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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 413, 429 |
| AccBSI | CCGCTC | 1 cut(s) | 108 |
| AciI | CCGC | 1 cut(s) | 106 |
| AclWI | GGATC | 1 cut(s) | 296 |
| AcsI | RAATTY | 1 cut(s) | 371 |
| AcyI | GRCGYC | 2 cut(s) | 414, 430 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 425 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 2 cut(s) | 307, 317 |
| AluI | AGCT | 2 cut(s) | 307, 317 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 1 cut(s) | 296 |
| ApoI | RAATTY | 1 cut(s) | 371 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 390 |
| AspLEI | GCGC | 2 cut(s) | 416, 432 |
| AspS9I | GGNCC | 1 cut(s) | 476 |
| AsuII | TTCGAA | 1 cut(s) | 368 |
| AvaII | GGWCC | 1 cut(s) | 476 |
| BanI | GGYRCC | 2 cut(s) | 413, 429 |
| BbsI | GAAGAC | 2 cut(s) | 18, 48 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 2 cut(s) | 417, 433 |
| Bme18I | GGWCC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 476 |
| BmiI | GGNNCC | 2 cut(s) | 415, 431 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 2 cut(s) | 18, 48 |
| Bpu14I | TTCGAA | 1 cut(s) | 368 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 2 cut(s) | 414, 430 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseGI | GGATG | 2 cut(s) | 345, 473 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BsgI | GTGCAG | 1 cut(s) | 225 |
| BshNI | GGYRCC | 2 cut(s) | 413, 429 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp119I | TTCGAA | 1 cut(s) | 368 |
| Bsp143I | GATC | 2 cut(s) | 189, 288 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspCNI | CTCAG | 1 cut(s) | 155 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspLI | GGNNCC | 2 cut(s) | 415, 431 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BspT104I | TTCGAA | 1 cut(s) | 368 |
| BspT107I | GGYRCC | 2 cut(s) | 413, 429 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrBI | CCGCTC | 1 cut(s) | 108 |
| BssMI | GATC | 2 cut(s) | 189, 288 |
| BssNI | GRCGYC | 2 cut(s) | 414, 430 |
| Bst4CI | ACNGT | 1 cut(s) | 280 |
| BstACI | GRCGYC | 2 cut(s) | 414, 430 |
| BstBI | TTCGAA | 1 cut(s) | 368 |
| BstDEI | CTNAG | 4 cut(s) | 142, 255, 420, 452 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 2 cut(s) | 345, 473 |
| BstH2I | RGCGCY | 2 cut(s) | 417, 433 |
| BstHHI | GCGC | 2 cut(s) | 416, 432 |
| BstKTI | GATC | 2 cut(s) | 192, 291 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 2 cut(s) | 189, 288 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 436 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 48 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 2 cut(s) | 345, 473 |
| BtsIMutI | CAGTG | 1 cut(s) | 242 |
| CfoI | GCGC | 2 cut(s) | 416, 432 |
| Cfr13I | GGNCC | 1 cut(s) | 476 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 391, 426 |
| CviAII | CATG | 1 cut(s) | 338 |
| CviJI | RGCY | 5 cut(s) | 25, 102, 149, 307, 317 |
| CviKI_1 | RGCY | 5 cut(s) | 25, 102, 149, 307, 317 |
| DdeI | CTNAG | 4 cut(s) | 142, 255, 420, 452 |
| DinI | GGCGCC | 2 cut(s) | 415, 431 |
| DpnI | GATC | 2 cut(s) | 191, 290 |
| DpnII | GATC | 2 cut(s) | 189, 288 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 476 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EgeI | GGCGCC | 2 cut(s) | 415, 431 |
| EheI | GGCGCC | 2 cut(s) | 415, 431 |
