No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 48 - 150 | 5.6e-06 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 573, 618 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 684 |
| Acc16I | TGCGCA | 1 cut(s) | 945 |
| AccB1I | GGYRCC | 2 cut(s) | 112, 803 |
| AccBSI | CCGCTC | 2 cut(s) | 164, 649 |
| AciI | CCGC | 5 cut(s) | 162, 649, 697, 783, 1040 |
| AclWI | GGATC | 4 cut(s) | 88, 101, 509, 901 |
| AcvI | CACGTG | 1 cut(s) | 740 |
| AcyI | GRCGYC | 3 cut(s) | 181, 804, 823 |
| AfaI | GTAC | 2 cut(s) | 142, 212 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 90, 635, 636, 706 |
| AflIII | ACRYGT | 2 cut(s) | 737, 876 |
| AgsI | TTSAA | 7 cut(s) | 298, 305, 334, 579, 605, 913, 1048 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 401 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 246, 278, 477, 509 |
| AleI | CACNNNNGTG | 1 cut(s) | 831 |
| AluBI | AGCT | 5 cut(s) | 10, 39, 127, 344, 520 |
| AluI | AGCT | 5 cut(s) | 10, 39, 127, 344, 520 |
| Alw21I | GWGCWC | 1 cut(s) | 129 |
| Alw26I | GTCTC | 3 cut(s) | 172, 454, 957 |
| AlwI | GGATC | 4 cut(s) | 88, 101, 509, 901 |
| AoxI | GGCC | 3 cut(s) | 581, 769, 790 |
| ApeKI | GCWGC | 1 cut(s) | 1076 |
| AseI | ATTAAT | 1 cut(s) | 525 |
| AspLEI | GCGC | 4 cut(s) | 250, 642, 806, 946 |
| AspS9I | GGNCC | 1 cut(s) | 686 |
| AsuHPI | GGTGA | 3 cut(s) | 73, 1022, 1024 |
| AvaII | GGWCC | 1 cut(s) | 686 |
| BamHI | GGATCC | 1 cut(s) | 93 |
| BanI | GGYRCC | 2 cut(s) | 112, 803 |
| BanII | GRGCYC | 1 cut(s) | 129 |
| BauI | CACGAG | 1 cut(s) | 505 |
| BbrPI | CACGTG | 1 cut(s) | 740 |
| Bbv12I | GWGCWC | 1 cut(s) | 129 |
| BbvI | GCAGC | 1 cut(s) | 1063 |
| BccI | CCATC | 1 cut(s) | 1001 |
| BceAI | ACGGC | 2 cut(s) | 159, 756 |
| BciVI | GTATCC | 1 cut(s) | 271 |
| BcoDI | GTCTC | 3 cut(s) | 172, 454, 957 |
| BfaI | CTAG | 4 cut(s) | 36, 231, 251, 816 |
| BfmI | CTRYAG | 4 cut(s) | 339, 537, 585, 1077 |
| BfoI | RGCGCY | 1 cut(s) | 807 |
| BfuI | GTATCC | 1 cut(s) | 271 |
| BisI | GCNGC | 2 cut(s) | 783, 1077 |
| BlsI | GCNGC | 2 cut(s) | 784, 1078 |
| Bme18I | GGWCC | 1 cut(s) | 686 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 401 |
| BmgT120I | GGNCC | 1 cut(s) | 686 |
| BmiI | GGNNCC | 5 cut(s) | 95, 114, 653, 781, 805 |
| BmsI | GCATC | 3 cut(s) | 217, 1006, 1063 |
| Bsa29I | ATCGAT | 1 cut(s) | 886 |
| BsaAI | YACGTR | 1 cut(s) | 740 |
| BsaBI | GATNNNNATC | 1 cut(s) | 892 |
| BsaHI | GRCGYC | 3 cut(s) | 181, 804, 823 |
