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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 856 |
| AccB1I | GGYRCC | 3 cut(s) | 609, 719, 800 |
| AccBSI | CCGCTC | 1 cut(s) | 606 |
| AccI | GTMKAC | 1 cut(s) | 732 |
| AccII | CGCG | 1 cut(s) | 594 |
| AccIII | TCCGGA | 1 cut(s) | 574 |
| AciI | CCGC | 4 cut(s) | 79, 286, 606, 723 |
| AclI | AACGTT | 1 cut(s) | 842 |
| AclWI | GGATC | 1 cut(s) | 546 |
| AcsI | RAATTY | 1 cut(s) | 353 |
| AcyI | GRCGYC | 2 cut(s) | 610, 801 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 605, 745, 749 |
| AgsI | TTSAA | 2 cut(s) | 301, 836 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 129, 805 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 487, 497 |
| AluI | AGCT | 4 cut(s) | 155, 161, 487, 497 |
| Alw21I | GWGCWC | 1 cut(s) | 489 |
| Alw26I | GTCTC | 1 cut(s) | 421 |
| AlwI | GGATC | 1 cut(s) | 546 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 574 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApoI | RAATTY | 1 cut(s) | 353 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 330, 398 |
| AspA2I | CCTAGG | 1 cut(s) | 743 |
| AspLEI | GCGC | 3 cut(s) | 596, 612, 803 |
| AsuHPI | GGTGA | 2 cut(s) | 806, 821 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvrII | CCTAGG | 1 cut(s) | 743 |
| BaeGI | GKGCMC | 1 cut(s) | 722 |
| BanI | GGYRCC | 3 cut(s) | 609, 719, 800 |
| BanII | GRGCYC | 1 cut(s) | 489 |
| BbsI | GAAGAC | 2 cut(s) | 273, 401 |
| Bbv12I | GWGCWC | 1 cut(s) | 489 |
| BccI | CCATC | 3 cut(s) | 421, 791, 795 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 440, 474, 709, 743 |
| BciT130I | CCWGG | 2 cut(s) | 131, 807 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 421 |
| BfaI | CTAG | 2 cut(s) | 126, 744 |
| BfoI | RGCGCY | 2 cut(s) | 613, 804 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BlnI | CCTAGG | 1 cut(s) | 743 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 807 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 5 cut(s) | 281, 611, 709, 721, 802 |
| BmrFI | CCNGG | 2 cut(s) | 131, 807 |
| BmsI | GCATC | 2 cut(s) | 94, 805 |
| BpiI | GAAGAC | 2 cut(s) | 273, 401 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 450 |
| BsaHI | GRCGYC | 2 cut(s) | 610, 801 |
| BsaJI | CCNNGG | 3 cut(s) | 555, 743, 805 |
| BsaWI | WCCGGW | 1 cut(s) | 574 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 605, 745, 749 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseAI | TCCGGA | 1 cut(s) | 574 |
| BseBI | CCWGG | 2 cut(s) | 131, 807 |
| BseCI | ATCGAT | 1 cut(s) | 450 |
| BseDI | CCNNGG | 3 cut(s) | 555, 743, 805 |
| BseGI | GGATG | 1 cut(s) | 238 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 605, 745, 749 |
| BseMII | CTCAG | 4 cut(s) | 198, 336, 768, 868 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseRI | GAGGAG | 1 cut(s) | 272 |
| BseSI | GKGCMC | 1 cut(s) | 722 |
| Bsh1236I | CGCG | 1 cut(s) | 594 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 3 cut(s) | 609, 719, 800 |
| BshVI | ATCGAT | 1 cut(s) | 450 |
| BsiHKAI | GWGCWC | 1 cut(s) | 489 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 575 |
| BslFI | GGGAC | 1 cut(s) | 743 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 605, 745, 749 |
| BsmAI | GTCTC | 1 cut(s) | 421 |
| BsmBI | CGTCTC | 1 cut(s) | 421 |
| BsmFI | GGGAC | 1 cut(s) | 743 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 489, 722 |
| Bsp13I | TCCGGA | 1 cut(s) | 574 |
| Bsp143I | GATC | 2 cut(s) | 369, 551 |
| BspACI | CCGC | 4 cut(s) | 79, 286, 606, 723 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 4 cut(s) | 197, 335, 767, 867 |
| BspDI | ATCGAT | 1 cut(s) | 450 |
| BspEI | TCCGGA | 1 cut(s) | 574 |
| BspFNI | CGCG | 1 cut(s) | 594 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspLI | GGNNCC | 5 cut(s) | 281, 611, 709, 721, 802 |
