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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 297 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 685 |
| AccBSI | CCGCTC | 1 cut(s) | 787 |
| AciI | CCGC | 2 cut(s) | 140, 785 |
| AclWI | GGATC | 2 cut(s) | 323, 535 |
| AcsI | RAATTY | 2 cut(s) | 7, 849 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 312, 547, 548, 685 |
| AflIII | ACRYGT | 1 cut(s) | 718 |
| AgsI | TTSAA | 3 cut(s) | 196, 371, 709 |
| AluBI | AGCT | 4 cut(s) | 152, 232, 493, 701 |
| AluI | AGCT | 4 cut(s) | 152, 232, 493, 701 |
| Alw21I | GWGCWC | 3 cut(s) | 282, 292, 495 |
| Alw26I | GTCTC | 3 cut(s) | 519, 719, 799 |
| AlwI | GGATC | 2 cut(s) | 323, 535 |
| AoxI | GGCC | 6 cut(s) | 66, 107, 357, 550, 646, 687 |
| ApaI | GGGCCC | 2 cut(s) | 70, 554 |
| ApeKI | GCWGC | 1 cut(s) | 415 |
| ApoI | RAATTY | 2 cut(s) | 7, 849 |
| AspLEI | GCGC | 1 cut(s) | 174 |
| AspS9I | GGNCC | 6 cut(s) | 66, 67, 107, 550, 551, 688 |
| AsuHPI | GGTGA | 3 cut(s) | 254, 310, 430 |
| BaeGI | GKGCMC | 2 cut(s) | 70, 554 |
| BanII | GRGCYC | 4 cut(s) | 70, 495, 554, 658 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 188, 220 |
| BbsI | GAAGAC | 3 cut(s) | 458, 621, 681 |
| Bbv12I | GWGCWC | 3 cut(s) | 282, 292, 495 |
| BbvI | GCAGC | 1 cut(s) | 427 |
| BccI | CCATC | 3 cut(s) | 186, 192, 516 |
| BclI | TGATCA | 1 cut(s) | 594 |
| BcoDI | GTCTC | 3 cut(s) | 519, 719, 799 |
| BfaI | CTAG | 2 cut(s) | 285, 865 |
| BfmI | CTRYAG | 2 cut(s) | 522, 771 |
| BisI | GCNGC | 1 cut(s) | 416 |
| BlpI | GCTNAGC | 1 cut(s) | 477 |
| BlsI | GCNGC | 1 cut(s) | 417 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| BmgT120I | GGNCC | 6 cut(s) | 66, 67, 107, 550, 551, 688 |
| BmiI | GGNNCC | 2 cut(s) | 68, 552 |
| BmsI | GCATC | 2 cut(s) | 64, 354 |
| BpiI | GAAGAC | 3 cut(s) | 458, 621, 681 |
| Bpu10I | CCTNAGC | 1 cut(s) | 153 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 477 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 3 cut(s) | 103, 554, 752 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 333, 363 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 312, 547, 548, 685 |
| Bse1I | ACTGG | 1 cut(s) | 840 |
| BseDI | CCNNGG | 3 cut(s) | 103, 554, 752 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 312, 547, 548, 685 |
| BseMII | CTCAG | 5 cut(s) | 144, 368, 468, 756, 810 |
| BseNI | ACTGG | 1 cut(s) | 840 |
| BseSI | GKGCMC | 2 cut(s) | 70, 554 |
| BseXI | GCAGC | 1 cut(s) | 427 |
| BsgI | GTGCAG | 1 cut(s) | 690 |
| BshFI | GGCC | 6 cut(s) | 68, 109, 359, 552, 648, 689 |
| BsiHKAI | GWGCWC | 3 cut(s) | 282, 292, 495 |
| BslFI | GGGAC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 312, 547, 548, 685 |
| BsmAI | GTCTC | 3 cut(s) | 519, 719, 799 |
| BsmFI | GGGAC | 1 cut(s) | 121 |
| BsnI | GGCC | 6 cut(s) | 68, 109, 359, 552, 648, 689 |
| Bsp120I | GGGCCC | 2 cut(s) | 66, 550 |
| Bsp1286I | GDGCHC | 6 cut(s) | 70, 282, 292, 495, 554, 658 |
| Bsp143I | GATC | 4 cut(s) | 315, 451, 527, 594 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 477 |
| BspACI | CCGC | 2 cut(s) | 140, 785 |
| BspANI | GGCC | 6 cut(s) | 68, 109, 359, 552, 648, 689 |
