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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccII | CGCG | 2 cut(s) | 102, 453 |
| AciI | CCGC | 1 cut(s) | 145 |
| AclI | AACGTT | 2 cut(s) | 96, 761 |
| AclWI | GGATC | 1 cut(s) | 726 |
| AcoI | YGGCCR | 1 cut(s) | 220 |
| AfaI | GTAC | 1 cut(s) | 747 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| AflIII | ACRYGT | 1 cut(s) | 583 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AluBI | AGCT | 4 cut(s) | 64, 188, 346, 368 |
| AluI | AGCT | 4 cut(s) | 64, 188, 346, 368 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 565 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| Alw44I | GTGCAC | 1 cut(s) | 561 |
| AlwI | GGATC | 1 cut(s) | 726 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApaLI | GTGCAC | 1 cut(s) | 561 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 25, 455 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 1 cut(s) | 637 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| BaeGI | GKGCMC | 1 cut(s) | 565 |
| BalI | TGGCCA | 1 cut(s) | 222 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 565 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 126, 202 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 1 cut(s) | 408 |
| BfmI | CTRYAG | 2 cut(s) | 445, 618 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 5 cut(s) | 355, 421, 569, 609, 686 |
| BmsI | GCATC | 5 cut(s) | 10, 336, 618, 679, 760 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 455 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 3 cut(s) | 245, 717, 833 |
| BsaJI | CCNNGG | 3 cut(s) | 414, 459, 571 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| Bse8I | GATNNNNATC | 3 cut(s) | 245, 717, 833 |
| BseDI | CCNNGG | 3 cut(s) | 414, 459, 571 |
| BseGI | GGATG | 1 cut(s) | 751 |
| BseJI | GATNNNNATC | 3 cut(s) | 245, 717, 833 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BseSI | GKGCMC | 1 cut(s) | 565 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| Bsh1236I | CGCG | 2 cut(s) | 102, 453 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 565 |
| BsiSI | CCGG | 1 cut(s) | 614 |
| BslFI | GGGAC | 1 cut(s) | 509 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 509 |
| BsnI | GGCC | 1 cut(s) | 222 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 565 |
| Bsp143I | GATC | 4 cut(s) | 246, 676, 718, 834 |
| Bsp68I | TCGCGA | 1 cut(s) | 102 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspFNI | CGCG | 2 cut(s) | 102, 453 |
| BspHI | TCATGA | 2 cut(s) | 340, 786 |
| BspLI | GGNNCC | 5 cut(s) | 355, 421, 569, 609, 686 |
| BspPI | GGATC | 1 cut(s) | 726 |
| BspQI | GCTCTTC | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BssECI | CCNNGG | 3 cut(s) | 414, 459, 571 |
| BssMI | GATC | 4 cut(s) | 246, 676, 718, 834 |
| BssT1I | CCWWGG | 1 cut(s) | 459 |
| Bst4CI | ACNGT | 1 cut(s) | 572 |
| Bst6I | CTCTTC | 2 cut(s) | 195, 584 |
| BstC8I | GCNNGC | 1 cut(s) | 561 |
| BstDEI | CTNAG | 1 cut(s) | 486 |
| BstDSI | CCRYGG | 2 cut(s) | 414, 571 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 44, 533 |
| BstF5I | GGATG | 1 cut(s) | 751 |
| BstFNI | CGCG | 2 cut(s) | 102, 453 |
| BstHHI | GCGC | 2 cut(s) | 25, 455 |