| BspPI | GGATC | 1 cut(s) | 546 |
| BspT107I | GGYRCC | 3 cut(s) | 609, 719, 800 |
| BsrBI | CCGCTC | 1 cut(s) | 606 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 3 cut(s) | 555, 743, 805 |
| BssMI | GATC | 2 cut(s) | 369, 551 |
| BssNI | GRCGYC | 2 cut(s) | 610, 801 |
| BssT1I | CCWWGG | 1 cut(s) | 743 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 807 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 2 cut(s) | 610, 801 |
| BstC8I | GCNNGC | 4 cut(s) | 83, 153, 608, 751 |
| BstDEI | CTNAG | 7 cut(s) | 184, 322, 435, 632, 754, 854, 921 |
| BstDSI | CCRYGG | 1 cut(s) | 555 |
| BstF5I | GGATG | 1 cut(s) | 238 |
| BstFNI | CGCG | 1 cut(s) | 594 |
| BstH2I | RGCGCY | 2 cut(s) | 613, 804 |
| BstHHI | GCGC | 3 cut(s) | 596, 612, 803 |
| BstKTI | GATC | 2 cut(s) | 372, 554 |
| BstMAI | GTCTC | 1 cut(s) | 421 |
| BstMBI | GATC | 2 cut(s) | 369, 551 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 616, 889 |
| BstNI | CCWGG | 2 cut(s) | 131, 807 |
| BstSCI | CCNGG | 2 cut(s) | 129, 805 |
| BstSLI | GKGCMC | 1 cut(s) | 722 |
| BstUI | CGCG | 1 cut(s) | 594 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 401 |
| BstX2I | RGATCY | 1 cut(s) | 551 |
| BstYI | RGATCY | 1 cut(s) | 551 |
| Bsu15I | ATCGAT | 1 cut(s) | 450 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BsuTUI | ATCGAT | 1 cut(s) | 450 |
| BtgI | CCRYGG | 1 cut(s) | 555 |
| BtgZI | GCGATG | 1 cut(s) | 395 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 4 cut(s) | 83, 153, 608, 751 |
| CciI | TCATGA | 1 cut(s) | 481 |
| CfoI | GCGC | 3 cut(s) | 596, 612, 803 |
| ClaI | ATCGAT | 1 cut(s) | 450 |
| CseI | GACGC | 1 cut(s) | 772 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 4 cut(s) | 482, 518, 775, 791 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 7 cut(s) | 184, 322, 435, 632, 754, 854, 921 |
| DinI | GGCGCC | 2 cut(s) | 611, 802 |
| DpnI | GATC | 2 cut(s) | 371, 553 |
| DpnII | GATC | 2 cut(s) | 369, 551 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 856 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 856 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 487 |
| Eco130I | CCWWGG | 1 cut(s) | 743 |
| Eco24I | GRGCYC | 1 cut(s) | 489 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 487 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 487 |
| EcoRI | GAATTC | 1 cut(s) | 353 |
| EcoRII | CCWGG | 2 cut(s) | 129, 805 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 743 |
| EcoT38I | GRGCYC | 1 cut(s) | 489 |
| EgeI | GGCGCC | 2 cut(s) | 611, 802 |
| EheI | GGCGCC | 2 cut(s) | 611, 802 |
| ErhI | CCWWGG | 1 cut(s) | 743 |
| Esp3I | CGTCTC | 1 cut(s) | 421 |
| FaeI | CATG | 4 cut(s) | 485, 521, 778, 794 |
| FaqI | GGGAC | 1 cut(s) | 743 |
| FatI | CATG | 4 cut(s) | 481, 517, 774, 790 |
| FauI | CCCGC | 1 cut(s) | 599 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FblI | GTMKAC | 1 cut(s) | 732 |
| FokI | GGATG | 1 cut(s) | 245 |
| FriOI | GRGCYC | 1 cut(s) | 489 |
| FspBI | CTAG | 2 cut(s) | 126, 744 |
| GlaI | GCGC | 3 cut(s) | 595, 611, 802 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 2 cut(s) | 613, 804 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HapII | CCGG | 1 cut(s) | 575 |
| HgaI | GACGC | 1 cut(s) | 772 |
| HhaI | GCGC | 3 cut(s) | 596, 612, 803 |
| Hin1I | GRCGYC | 2 cut(s) | 610, 801 |
| Hin1II | CATG | 4 cut(s) | 485, 521, 778, 794 |
| Hin6I | GCGC | 3 cut(s) | 594, 610, 801 |
| HinP1I | GCGC | 3 cut(s) | 594, 610, 801 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 115, 220, 236, 447, 468, 578 |
| HpaII | CCGG | 1 cut(s) | 575 |
| HphI | GGTGA | 2 cut(s) | 806, 821 |
| Hpy166II | GTNNAC | 1 cut(s) | 733 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 187, 325, 849 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 311, 482, 549, 575 |