| BspCNI | CTCAG | 5 cut(s) | 143, 367, 469, 757, 809 |
| BspLI | GGNNCC | 2 cut(s) | 68, 552 |
| BspPI | GGATC | 2 cut(s) | 323, 535 |
| BsrBI | CCGCTC | 1 cut(s) | 787 |
| BsrI | ACTGG | 1 cut(s) | 840 |
| BssECI | CCNNGG | 3 cut(s) | 103, 554, 752 |
| BssMI | GATC | 4 cut(s) | 315, 451, 527, 594 |
| BssT1I | CCWWGG | 3 cut(s) | 103, 554, 752 |
| Bst4CI | ACNGT | 4 cut(s) | 214, 274, 349, 620 |
| BstC8I | GCNNGC | 1 cut(s) | 658 |
| BstDEI | CTNAG | 7 cut(s) | 130, 153, 354, 477, 629, 765, 796 |
| BstHHI | GCGC | 1 cut(s) | 174 |
| BstKTI | GATC | 4 cut(s) | 318, 454, 530, 597 |
| BstMAI | GTCTC | 3 cut(s) | 519, 719, 799 |
| BstMBI | GATC | 4 cut(s) | 315, 451, 527, 594 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstNSI | RCATGY | 1 cut(s) | 722 |
| BstSFI | CTRYAG | 2 cut(s) | 522, 771 |
| BstSLI | GKGCMC | 2 cut(s) | 70, 554 |
| BstV1I | GCAGC | 1 cut(s) | 427 |
| BstV2I | GAAGAC | 3 cut(s) | 458, 621, 681 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 104 |
| BsuRI | GGCC | 6 cut(s) | 68, 109, 359, 552, 648, 689 |
| BtsIMutI | CAGTG | 1 cut(s) | 847 |
| Cac8I | GCNNGC | 1 cut(s) | 658 |
| CfoI | GCGC | 1 cut(s) | 174 |
| Cfr13I | GGNCC | 6 cut(s) | 66, 67, 107, 550, 551, 688 |
| CseI | GACGC | 1 cut(s) | 123 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 5 cut(s) | 307, 361, 392, 403, 719 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 7 cut(s) | 130, 153, 354, 477, 629, 765, 796 |
| DpnI | GATC | 4 cut(s) | 317, 453, 529, 596 |
| DpnII | GATC | 4 cut(s) | 315, 451, 527, 594 |
| Ecl136II | GAGCTC | 1 cut(s) | 493 |
| Eco130I | CCWWGG | 3 cut(s) | 103, 554, 752 |
| Eco24I | GRGCYC | 4 cut(s) | 70, 495, 554, 658 |
| Eco53kI | GAGCTC | 1 cut(s) | 493 |
| EcoICRI | GAGCTC | 1 cut(s) | 493 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 849 |
| EcoT14I | CCWWGG | 3 cut(s) | 103, 554, 752 |
| EcoT38I | GRGCYC | 4 cut(s) | 70, 495, 554, 658 |
| ErhI | CCWWGG | 3 cut(s) | 103, 554, 752 |
| FaeI | CATG | 5 cut(s) | 310, 364, 395, 406, 722 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 210, 242 |
| FaqI | GGGAC | 1 cut(s) | 121 |
| FatI | CATG | 5 cut(s) | 306, 360, 391, 402, 718 |
| FauI | CCCGC | 1 cut(s) | 147 |
| FbaI | TGATCA | 1 cut(s) | 594 |
| Fnu4HI | GCNGC | 1 cut(s) | 416 |
| FriOI | GRGCYC | 4 cut(s) | 70, 495, 554, 658 |
| Fsp4HI | GCNGC | 1 cut(s) | 416 |
| FspBI | CTAG | 2 cut(s) | 285, 865 |
| GlaI | GCGC | 1 cut(s) | 173 |
| GluI | GCNGC | 1 cut(s) | 416 |
| HaeIII | GGCC | 6 cut(s) | 68, 109, 359, 552, 648, 689 |
| HgaI | GACGC | 1 cut(s) | 123 |
| HhaI | GCGC | 1 cut(s) | 174 |
| Hin1II | CATG | 5 cut(s) | 310, 364, 395, 406, 722 |
| Hin6I | GCGC | 1 cut(s) | 172 |
| HinP1I | GCGC | 1 cut(s) | 172 |
| HindIII | AAGCTT | 1 cut(s) | 699 |
| HinfI | GANTC | 4 cut(s) | 82, 331, 435, 758 |
| HphI | GGTGA | 3 cut(s) | 254, 310, 430 |
| Hpy188I | TCNGA | 5 cut(s) | 451, 591, 748, 766, 799 |
| Hpy188III | TCNNGA | 3 cut(s) | 89, 313, 854 |
| HpyAV | CCTTC | 3 cut(s) | 116, 190, 388 |
| HpyCH4III | ACNGT | 4 cut(s) | 214, 274, 349, 620 |
| HpyCH4V | TGCA | 2 cut(s) | 77, 671 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| HpyF3I | CTNAG | 7 cut(s) | 130, 153, 354, 477, 629, 765, 796 |