| BstKTI | GATC | 4 cut(s) | 249, 679, 721, 837 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 4 cut(s) | 246, 676, 718, 834 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 99, 799 |
| BstNSI | RCATGY | 1 cut(s) | 587 |
| BstSFI | CTRYAG | 2 cut(s) | 445, 618 |
| BstSLI | GKGCMC | 1 cut(s) | 565 |
| BstUI | CGCG | 2 cut(s) | 102, 453 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| BtgI | CCRYGG | 2 cut(s) | 414, 571 |
| BtgZI | GCGATG | 1 cut(s) | 145 |
| BtsCI | GGATG | 1 cut(s) | 751 |
| BtuMI | TCGCGA | 1 cut(s) | 102 |
| Cac8I | GCNNGC | 1 cut(s) | 561 |
| CciI | TCATGA | 2 cut(s) | 340, 786 |
| CfoI | GCGC | 2 cut(s) | 25, 455 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| CseI | GACGC | 2 cut(s) | 333, 477 |
| Csp6I | GTAC | 1 cut(s) | 746 |
| CviAII | CATG | 6 cut(s) | 13, 341, 358, 584, 787, 810 |
| CviQI | GTAC | 1 cut(s) | 746 |
| DdeI | CTNAG | 1 cut(s) | 486 |
| DpnI | GATC | 4 cut(s) | 248, 678, 720, 836 |
| DpnII | GATC | 4 cut(s) | 246, 676, 718, 834 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| EaeI | YGGCCR | 1 cut(s) | 220 |
| Eam1104I | CTCTTC | 2 cut(s) | 195, 584 |
| EarI | CTCTTC | 2 cut(s) | 195, 584 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 1 cut(s) | 459 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 44, 533 |
| EcoT14I | CCWWGG | 1 cut(s) | 459 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| ErhI | CCWWGG | 1 cut(s) | 459 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 6 cut(s) | 16, 344, 361, 587, 790, 813 |
| FaqI | GGGAC | 1 cut(s) | 509 |
| FatI | CATG | 6 cut(s) | 12, 340, 357, 583, 786, 809 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| FokI | GGATG | 1 cut(s) | 738 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| FspBI | CTAG | 1 cut(s) | 408 |
| GlaI | GCGC | 2 cut(s) | 24, 454 |
| GluI | GCNGC | 1 cut(s) | 83 |
| GsuI | CTGGAG | 1 cut(s) | 455 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HapII | CCGG | 1 cut(s) | 614 |
| HgaI | GACGC | 2 cut(s) | 333, 477 |
| HhaI | GCGC | 2 cut(s) | 25, 455 |
| Hin1II | CATG | 6 cut(s) | 16, 344, 361, 587, 790, 813 |
| Hin6I | GCGC | 2 cut(s) | 23, 453 |
| HinP1I | GCGC | 2 cut(s) | 23, 453 |
| HincII | GTYRAC | 1 cut(s) | 581 |
| HindII | GTYRAC | 1 cut(s) | 581 |
| HinfI | GANTC | 4 cut(s) | 104, 256, 289, 437 |
| HpaII | CCGG | 1 cut(s) | 614 |
| HphI | GGTGA | 1 cut(s) | 637 |
| Hpy166II | GTNNAC | 4 cut(s) | 563, 581, 727, 746 |
| Hpy188I | TCNGA | 1 cut(s) | 306 |
| Hpy188III | TCNNGA | 8 cut(s) | 101, 116, 250, 341, 434, 504, 674, 787 |
| Hpy8I | GTNNAC | 4 cut(s) | 563, 581, 727, 746 |
| HpyAV | CCTTC | 2 cut(s) | 277, 533 |
| HpyCH4III | ACNGT | 1 cut(s) | 572 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 508, 761 |
| HpyCH4V | TGCA | 3 cut(s) | 563, 751, 766 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 99, 799 |
| HpyF3I | CTNAG | 1 cut(s) | 486 |
| HpySE526I | ACGT | 3 cut(s) | 96, 508, 761 |
| Hsp92II | CATG | 6 cut(s) | 16, 344, 361, 587, 790, 813 |
| HspAI | GCGC | 2 cut(s) | 23, 453 |
| Kzo9I | GATC | 4 cut(s) | 246, 676, 718, 834 |
| LguI | GCTCTTC | 1 cut(s) | 195 |
| LmnI | GCTCC | 4 cut(s) | 30, 475, 607, 684 |
