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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 891 |
| AccB1I | GGYRCC | 1 cut(s) | 87 |
| AciI | CCGC | 3 cut(s) | 66, 304, 925 |
| AclWI | GGATC | 2 cut(s) | 29, 42 |
| AcoI | YGGCCR | 1 cut(s) | 45 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcuI | CTGAAG | 3 cut(s) | 522, 582, 858 |
| AfaI | GTAC | 2 cut(s) | 416, 422 |
| AfeI | AGCGCT | 1 cut(s) | 1006 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 84, 842 |
| AgsI | TTSAA | 3 cut(s) | 238, 538, 786 |
| AjiI | CACGTC | 1 cut(s) | 361 |
| AjnI | CCWGG | 1 cut(s) | 354 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 456, 488 |
| AleI | CACNNNNGTG | 1 cut(s) | 528 |
| AluBI | AGCT | 6 cut(s) | 9, 273, 380, 386, 724, 734 |
| AluI | AGCT | 6 cut(s) | 9, 273, 380, 386, 724, 734 |
| Alw21I | GWGCWC | 1 cut(s) | 726 |
| Alw26I | GTCTC | 1 cut(s) | 658 |
| AlwI | GGATC | 2 cut(s) | 29, 42 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 656 |
| Ama87I | CYCGRG | 1 cut(s) | 344 |
| Aor51HI | AGCGCT | 1 cut(s) | 1006 |
| AoxI | GGCC | 2 cut(s) | 45, 318 |
| ApeKI | GCWGC | 1 cut(s) | 404 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 567 |
| AspLEI | GCGC | 1 cut(s) | 1007 |
| AspS9I | GGNCC | 1 cut(s) | 893 |
| AsuC2I | CCSGG | 1 cut(s) | 92 |
| AsuHPI | GGTGA | 3 cut(s) | 65, 80, 158 |
| AsuII | TTCGAA | 1 cut(s) | 97 |
| AvaI | CYCGRG | 1 cut(s) | 344 |
| AvaII | GGWCC | 1 cut(s) | 893 |
| BamHI | GGATCC | 1 cut(s) | 34 |
| BanI | GGYRCC | 1 cut(s) | 87 |
| BanII | GRGCYC | 2 cut(s) | 726, 849 |
| Bbv12I | GWGCWC | 1 cut(s) | 726 |
| BbvI | GCAGC | 1 cut(s) | 416 |
| BccI | CCATC | 2 cut(s) | 504, 658 |
| BciT130I | CCWGG | 1 cut(s) | 356 |
| BciVI | GTATCC | 2 cut(s) | 328, 868 |
| BcnI | CCSGG | 1 cut(s) | 92 |
| BcoDI | GTCTC | 1 cut(s) | 658 |
| BfaI | CTAG | 4 cut(s) | 270, 351, 383, 990 |
| BfmI | CTRYAG | 1 cut(s) | 696 |
| BfoI | RGCGCY | 1 cut(s) | 1008 |
| BfuI | GTATCC | 2 cut(s) | 328, 868 |
| BisI | GCNGC | 1 cut(s) | 405 |
| BlsI | GCNGC | 1 cut(s) | 406 |
| Bme1390I | CCNGG | 2 cut(s) | 92, 356 |
| Bme18I | GGWCC | 1 cut(s) | 893 |
| BmeT110I | CYCGRG | 1 cut(s) | 344 |
| BmgBI | CACGTC | 1 cut(s) | 361 |
| BmgT120I | GGNCC | 1 cut(s) | 893 |
| BmiI | GGNNCC | 3 cut(s) | 36, 89, 848 |
| BmrFI | CCNGG | 2 cut(s) | 92, 356 |
| BmrI | ACTGGG | 2 cut(s) | 298, 644 |
| BmsI | GCATC | 2 cut(s) | 4, 319 |