| FaeI | CATG | 1 cut(s) | 341 |
| FatI | CATG | 1 cut(s) | 337 |
| FokI | GGATG | 2 cut(s) | 332, 480 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 2 cut(s) | 415, 431 |
| HaeII | RGCGCY | 2 cut(s) | 417, 433 |
| HhaI | GCGC | 2 cut(s) | 416, 432 |
| Hin1I | GRCGYC | 2 cut(s) | 414, 430 |
| Hin1II | CATG | 1 cut(s) | 341 |
| Hin6I | GCGC | 2 cut(s) | 414, 430 |
| HinP1I | GCGC | 2 cut(s) | 414, 430 |
| HindIII | AAGCTT | 1 cut(s) | 305 |
| HinfI | GANTC | 3 cut(s) | 65, 217, 267 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 396 |
| Hpy188III | TCNNGA | 2 cut(s) | 77, 131 |
| HpyAV | CCTTC | 2 cut(s) | 15, 238 |
| HpyCH4III | ACNGT | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 2 cut(s) | 156, 242 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 436 |
| HpyF3I | CTNAG | 4 cut(s) | 142, 255, 420, 452 |
| Hsp92I | GRCGYC | 2 cut(s) | 414, 430 |
| Hsp92II | CATG | 1 cut(s) | 341 |
| HspAI | GCGC | 2 cut(s) | 414, 430 |
| KasI | GGCGCC | 2 cut(s) | 413, 429 |
| Kzo9I | GATC | 2 cut(s) | 189, 288 |
| LmnI | GCTCC | 2 cut(s) | 113, 314 |
| LpnPI | CCDG | 6 cut(s) | 31, 83, 90, 124, 246, 459 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeIII | GTNAC | 2 cut(s) | 62, 274 |
| MalI | GATC | 2 cut(s) | 191, 290 |
| MbiI | CCGCTC | 1 cut(s) | 108 |
| MboI | GATC | 2 cut(s) | 189, 288 |
| MboII | GAAGA | 5 cut(s) | 20, 23, 53, 226, 367 |
| MluCI | AATT | 4 cut(s) | 173, 364, 371, 403 |
| Mly113I | GGCGCC | 2 cut(s) | 414, 430 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MnlI | CCTC | 2 cut(s) | 113, 419 |
| MroXI | GAANNNNTTC | 1 cut(s) | 390 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 436 |
| NarI | GGCGCC | 2 cut(s) | 414, 430 |
| NdeII | GATC | 2 cut(s) | 189, 288 |
| NlaIII | CATG | 1 cut(s) | 341 |
| NlaIV | GGNNCC | 2 cut(s) | 415, 431 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| NspV | TTCGAA | 1 cut(s) | 368 |
| PdmI | GAANNNNTTC | 1 cut(s) | 390 |
| PfeI | GAWTC | 2 cut(s) | 217, 267 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PluTI | GGCGCC | 2 cut(s) | 417, 433 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| PspN4I | GGNNCC | 2 cut(s) | 415, 431 |
| PspPI | GGNCC | 1 cut(s) | 476 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 2 cut(s) | 189, 288 |
| Sau96I | GGNCC | 1 cut(s) | 476 |
| SchI | GAGTC | 1 cut(s) | 59 |
| SetI | ASST | 5 cut(s) | 84, 230, 299, 309, 319 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 2 cut(s) | 415, 431 |
| SfuI | TTCGAA | 1 cut(s) | 368 |
| SinI | GGWCC | 1 cut(s) | 476 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| Sse9I | AATT | 4 cut(s) | 173, 364, 371, 403 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspDI | GGCGCC | 2 cut(s) | 413, 429 |
| SspMI | CTAG | 1 cut(s) | 83 |
| TaaI | ACNGT | 1 cut(s) | 280 |
| TaqI | TCGA | 4 cut(s) | 39, 265, 270, 368 |
| TasI | AATT | 4 cut(s) | 173, 364, 371, 403 |
| TfiI | GAWTC | 2 cut(s) | 217, 267 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 1 cut(s) | 249 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| TspGWI | ACGGA | 2 cut(s) | 50, 301 |
| TspRI | CASTG | 1 cut(s) | 249 |
| VpaK11BI | GGWCC | 1 cut(s) | 476 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XapI | RAATTY | 1 cut(s) | 371 |
| XmnI | GAANNNNTTC | 1 cut(s) | 390 |
| XspI | CTAG | 1 cut(s) | 83 |