| Hsp92II | CATG | 5 cut(s) | 310, 364, 395, 406, 722 |
| HspAI | GCGC | 1 cut(s) | 172 |
| Ksp22I | TGATCA | 1 cut(s) | 594 |
| Kzo9I | GATC | 4 cut(s) | 315, 451, 527, 594 |
| LmnI | GCTCC | 1 cut(s) | 285 |
| Lsp1109I | GCAGC | 1 cut(s) | 427 |
| LweI | GCATC | 2 cut(s) | 64, 354 |
| MaeI | CTAG | 2 cut(s) | 285, 865 |
| MaeIII | GTNAC | 1 cut(s) | 349 |
| MalI | GATC | 4 cut(s) | 317, 453, 529, 596 |
| MbiI | CCGCTC | 1 cut(s) | 787 |
| MboI | GATC | 4 cut(s) | 315, 451, 527, 594 |
| MboII | GAAGA | 4 cut(s) | 458, 514, 626, 686 |
| MhlI | GDGCHC | 6 cut(s) | 70, 282, 292, 495, 554, 658 |
| MluCI | AATT | 6 cut(s) | 7, 17, 298, 545, 823, 849 |
| MmeI | TCCRAC | 1 cut(s) | 423 |
| MnlI | CCTC | 4 cut(s) | 331, 406, 425, 612 |
| MseI | TTAA | 2 cut(s) | 209, 497 |
| MslI | CAYNNNNRTG | 1 cut(s) | 609 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NdeII | GATC | 4 cut(s) | 315, 451, 527, 594 |
| NlaIII | CATG | 5 cut(s) | 310, 364, 395, 406, 722 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 552 |
| NspI | RCATGY | 1 cut(s) | 722 |
| PciI | ACATGT | 1 cut(s) | 718 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 664 |
| PfeI | GAWTC | 4 cut(s) | 82, 331, 435, 758 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 685 |
| PkrI | GCNGC | 1 cut(s) | 417 |
| PscI | ACATGT | 1 cut(s) | 718 |
| PsiI | TTATAA | 1 cut(s) | 297 |
| Psp124BI | GAGCTC | 1 cut(s) | 495 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 552 |
| PspOMI | GGGCCC | 2 cut(s) | 66, 550 |
| PspPI | GGNCC | 6 cut(s) | 66, 67, 107, 550, 551, 688 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| RseI | CAYNNNNRTG | 1 cut(s) | 609 |
| SacI | GAGCTC | 1 cut(s) | 495 |
| SaqAI | TTAA | 2 cut(s) | 209, 497 |
| SatI | GCNGC | 1 cut(s) | 416 |
| Sau3AI | GATC | 4 cut(s) | 315, 451, 527, 594 |
| Sau96I | GGNCC | 6 cut(s) | 66, 67, 107, 550, 551, 688 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SduI | GDGCHC | 6 cut(s) | 70, 282, 292, 495, 554, 658 |
| SfaNI | GCATC | 2 cut(s) | 64, 354 |
| SfcI | CTRYAG | 2 cut(s) | 522, 771 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 609 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 6 cut(s) | 7, 17, 298, 545, 823, 849 |
| SsiI | CCGC | 2 cut(s) | 140, 785 |
| SspI | AATATT | 1 cut(s) | 446 |
| SspMI | CTAG | 2 cut(s) | 285, 865 |
| SstI | GAGCTC | 1 cut(s) | 495 |
| StyI | CCWWGG | 3 cut(s) | 103, 554, 752 |
| TaaI | ACNGT | 4 cut(s) | 214, 274, 349, 620 |
| TaqI | TCGA | 2 cut(s) | 90, 789 |
| TasI | AATT | 6 cut(s) | 7, 17, 298, 545, 823, 849 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TfiI | GAWTC | 4 cut(s) | 82, 331, 435, 758 |
| Tru1I | TTAA | 2 cut(s) | 209, 497 |
| Tru9I | TTAA | 2 cut(s) | 209, 497 |
| TscAI | CASTG | 1 cut(s) | 847 |
| TseI | GCWGC | 1 cut(s) | 415 |
| TspDTI | ATGAA | 6 cut(s) | 74, 344, 380, 515, 627, 750 |
| TspRI | CASTG | 1 cut(s) | 847 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 685 |
| XapI | RAATTY | 2 cut(s) | 7, 849 |
| XceI | RCATGY | 1 cut(s) | 722 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| XspI | CTAG | 2 cut(s) | 285, 865 |
| ZrmI | AGTACT | 1 cut(s) | 206 |