| BmuI | ACTGGG | 2 cut(s) | 298, 644 |
| BpmI | CTGGAG | 1 cut(s) | 149 |
| Bpu14I | TTCGAA | 1 cut(s) | 97 |
| BpuEI | CTTGAG | 1 cut(s) | 299 |
| BpuMI | CCSGG | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 1 cut(s) | 408 |
| BsaWI | WCCGGW | 1 cut(s) | 77 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 404, 434 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 84, 842 |
| Bse118I | RCCGGY | 1 cut(s) | 47 |
| Bse1I | ACTGG | 3 cut(s) | 249, 293, 650 |
| Bse3DI | GCAATG | 1 cut(s) | 624 |
| BseBI | CCWGG | 1 cut(s) | 356 |
| BseDI | CCNNGG | 1 cut(s) | 408 |
| BseGI | GGATG | 2 cut(s) | 231, 762 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 84, 842 |
| BseMI | GCAATG | 1 cut(s) | 624 |
| BseNI | ACTGG | 3 cut(s) | 249, 293, 650 |
| BseRI | GAGGAG | 1 cut(s) | 19 |
| BseXI | GCAGC | 1 cut(s) | 416 |
| BshFI | GGCC | 2 cut(s) | 47, 320 |
| BshNI | GGYRCC | 1 cut(s) | 87 |
| BsiHKAI | GWGCWC | 1 cut(s) | 726 |
| BsiHKCI | CYCGRG | 1 cut(s) | 344 |
| BsiSI | CCGG | 3 cut(s) | 48, 78, 91 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 84, 842 |
| BsmAI | GTCTC | 1 cut(s) | 658 |
| BsnI | GGCC | 2 cut(s) | 47, 320 |
| BsoBI | CYCGRG | 1 cut(s) | 344 |
| Bsp119I | TTCGAA | 1 cut(s) | 97 |
| Bsp1286I | GDGCHC | 2 cut(s) | 726, 849 |
| Bsp143I | GATC | 2 cut(s) | 34, 705 |
| BspACI | CCGC | 3 cut(s) | 66, 304, 925 |
| BspANI | GGCC | 2 cut(s) | 47, 320 |
| BspHI | TCATGA | 1 cut(s) | 718 |
| BspLI | GGNNCC | 3 cut(s) | 36, 89, 848 |
| BspPI | GGATC | 2 cut(s) | 29, 42 |
| BspT104I | TTCGAA | 1 cut(s) | 97 |
| BspT107I | GGYRCC | 1 cut(s) | 87 |
| BsrDI | GCAATG | 1 cut(s) | 624 |
| BsrFI | RCCGGY | 1 cut(s) | 47 |
| BsrI | ACTGG | 3 cut(s) | 249, 293, 650 |
| BssAI | RCCGGY | 1 cut(s) | 47 |
| BssECI | CCNNGG | 1 cut(s) | 408 |
| BssMI | GATC | 2 cut(s) | 34, 705 |
| BssT1I | CCWWGG | 1 cut(s) | 408 |
| Bst2UI | CCWGG | 1 cut(s) | 356 |
| Bst4CI | ACNGT | 2 cut(s) | 370, 697 |
| Bst6I | CTCTTC | 2 cut(s) | 22, 94 |
| BstBI | TTCGAA | 1 cut(s) | 97 |
| BstC8I | GCNNGC | 1 cut(s) | 308 |
| BstDEI | CTNAG | 4 cut(s) | 10, 672, 912, 1017 |
| BstEII | GGTNACC | 1 cut(s) | 920 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 840 |
| BstF5I | GGATG | 2 cut(s) | 231, 762 |
| BstH2I | RGCGCY | 1 cut(s) | 1008 |
| BstHHI | GCGC | 1 cut(s) | 1007 |
| BstKTI | GATC | 2 cut(s) | 37, 708 |