| BsaJI | CCNNGG | 3 cut(s) | 772, 787, 793 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 90, 635, 636, 706 |
| Bse3DI | GCAATG | 2 cut(s) | 923, 928 |
| Bse8I | GATNNNNATC | 1 cut(s) | 892 |
| BseCI | ATCGAT | 1 cut(s) | 886 |
| BseDI | CCNNGG | 3 cut(s) | 772, 787, 793 |
| BseGI | GGATG | 3 cut(s) | 70, 232, 1078 |
| BseJI | GATNNNNATC | 1 cut(s) | 892 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 90, 635, 636, 706 |
| BseMI | GCAATG | 2 cut(s) | 923, 928 |
| BseMII | CTCAG | 1 cut(s) | 54 |
| BseRI | GAGGAG | 2 cut(s) | 780, 792 |
| BseXI | GCAGC | 1 cut(s) | 1063 |
| BshFI | GGCC | 3 cut(s) | 583, 771, 792 |
| BshNI | GGYRCC | 2 cut(s) | 112, 803 |
| BshVI | ATCGAT | 1 cut(s) | 886 |
| BsiHKAI | GWGCWC | 1 cut(s) | 129 |
| BsiWI | CGTACG | 1 cut(s) | 140 |
| BslFI | GGGAC | 2 cut(s) | 681, 834 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 90, 635, 636, 706 |
| BsmAI | GTCTC | 3 cut(s) | 172, 454, 957 |
| BsmBI | CGTCTC | 2 cut(s) | 172, 454 |
| BsmFI | GGGAC | 2 cut(s) | 681, 834 |
| BsnI | GGCC | 3 cut(s) | 583, 771, 792 |
| Bsp1286I | GDGCHC | 1 cut(s) | 129 |
| Bsp143I | GATC | 3 cut(s) | 93, 501, 893 |
| Bsp19I | CCATGG | 1 cut(s) | 793 |
| BspACI | CCGC | 5 cut(s) | 162, 649, 697, 783, 1040 |
| BspANI | GGCC | 3 cut(s) | 583, 771, 792 |
| BspCNI | CTCAG | 1 cut(s) | 53 |
| BspDI | ATCGAT | 1 cut(s) | 886 |
| BspLI | GGNNCC | 5 cut(s) | 95, 114, 653, 781, 805 |
| BspMAI | CTGCAG | 1 cut(s) | 1081 |
| BspPI | GGATC | 4 cut(s) | 88, 101, 509, 901 |
| BspQI | GCTCTTC | 1 cut(s) | 249 |
| BspT107I | GGYRCC | 2 cut(s) | 112, 803 |
| BsrBI | CCGCTC | 2 cut(s) | 164, 649 |
| BsrDI | GCAATG | 2 cut(s) | 923, 928 |
| BssECI | CCNNGG | 3 cut(s) | 772, 787, 793 |
| BssMI | GATC | 3 cut(s) | 93, 501, 893 |
| BssNI | GRCGYC | 3 cut(s) | 181, 804, 823 |
| BssSI | CACGAG | 1 cut(s) | 505 |
| BssT1I | CCWWGG | 2 cut(s) | 787, 793 |
| Bst2BI | CACGAG | 1 cut(s) | 505 |
| Bst6I | CTCTTC | 2 cut(s) | 249, 817 |
| BstACI | GRCGYC | 3 cut(s) | 181, 804, 823 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 842 |
| BstBAI | YACGTR | 1 cut(s) | 740 |
| BstC8I | GCNNGC | 1 cut(s) | 928 |
| BstDEI | CTNAG | 2 cut(s) | 40, 594 |
| BstDSI | CCRYGG | 2 cut(s) | 772, 793 |
| BstF5I | GGATG | 3 cut(s) | 70, 232, 1078 |
| BstH2I | RGCGCY | 1 cut(s) | 807 |
| BstHHI | GCGC | 4 cut(s) | 250, 642, 806, 946 |
| BstKTI | GATC | 3 cut(s) | 96, 504, 896 |
| BstMAI | GTCTC | 3 cut(s) | 172, 454, 957 |