| Hpy8I | GTNNAC | 1 cut(s) | 733 |
| HpyAV | CCTTC | 2 cut(s) | 270, 736 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 649, 842 |
| HpyCH4V | TGCA | 3 cut(s) | 422, 461, 818 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 616, 889 |
| HpyF3I | CTNAG | 7 cut(s) | 184, 322, 435, 632, 754, 854, 921 |
| HpySE526I | ACGT | 3 cut(s) | 135, 649, 842 |
| Hsp92I | GRCGYC | 2 cut(s) | 610, 801 |
| Hsp92II | CATG | 4 cut(s) | 485, 521, 778, 794 |
| HspAI | GCGC | 3 cut(s) | 594, 610, 801 |
| KasI | GGCGCC | 2 cut(s) | 609, 800 |
| Kpn2I | TCCGGA | 1 cut(s) | 574 |
| Kzo9I | GATC | 2 cut(s) | 369, 551 |
| LmnI | GCTCC | 3 cut(s) | 34, 285, 494 |
| LweI | GCATC | 2 cut(s) | 94, 805 |
| MaeI | CTAG | 2 cut(s) | 126, 744 |
| MaeII | ACGT | 3 cut(s) | 135, 649, 842 |
| MaeIII | GTNAC | 2 cut(s) | 5, 454 |
| MalI | GATC | 2 cut(s) | 371, 553 |
| MbiI | CCGCTC | 1 cut(s) | 606 |
| MboI | GATC | 2 cut(s) | 369, 551 |
| MboII | GAAGA | 4 cut(s) | 275, 278, 406, 547 |
| MflI | RGATCY | 1 cut(s) | 551 |
| MhlI | GDGCHC | 2 cut(s) | 489, 722 |
| MluCI | AATT | 5 cut(s) | 17, 306, 353, 544, 583 |
| Mly113I | GGCGCC | 2 cut(s) | 610, 801 |
| MlyI | GAGTC | 1 cut(s) | 214 |
| MnlI | CCTC | 5 cut(s) | 181, 193, 293, 673, 903 |
| MroI | TCCGGA | 1 cut(s) | 574 |
| MroXI | GAANNNNTTC | 2 cut(s) | 330, 398 |
| MseI | TTAA | 2 cut(s) | 339, 347 |
| MslI | CAYNNNNRTG | 4 cut(s) | 231, 530, 792, 795 |
| MspI | CCGG | 1 cut(s) | 575 |
| MspR9I | CCNGG | 2 cut(s) | 131, 807 |
| MvaI | CCWGG | 2 cut(s) | 131, 807 |
| MvnI | CGCG | 1 cut(s) | 594 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 616, 889 |
| NarI | GGCGCC | 2 cut(s) | 610, 801 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 369, 551 |
| NlaIII | CATG | 4 cut(s) | 485, 521, 778, 794 |
| NlaIV | GGNNCC | 5 cut(s) | 281, 611, 709, 721, 802 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PdmI | GAANNNNTTC | 2 cut(s) | 330, 398 |
| PfeI | GAWTC | 5 cut(s) | 115, 236, 447, 468, 578 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PluTI | GGCGCC | 2 cut(s) | 613, 804 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| Psp124BI | GAGCTC | 1 cut(s) | 489 |
| Psp1406I | AACGTT | 1 cut(s) | 842 |
| Psp6I | CCWGG | 2 cut(s) | 129, 805 |
| PspGI | CCWGG | 2 cut(s) | 129, 805 |
| PspN4I | GGNNCC | 5 cut(s) | 281, 611, 709, 721, 802 |
| PsuI | RGATCY | 1 cut(s) | 551 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 231, 530, 792, 795 |
| SacI | GAGCTC | 1 cut(s) | 489 |
| SaqAI | TTAA | 2 cut(s) | 339, 347 |
| Sau3AI | GATC | 2 cut(s) | 369, 551 |
| SchI | GAGTC | 1 cut(s) | 214 |
| ScrFI | CCNGG | 2 cut(s) | 131, 807 |
| SduI | GDGCHC | 2 cut(s) | 489, 722 |
| SfaNI | GCATC | 2 cut(s) | 94, 805 |
| SfoI | GGCGCC | 2 cut(s) | 611, 802 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 231, 530, 792, 795 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 5 cut(s) | 17, 306, 353, 544, 583 |
| SsiI | CCGC | 4 cut(s) | 79, 286, 606, 723 |
| SspDI | GGCGCC | 2 cut(s) | 609, 800 |
| SspMI | CTAG | 2 cut(s) | 126, 744 |
| SstI | GAGCTC | 1 cut(s) | 489 |
| StyD4I | CCNGG | 2 cut(s) | 129, 805 |
| StyI | CCWWGG | 1 cut(s) | 743 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 652, 845 |
| TaqI | TCGA | 4 cut(s) | 120, 445, 450, 548 |
| TasI | AATT | 5 cut(s) | 17, 306, 353, 544, 583 |
| TfiI | GAWTC | 5 cut(s) | 115, 236, 447, 468, 578 |
| Tru1I | TTAA | 2 cut(s) | 339, 347 |
| Tru9I | TTAA | 2 cut(s) | 339, 347 |
| TspDTI | ATGAA | 7 cut(s) | 114, 272, 276, 470, 515, 648, 791 |
| TspGWI | ACGGA | 2 cut(s) | 544, 720 |
| XapI | RAATTY | 1 cut(s) | 353 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 746, 794 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 743 |
| XmiI | GTMKAC | 1 cut(s) | 732 |
| XmnI | GAANNNNTTC | 2 cut(s) | 330, 398 |
| XspI | CTAG | 2 cut(s) | 126, 744 |