| BstMAI | GTCTC | 1 cut(s) | 658 |
| BstMBI | GATC | 2 cut(s) | 34, 705 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 392, 401, 853 |
| BstNI | CCWGG | 1 cut(s) | 356 |
| BstPI | GGTNACC | 1 cut(s) | 920 |
| BstSCI | CCNGG | 2 cut(s) | 90, 354 |
| BstSFI | CTRYAG | 1 cut(s) | 696 |
| BstV1I | GCAGC | 1 cut(s) | 416 |
| BstX2I | RGATCY | 1 cut(s) | 34 |
| BstYI | RGATCY | 1 cut(s) | 34 |
| BsuI | GTATCC | 2 cut(s) | 328, 868 |
| BsuRI | GGCC | 2 cut(s) | 47, 320 |
| BtrI | CACGTC | 1 cut(s) | 361 |
| BtsCI | GGATG | 2 cut(s) | 231, 762 |
| Cac8I | GCNNGC | 1 cut(s) | 308 |
| CaiI | CAGNNNCTG | 1 cut(s) | 656 |
| CciI | TCATGA | 1 cut(s) | 718 |
| CfoI | GCGC | 1 cut(s) | 1007 |
| Cfr10I | RCCGGY | 1 cut(s) | 47 |
| Cfr13I | GGNCC | 1 cut(s) | 893 |
| Csp6I | GTAC | 2 cut(s) | 415, 421 |
| CviAII | CATG | 6 cut(s) | 202, 424, 719, 755, 793, 995 |
| CviQI | GTAC | 2 cut(s) | 415, 421 |
| DdeI | CTNAG | 4 cut(s) | 10, 672, 912, 1017 |
| DpnI | GATC | 2 cut(s) | 36, 707 |
| DpnII | GATC | 2 cut(s) | 34, 705 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 891 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 891 |
| EaeI | YGGCCR | 1 cut(s) | 45 |
| Eam1104I | CTCTTC | 2 cut(s) | 22, 94 |
| EarI | CTCTTC | 2 cut(s) | 22, 94 |
| EciI | GGCGGA | 1 cut(s) | 293 |
| Ecl136II | GAGCTC | 1 cut(s) | 724 |
| Eco130I | CCWWGG | 1 cut(s) | 408 |
| Eco24I | GRGCYC | 2 cut(s) | 726, 849 |
| Eco32I | GATATC | 2 cut(s) | 281, 607 |
| Eco47I | GGWCC | 1 cut(s) | 893 |
| Eco47III | AGCGCT | 1 cut(s) | 1006 |
| Eco53kI | GAGCTC | 1 cut(s) | 724 |
| Eco57I | CTGAAG | 3 cut(s) | 522, 582, 858 |
| Eco88I | CYCGRG | 1 cut(s) | 344 |
| Eco91I | GGTNACC | 1 cut(s) | 920 |
| EcoICRI | GAGCTC | 1 cut(s) | 724 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 840 |
| EcoO65I | GGTNACC | 1 cut(s) | 920 |
| EcoRII | CCWGG | 1 cut(s) | 354 |
| EcoRV | GATATC | 2 cut(s) | 281, 607 |
| EcoT14I | CCWWGG | 1 cut(s) | 408 |
| EcoT38I | GRGCYC | 2 cut(s) | 726, 849 |
| ErhI | CCWWGG | 1 cut(s) | 408 |
| FaeI | CATG | 6 cut(s) | 205, 427, 722, 758, 796, 998 |
| FatI | CATG | 6 cut(s) | 201, 423, 718, 754, 792, 994 |
| FauNDI | CATATG | 1 cut(s) | 613 |
| Fnu4HI | GCNGC | 1 cut(s) | 405 |
| FokI | GGATG | 2 cut(s) | 238, 749 |
| FriOI | GRGCYC | 2 cut(s) | 726, 849 |
| Fsp4HI | GCNGC | 1 cut(s) | 405 |
| FspBI | CTAG | 4 cut(s) | 270, 351, 383, 990 |
| GlaI | GCGC | 1 cut(s) | 1006 |