| BstMBI | GATC | 3 cut(s) | 93, 501, 893 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 256, 469, 646, 842, 927, 989 |
| BstNSI | RCATGY | 1 cut(s) | 880 |
| BstSFI | CTRYAG | 4 cut(s) | 339, 537, 585, 1077 |
| BstV1I | GCAGC | 1 cut(s) | 1063 |
| BstX2I | RGATCY | 1 cut(s) | 93 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 794, 800 |
| BstYI | RGATCY | 1 cut(s) | 93 |
| Bsu15I | ATCGAT | 1 cut(s) | 886 |
| BsuI | GTATCC | 1 cut(s) | 271 |
| BsuRI | GGCC | 3 cut(s) | 583, 771, 792 |
| BsuTUI | ATCGAT | 1 cut(s) | 886 |
| BtgI | CCRYGG | 2 cut(s) | 772, 793 |
| BtsCI | GGATG | 3 cut(s) | 70, 232, 1078 |
| Cac8I | GCNNGC | 1 cut(s) | 928 |
| CfoI | GCGC | 4 cut(s) | 250, 642, 806, 946 |
| Cfr13I | GGNCC | 1 cut(s) | 686 |
| ClaI | ATCGAT | 1 cut(s) | 886 |
| CseI | GACGC | 2 cut(s) | 189, 831 |
| Csp6I | GTAC | 2 cut(s) | 141, 211 |
| CviAII | CATG | 7 cut(s) | 187, 214, 548, 750, 794, 877, 977 |
| CviQI | GTAC | 2 cut(s) | 141, 211 |
| DdeI | CTNAG | 2 cut(s) | 40, 594 |
| DinI | GGCGCC | 1 cut(s) | 805 |
| DpnI | GATC | 3 cut(s) | 95, 503, 895 |
| DpnII | GATC | 3 cut(s) | 93, 501, 893 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 684 |
| DriI | GACNNNNNGTC | 1 cut(s) | 401 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 684 |
| Eam1104I | CTCTTC | 2 cut(s) | 249, 817 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 401 |
| EarI | CTCTTC | 2 cut(s) | 249, 817 |
| Ecl136II | GAGCTC | 1 cut(s) | 127 |
| Eco130I | CCWWGG | 2 cut(s) | 787, 793 |
| Eco147I | AGGCCT | 1 cut(s) | 583 |
| Eco24I | GRGCYC | 1 cut(s) | 129 |
| Eco47I | GGWCC | 1 cut(s) | 686 |
| Eco53kI | GAGCTC | 1 cut(s) | 127 |
| Eco72I | CACGTG | 1 cut(s) | 740 |
| EcoICRI | GAGCTC | 1 cut(s) | 127 |
| EcoT14I | CCWWGG | 2 cut(s) | 787, 793 |
| EcoT38I | GRGCYC | 1 cut(s) | 129 |
| EgeI | GGCGCC | 1 cut(s) | 805 |
| EheI | GGCGCC | 1 cut(s) | 805 |
| ErhI | CCWWGG | 2 cut(s) | 787, 793 |
| Esp3I | CGTCTC | 2 cut(s) | 172, 454 |
| FaeI | CATG | 7 cut(s) | 190, 217, 551, 753, 797, 880, 980 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 31, 972, 1004 |
| FaqI | GGGAC | 2 cut(s) | 681, 834 |
| FatI | CATG | 7 cut(s) | 186, 213, 547, 749, 793, 876, 976 |
| Fnu4HI | GCNGC | 2 cut(s) | 783, 1077 |
| FokI | GGATG | 3 cut(s) | 77, 239, 1085 |
| FriOI | GRGCYC | 1 cut(s) | 129 |
| Fsp4HI | GCNGC | 2 cut(s) | 783, 1077 |
| FspBI | CTAG | 4 cut(s) | 36, 231, 251, 816 |
| FspI | TGCGCA | 1 cut(s) | 945 |
| GlaI | GCGC | 4 cut(s) | 249, 641, 805, 945 |
| GluI | GCNGC | 2 cut(s) | 783, 1077 |
