457 |
| MlyI | GAGTC | 2 cut(s) | 158, 404 |
| MnlI | CCTC | 1 cut(s) | 416 |
| MroXI | GAANNNNTTC | 1 cut(s) | 249 |
| MseI | TTAA | 4 cut(s) | 75, 258, 266, 492 |
| MslI | CAYNNNNRTG | 1 cut(s) | 347 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MvnI | CGCG | 1 cut(s) | 411 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 41, 77, 86, 433 |
| NcoI | CCATGG | 1 cut(s) | 372 |
| NdeII | GATC | 2 cut(s) | 285, 311 |
| NlaIII | CATG | 4 cut(s) | 302, 338, 376, 525 |
| NlaIV | GGNNCC | 1 cut(s) | 428 |
| NmuCI | GTSAC | 2 cut(s) | 161, 322 |
| PagI | TCATGA | 1 cut(s) | 298 |
| PdmI | GAANNNNTTC | 1 cut(s) | 249 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PleI | GAGTC | 2 cut(s) | 158, 403 |
| PpsI | GAGTC | 2 cut(s) | 158, 403 |
| Psp124BI | GAGCTC | 1 cut(s) | 306 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspEI | GGTNACC | 1 cut(s) | 500 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 1 cut(s) | 428 |
| PspPI | GGNCC | 1 cut(s) | 473 |
| PsuI | RGATCY | 1 cut(s) | 311 |
| RseI | CAYNNNNRTG | 1 cut(s) | 347 |
| SacI | GAGCTC | 1 cut(s) | 306 |
| SaqAI | TTAA | 4 cut(s) | 75, 258, 266, 492 |
| Sau3AI | GATC | 2 cut(s) | 285, 311 |
| Sau96I | GGNCC | 1 cut(s) | 473 |
| SchI | GAGTC | 2 cut(s) | 158, 404 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 2 cut(s) | 306, 429 |
| SetI | ASST | 9 cut(s) | 46, 52, 183, 204, 229, 296, 306, 469, 502 |
| SinI | GGWCC | 1 cut(s) | 473 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 347 |
| SmlI | CTYRAG | 2 cut(s) | 8, 45 |
| SmoI | CTYRAG | 2 cut(s) | 8, 45 |
| Sse9I | AATT | 4 cut(s) | 272, 361, 400, 457 |
| SsiI | CCGC | 2 cut(s) | 505, 517 |
| SspMI | CTAG | 3 cut(s) | 15, 182, 450 |
| SstI | GAGCTC | 1 cut(s) | 306 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| StyI | CCWWGG | 1 cut(s) | 372 |
| TaiI | ACGT | 1 cut(s) | 469 |
| TaqI | TCGA | 2 cut(s) | 138, 365 |
| TasI | AATT | 4 cut(s) | 272, 361, 400, 457 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 4 cut(s) | 75, 258, 266, 492 |
| Tru9I | TTAA | 4 cut(s) | 75, 258, 266, 492 |
| TscAI | CASTG | 1 cut(s) | 331 |
| TseFI | GTSAC | 2 cut(s) | 161, 322 |
| Tsp45I | GTSAC | 2 cut(s) | 161, 322 |
| TspDTI | ATGAA | 3 cut(s) | 120, 287, 332 |
| TspGWI | ACGGA | 2 cut(s) | 149, 298 |
| TspRI | CASTG | 1 cut(s) | 331 |
| VpaK11BI | GGWCC | 1 cut(s) | 473 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 420 |
| XapI | RAATTY | 1 cut(s) | 272 |
| XmnI | GAANNNNTTC | 1 cut(s) | 249 |
| XspI | CTAG | 3 cut(s) | 15, 182, 450 |