| GluI | GCNGC | 1 cut(s) | 405 |
| GsuI | CTGGAG | 1 cut(s) | 149 |
| HaeII | RGCGCY | 1 cut(s) | 1008 |
| HaeIII | GGCC | 2 cut(s) | 47, 320 |
| HapII | CCGG | 3 cut(s) | 48, 78, 91 |
| HhaI | GCGC | 1 cut(s) | 1007 |
| Hin1II | CATG | 6 cut(s) | 205, 427, 722, 758, 796, 998 |
| Hin6I | GCGC | 1 cut(s) | 1005 |
| HinP1I | GCGC | 1 cut(s) | 1005 |
| HinfI | GANTC | 6 cut(s) | 131, 327, 634, 684, 815, 946 |
| HpaII | CCGG | 3 cut(s) | 48, 78, 91 |
| HphI | GGTGA | 3 cut(s) | 65, 80, 158 |
| Hpy188I | TCNGA | 1 cut(s) | 562 |
| Hpy188III | TCNNGA | 8 cut(s) | 143, 276, 296, 344, 500, 719, 812, 882 |
| HpyAV | CCTTC | 5 cut(s) | 17, 438, 655, 833, 968 |
| HpyCH4III | ACNGT | 2 cut(s) | 370, 697 |
| HpyCH4IV | ACGT | 1 cut(s) | 360 |
| HpyCH4V | TGCA | 4 cut(s) | 17, 617, 659, 831 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 392, 401, 853 |
| HpyF3I | CTNAG | 4 cut(s) | 10, 672, 912, 1017 |
| HpySE526I | ACGT | 1 cut(s) | 360 |
| Hsp92II | CATG | 6 cut(s) | 205, 427, 722, 758, 796, 998 |
| HspAI | GCGC | 1 cut(s) | 1005 |
| Kzo9I | GATC | 2 cut(s) | 34, 705 |
| LmnI | GCTCC | 4 cut(s) | 6, 259, 731, 852 |
| Lsp1109I | GCAGC | 1 cut(s) | 416 |
| LweI | GCATC | 2 cut(s) | 4, 319 |
| MaeI | CTAG | 4 cut(s) | 270, 351, 383, 990 |
| MaeII | ACGT | 1 cut(s) | 360 |
| MaeIII | GTNAC | 4 cut(s) | 230, 485, 691, 920 |
| MalI | GATC | 2 cut(s) | 36, 707 |
| MboI | GATC | 2 cut(s) | 34, 705 |
| MboII | GAAGA | 6 cut(s) | 39, 111, 116, 443, 476, 784 |
| MflI | RGATCY | 1 cut(s) | 34 |
| MhlI | GDGCHC | 2 cut(s) | 726, 849 |
| MluCI | AATT | 6 cut(s) | 212, 339, 590, 676, 781, 820 |
| MlyI | GAGTC | 3 cut(s) | 140, 628, 824 |
| MroXI | GAANNNNTTC | 1 cut(s) | 567 |
| MseI | TTAA | 4 cut(s) | 173, 189, 576, 584 |
| MslI | CAYNNNNRTG | 2 cut(s) | 528, 767 |
| MspI | CCGG | 3 cut(s) | 48, 78, 91 |
| MspR9I | CCNGG | 2 cut(s) | 92, 356 |
| MvaI | CCWGG | 1 cut(s) | 356 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 392, 401, 853 |
| NciI | CCSGG | 1 cut(s) | 92 |
| NdeI | CATATG | 1 cut(s) | 613 |
| NdeII | GATC | 2 cut(s) | 34, 705 |
| NlaIII | CATG | 6 cut(s) | 205, 427, 722, 758, 796, 998 |
| NlaIV | GGNNCC | 3 cut(s) | 36, 89, 848 |
| NmuCI | GTSAC | 1 cut(s) | 485 |
| NspV | TTCGAA | 1 cut(s) | 97 |
| OliI | CACNNNNGTG | 1 cut(s) | 528 |
| PaeR7I | CTCGAG | 1 cut(s) | 344 |
| PagI | TCATGA | 1 cut(s) | 718 |