| HaeII | RGCGCY | 1 cut(s) | 807 |
| HaeIII | GGCC | 3 cut(s) | 583, 771, 792 |
| HgaI | GACGC | 2 cut(s) | 189, 831 |
| HhaI | GCGC | 4 cut(s) | 250, 642, 806, 946 |
| Hin1I | GRCGYC | 3 cut(s) | 181, 804, 823 |
| Hin1II | CATG | 7 cut(s) | 190, 217, 551, 753, 797, 880, 980 |
| Hin6I | GCGC | 4 cut(s) | 248, 640, 804, 944 |
| HinP1I | GCGC | 4 cut(s) | 248, 640, 804, 944 |
| HindIII | AAGCTT | 1 cut(s) | 8 |
| HinfI | GANTC | 3 cut(s) | 29, 73, 321 |
| HphI | GGTGA | 3 cut(s) | 73, 1022, 1024 |
| Hpy166II | GTNNAC | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 5 cut(s) | 43, 203, 358, 723, 1054 |
| Hpy188III | TCNNGA | 2 cut(s) | 505, 605 |
| Hpy8I | GTNNAC | 1 cut(s) | 395 |
| HpyAV | CCTTC | 3 cut(s) | 451, 704, 722 |
| HpyCH4IV | ACGT | 4 cut(s) | 679, 739, 757, 1023 |
| HpyCH4V | TGCA | 6 cut(s) | 626, 836, 845, 921, 1066, 1079 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 256, 469, 646, 842, 927, 989 |
| HpyF3I | CTNAG | 2 cut(s) | 40, 594 |
| HpySE526I | ACGT | 4 cut(s) | 679, 739, 757, 1023 |
| Hsp92I | GRCGYC | 3 cut(s) | 181, 804, 823 |
| Hsp92II | CATG | 7 cut(s) | 190, 217, 551, 753, 797, 880, 980 |
| HspAI | GCGC | 4 cut(s) | 248, 640, 804, 944 |
| KasI | GGCGCC | 1 cut(s) | 803 |
| Kzo9I | GATC | 3 cut(s) | 93, 501, 893 |
| LguI | GCTCTTC | 1 cut(s) | 249 |
| LmnI | GCTCC | 3 cut(s) | 309, 646, 779 |
| LpnPI | CCDG | 4 cut(s) | 95, 330, 414, 940 |
| Lsp1109I | GCAGC | 1 cut(s) | 1063 |
| LweI | GCATC | 3 cut(s) | 217, 1006, 1063 |
| MaeI | CTAG | 4 cut(s) | 36, 231, 251, 816 |
| MaeII | ACGT | 4 cut(s) | 679, 739, 757, 1023 |
| MaeIII | GTNAC | 2 cut(s) | 58, 403 |
| MalI | GATC | 3 cut(s) | 95, 503, 895 |
| MbiI | CCGCTC | 2 cut(s) | 164, 649 |
| MboI | GATC | 3 cut(s) | 93, 501, 893 |
| MboII | GAAGA | 7 cut(s) | 266, 577, 804, 1007, 1010, 1013, 1016 |
| MflI | RGATCY | 1 cut(s) | 93 |
| MhlI | GDGCHC | 1 cut(s) | 129 |
| Mly113I | GGCGCC | 1 cut(s) | 804 |
| MlyI | GAGTC | 1 cut(s) | 23 |
| MseI | TTAA | 3 cut(s) | 273, 525, 854 |
| MslI | CAYNNNNRTG | 3 cut(s) | 798, 831, 1071 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 256, 469, 646, 842, 927, 989 |
| NarI | GGCGCC | 1 cut(s) | 804 |
| NcoI | CCATGG | 1 cut(s) | 793 |
| NdeII | GATC | 3 cut(s) | 93, 501, 893 |
| NlaIII | CATG | 7 cut(s) | 190, 217, 551, 753, 797, 880, 980 |
| NlaIV | GGNNCC | 5 cut(s) | 95, 114, 653, 781, 805 |
| NmuCI | GTSAC | 2 cut(s) | 58, 403 |
| NsbI | TGCGCA | 1 cut(s) | 945 |
| NspI | RCATGY | 1 cut(s) | 880 |