| LpnPI | CCDG | 9 cut(s) | 122, 129, 306, 419, 489, 498, 627, 701, 769 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 5 cut(s) | 10, 336, 618, 679, 760 |
| MaeI | CTAG | 1 cut(s) | 408 |
| MaeII | ACGT | 3 cut(s) | 96, 508, 761 |
| MalI | GATC | 4 cut(s) | 248, 678, 720, 836 |
| MboI | GATC | 4 cut(s) | 246, 676, 718, 834 |
| MboII | GAAGA | 6 cut(s) | 62, 182, 265, 406, 601, 832 |
| MhlI | GDGCHC | 2 cut(s) | 348, 565 |
| MlsI | TGGCCA | 1 cut(s) | 222 |
| MluCI | AATT | 3 cut(s) | 298, 499, 804 |
| MluNI | TGGCCA | 1 cut(s) | 222 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 446 |
| Mox20I | TGGCCA | 1 cut(s) | 222 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 222 |
| MseI | TTAA | 1 cut(s) | 531 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 389, 698 |
| Msp20I | TGGCCA | 1 cut(s) | 222 |
| MspI | CCGG | 1 cut(s) | 614 |
| MvnI | CGCG | 2 cut(s) | 102, 453 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 99, 799 |
| NdeII | GATC | 4 cut(s) | 246, 676, 718, 834 |
| NlaIII | CATG | 6 cut(s) | 16, 344, 361, 587, 790, 813 |
| NlaIV | GGNNCC | 5 cut(s) | 355, 421, 569, 609, 686 |
| NruI | TCGCGA | 1 cut(s) | 102 |
| NspI | RCATGY | 1 cut(s) | 587 |
| PagI | TCATGA | 2 cut(s) | 340, 786 |
| PciI | ACATGT | 1 cut(s) | 583 |
| PciSI | GCTCTTC | 1 cut(s) | 195 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 289 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PscI | ACATGT | 1 cut(s) | 583 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| Psp1406I | AACGTT | 2 cut(s) | 96, 761 |
| PspN4I | GGNNCC | 5 cut(s) | 355, 421, 569, 609, 686 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| RruI | TCGCGA | 1 cut(s) | 102 |
| RsaI | GTAC | 1 cut(s) | 747 |
| RsaNI | GTAC | 1 cut(s) | 746 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 389, 698 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SapI | GCTCTTC | 1 cut(s) | 195 |
| SaqAI | TTAA | 1 cut(s) | 531 |
| SatI | GCNGC | 1 cut(s) | 83 |
| Sau3AI | GATC | 4 cut(s) | 246, 676, 718, 834 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 446 |
| SduI | GDGCHC | 2 cut(s) | 348, 565 |
| SfaNI | GCATC | 5 cut(s) | 10, 336, 618, 679, 760 |
| SfcI | CTRYAG | 2 cut(s) | 445, 618 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 389, 698 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 298, 499, 804 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspMI | CTAG | 1 cut(s) | 408 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StyI | CCWWGG | 1 cut(s) | 459 |
| TaaI | ACNGT | 1 cut(s) | 572 |
| TaiI | ACGT | 3 cut(s) | 99, 511, 764 |
| TaqI | TCGA | 3 cut(s) | 249, 675, 711 |
| TasI | AATT | 3 cut(s) | 298, 499, 804 |
| TatI | WGTACW | 1 cut(s) | 745 |
| TfiI | GAWTC | 1 cut(s) | 289 |
| Tru1I | TTAA | 1 cut(s) | 531 |
| Tru9I | TTAA | 1 cut(s) | 531 |
| TseI | GCWGC | 1 cut(s) | 82 |
| TspDTI | ATGAA | 4 cut(s) | 29, 329, 374, 803 |
| TspGWI | ACGGA | 1 cut(s) | 580 |
| VneI | GTGCAC | 1 cut(s) | 561 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 44, 533 |
| XceI | RCATGY | 1 cut(s) | 587 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 63, 430 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 408 |