| PdmI | GAANNNNTTC | 1 cut(s) | 567 |
| PfeI | GAWTC | 3 cut(s) | 327, 684, 946 |
| PkrI | GCNGC | 1 cut(s) | 406 |
| PleI | GAGTC | 3 cut(s) | 139, 628, 823 |
| PpsI | GAGTC | 3 cut(s) | 139, 628, 823 |
| Psp124BI | GAGCTC | 1 cut(s) | 726 |
| Psp6I | CCWGG | 1 cut(s) | 354 |
| PspEI | GGTNACC | 1 cut(s) | 920 |
| PspGI | CCWGG | 1 cut(s) | 354 |
| PspN4I | GGNNCC | 3 cut(s) | 36, 89, 848 |
| PspPI | GGNCC | 1 cut(s) | 893 |
| PstNI | CAGNNNCTG | 1 cut(s) | 656 |
| PsuI | RGATCY | 1 cut(s) | 34 |
| RsaI | GTAC | 2 cut(s) | 416, 422 |
| RsaNI | GTAC | 2 cut(s) | 415, 421 |
| RseI | CAYNNNNRTG | 2 cut(s) | 528, 767 |
| SacI | GAGCTC | 1 cut(s) | 726 |
| SaqAI | TTAA | 4 cut(s) | 173, 189, 576, 584 |
| SatI | GCNGC | 1 cut(s) | 405 |
| Sau3AI | GATC | 2 cut(s) | 34, 705 |
| Sau96I | GGNCC | 1 cut(s) | 893 |
| SchI | GAGTC | 3 cut(s) | 140, 628, 824 |
| ScrFI | CCNGG | 2 cut(s) | 92, 356 |
| SduI | GDGCHC | 2 cut(s) | 726, 849 |
| SfaNI | GCATC | 2 cut(s) | 4, 319 |
| SfcI | CTRYAG | 1 cut(s) | 696 |
| Sfr274I | CTCGAG | 1 cut(s) | 344 |
| SfuI | TTCGAA | 1 cut(s) | 97 |
| SinI | GGWCC | 1 cut(s) | 893 |
| SlaI | CTCGAG | 1 cut(s) | 344 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 528, 767 |
| SmlI | CTYRAG | 2 cut(s) | 314, 344 |
| SmoI | CTYRAG | 2 cut(s) | 314, 344 |
| Sse9I | AATT | 6 cut(s) | 212, 339, 590, 676, 781, 820 |
| SsiI | CCGC | 3 cut(s) | 66, 304, 925 |
| SspMI | CTAG | 4 cut(s) | 270, 351, 383, 990 |
| SstI | GAGCTC | 1 cut(s) | 726 |
| StyD4I | CCNGG | 2 cut(s) | 90, 354 |
| StyI | CCWWGG | 1 cut(s) | 408 |
| TaaI | ACNGT | 2 cut(s) | 370, 697 |
| TaiI | ACGT | 1 cut(s) | 363 |
| TaqI | TCGA | 5 cut(s) | 97, 345, 462, 682, 949 |
| TasI | AATT | 6 cut(s) | 212, 339, 590, 676, 781, 820 |
| TatI | WGTACW | 1 cut(s) | 420 |
| TfiI | GAWTC | 3 cut(s) | 327, 684, 946 |
| Tru1I | TTAA | 4 cut(s) | 173, 189, 576, 584 |
| Tru9I | TTAA | 4 cut(s) | 173, 189, 576, 584 |
| TseFI | GTSAC | 1 cut(s) | 485 |
| TseI | GCWGC | 1 cut(s) | 404 |
| Tsp45I | GTSAC | 1 cut(s) | 485 |
| TspDTI | ATGAA | 5 cut(s) | 218, 440, 707, 752, 809 |
| TspGWI | ACGGA | 1 cut(s) | 958 |
| VpaK11BI | GGWCC | 1 cut(s) | 893 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 840 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 328 |
| XhoI | CTCGAG | 1 cut(s) | 344 |
| XmnI | GAANNNNTTC | 1 cut(s) | 567 |
| XspI | CTAG | 4 cut(s) | 270, 351, 383, 990 |