| OliI | CACNNNNGTG | 1 cut(s) | 831 |
| PceI | AGGCCT | 1 cut(s) | 583 |
| PciI | ACATGT | 1 cut(s) | 876 |
| PciSI | GCTCTTC | 1 cut(s) | 249 |
| PfeI | GAWTC | 2 cut(s) | 73, 321 |
| Pfl23II | CGTACG | 1 cut(s) | 140 |
| PkrI | GCNGC | 2 cut(s) | 784, 1078 |
| PleI | GAGTC | 1 cut(s) | 23 |
| PluTI | GGCGCC | 1 cut(s) | 807 |
| PmaCI | CACGTG | 1 cut(s) | 740 |
| PmlI | CACGTG | 1 cut(s) | 740 |
| PpsI | GAGTC | 1 cut(s) | 23 |
| Ppu21I | YACGTR | 1 cut(s) | 740 |
| PscI | ACATGT | 1 cut(s) | 876 |
| PshBI | ATTAAT | 1 cut(s) | 525 |
| PsiI | TTATAA | 2 cut(s) | 573, 618 |
| Psp124BI | GAGCTC | 1 cut(s) | 129 |
| PspCI | CACGTG | 1 cut(s) | 740 |
| PspLI | CGTACG | 1 cut(s) | 140 |
| PspN4I | GGNNCC | 5 cut(s) | 95, 114, 653, 781, 805 |
| PspPI | GGNCC | 1 cut(s) | 686 |
| PstI | CTGCAG | 1 cut(s) | 1081 |
| PsuI | RGATCY | 1 cut(s) | 93 |
| RsaI | GTAC | 2 cut(s) | 142, 212 |
| RsaNI | GTAC | 2 cut(s) | 141, 211 |
| RseI | CAYNNNNRTG | 3 cut(s) | 798, 831, 1071 |
| SacI | GAGCTC | 1 cut(s) | 129 |
| SapI | GCTCTTC | 1 cut(s) | 249 |
| SaqAI | TTAA | 3 cut(s) | 273, 525, 854 |
| SatI | GCNGC | 2 cut(s) | 783, 1077 |
| Sau3AI | GATC | 3 cut(s) | 93, 501, 893 |
| Sau96I | GGNCC | 1 cut(s) | 686 |
| SchI | GAGTC | 1 cut(s) | 23 |
| SduI | GDGCHC | 1 cut(s) | 129 |
| SfaNI | GCATC | 3 cut(s) | 217, 1006, 1063 |
| SfcI | CTRYAG | 4 cut(s) | 339, 537, 585, 1077 |
| SfoI | GGCGCC | 1 cut(s) | 805 |
| SinI | GGWCC | 1 cut(s) | 686 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 798, 831, 1071 |
| SseBI | AGGCCT | 1 cut(s) | 583 |
| SsiI | CCGC | 5 cut(s) | 162, 649, 697, 783, 1040 |
| SspDI | GGCGCC | 1 cut(s) | 803 |
| SspI | AATATT | 1 cut(s) | 493 |
| SspMI | CTAG | 4 cut(s) | 36, 231, 251, 816 |
| SstI | GAGCTC | 1 cut(s) | 129 |
| StuI | AGGCCT | 1 cut(s) | 583 |
| StyI | CCWWGG | 2 cut(s) | 787, 793 |
| TaiI | ACGT | 4 cut(s) | 682, 742, 760, 1026 |
| TaqI | TCGA | 2 cut(s) | 478, 886 |
| TatI | WGTACW | 1 cut(s) | 210 |
| TauI | GCSGC | 1 cut(s) | 785 |
| TfiI | GAWTC | 2 cut(s) | 73, 321 |
| Tru1I | TTAA | 3 cut(s) | 273, 525, 854 |
| Tru9I | TTAA | 3 cut(s) | 273, 525, 854 |
| TseFI | GTSAC | 2 cut(s) | 58, 403 |
| TseI | GCWGC | 1 cut(s) | 1076 |
| Tsp45I | GTSAC | 2 cut(s) | 58, 403 |
| TspDTI | ATGAA | 3 cut(s) | 503, 741, 993 |
| TspGWI | ACGGA | 3 cut(s) | 77, 91, 514 |
| VpaK11BI | GGWCC | 1 cut(s) | 686 |
| VspI | ATTAAT | 1 cut(s) | 525 |
| XceI | RCATGY | 1 cut(s) | 880 |
| XspI | CTAG | 4 cut(s) | 36, 231, 251, 816 |