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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AciI | CCGC | 1 cut(s) | 340 |
| AclI | AACGTT | 1 cut(s) | 135 |
| AcoI | YGGCCR | 1 cut(s) | 415 |
| AcsI | RAATTY | 1 cut(s) | 407 |
| AfaI | GTAC | 1 cut(s) | 324 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 22, 355 |
| AluBI | AGCT | 4 cut(s) | 155, 179, 259, 383 |
| AluI | AGCT | 4 cut(s) | 155, 179, 259, 383 |
| Alw26I | GTCTC | 1 cut(s) | 473 |
| AoxI | GGCC | 1 cut(s) | 415 |
| ApoI | RAATTY | 1 cut(s) | 407 |
| AspLEI | GCGC | 2 cut(s) | 50, 81 |
| BalI | TGGCCA | 1 cut(s) | 417 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 440, 472 |
| BbsI | GAAGAC | 2 cut(s) | 252, 455 |
| BccI | CCATC | 4 cut(s) | 92, 122, 321, 397 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 1 cut(s) | 473 |
| BfaI | CTAG | 2 cut(s) | 45, 126 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BpiI | GAAGAC | 2 cut(s) | 252, 455 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| BsaBI | GATNNNNATC | 1 cut(s) | 440 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| Bse1I | ACTGG | 1 cut(s) | 39 |
| Bse8I | GATNNNNATC | 1 cut(s) | 440 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 1 cut(s) | 440 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| BseNI | ACTGG | 1 cut(s) | 39 |
| BshFI | GGCC | 1 cut(s) | 417 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| BsmAI | GTCTC | 1 cut(s) | 473 |
| BsmBI | CGTCTC | 1 cut(s) | 473 |
| BsnI | GGCC | 1 cut(s) | 417 |
| Bsp143I | GATC | 1 cut(s) | 441 |
| BspACI | CCGC | 1 cut(s) | 340 |
| BspANI | GGCC | 1 cut(s) | 417 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspQI | GCTCTTC | 1 cut(s) | 390 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 39 |
| BssMI | GATC | 1 cut(s) | 441 |
| Bst6I | CTCTTC | 1 cut(s) | 390 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstHHI | GCGC | 2 cut(s) | 50, 81 |
| BstKTI | GATC | 1 cut(s) | 444 |
| BstMAI | GTCTC | 1 cut(s) | 473 |
| BstMBI | GATC | 1 cut(s) | 441 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 47 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 455 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 284 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 417 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 2 cut(s) | 50, 81 |
| Csp6I | GTAC | 1 cut(s) | 323 |
| CviAII | CATG | 2 cut(s) | 196, 208 |
| CviJI | RGCY | 9 cut(s) | 95, 124, 155, 179, 259, 336, 383, 417, 422 |
| CviKI_1 | RGCY | 9 cut(s) | 95, 124, 155, 179, 259, 336, 383, 417, 422 |
| CviQI | GTAC | 1 cut(s) | 323 |
| DpnI | GATC | 1 cut(s) | 443 |
| DpnII | GATC | 1 cut(s) | 441 |
| DraI | TTTAAA | 1 cut(s) | 487 |
| EaeI | YGGCCR | 1 cut(s) | 415 |
| Eam1104I | CTCTTC | 1 cut(s) | 390 |
| EarI | CTCTTC | 1 cut(s) | 390 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| Esp3I | CGTCTC | 1 cut(s) | 473 |
| FaeI | CATG | 2 cut(s) | 199, 211 |
| FaiI | YATR | 8 cut(s) | 60, 188, 197, 209, 262, 333, 372, 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 2 cut(s) | 195, 207 |
| FokI | GGATG | 1 cut(s) | 101 |
| FspBI | CTAG | 2 cut(s) | 45, 126 |
| GlaI | GCGC | 2 cut(s) | 49, 80 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeIII | GGCC | 1 cut(s) | 417 |
| HhaI | GCGC | 2 cut(s) | 50, 81 |
| Hin1II | CATG | 2 cut(s) | 199, 211 |
| Hin6I | GCGC | 2 cut(s) | 48, 79 |
| HinP1I | GCGC | 2 cut(s) | 48, 79 |
| HinfI | GANTC | 2 cut(s) | 299, 451 |
| Hpy188I | TCNGA | 3 cut(s) | 132, 402, 499 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 107, 196, 296, 311, 445 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 47 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 2 cut(s) | 199, 211 |
| HspAI | GCGC | 2 cut(s) | 48, 79 |
| Kzo9I | GATC | 1 cut(s) | 441 |
| LguI | GCTCTTC | 1 cut(s) | 390 |
| LpnPI | CCDG | 8 cut(s) | 20, 23, 36, 92, 290, 317, 324, 489 |
| LweI | GCATC | 1 cut(s) | 205 |
| MaeI | CTAG | 2 cut(s) | 45, 126 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 5, 296 |
| MalI | GATC | 1 cut(s) | 443 |
| MboI | GATC | 1 cut(s) | 441 |
| MboII | GAAGA | 3 cut(s) | 257, 377, 460 |
| MlsI | TGGCCA | 1 cut(s) | 417 |
| MluCI | AATT | 4 cut(s) | 189, 281, 407, 491 |
| MluNI | TGGCCA | 1 cut(s) | 417 |
| MlyI | GAGTC | 2 cut(s) | 293, 445 |
| MnlI | CCTC | 5 cut(s) | 31, 235, 245, 347, 471 |
| Mox20I | TGGCCA | 1 cut(s) | 417 |
| MscI | TGGCCA | 1 cut(s) | 417 |
| MseI | TTAA | 3 cut(s) | 90, 273, 486 |
| MslI | CAYNNNNRTG | 1 cut(s) | 210 |
| Msp20I | TGGCCA | 1 cut(s) | 417 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 47 |
| NdeII | GATC | 1 cut(s) | 441 |
| NlaIII | CATG | 2 cut(s) | 199, 211 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PciSI | GCTCTTC | 1 cut(s) | 390 |
| PleI | GAGTC | 2 cut(s) | 293, 445 |
| PpsI | GAGTC | 2 cut(s) | 293, 445 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp1406I | AACGTT | 1 cut(s) | 135 |
| RsaI | GTAC | 1 cut(s) | 324 |
| RsaNI | GTAC | 1 cut(s) | 323 |
| RseI | CAYNNNNRTG | 1 cut(s) | 210 |
| SapI | GCTCTTC | 1 cut(s) | 390 |
| SaqAI | TTAA | 3 cut(s) | 90, 273, 486 |
| Sau3AI | GATC | 1 cut(s) | 441 |
| SchI | GAGTC | 2 cut(s) | 293, 445 |
| SetI | ASST | 8 cut(s) | 12, 65, 138, 157, 181, 237, 261, 385 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 210 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 4 cut(s) | 189, 281, 407, 491 |
| SsiI | CCGC | 1 cut(s) | 340 |
| SspI | AATATT | 1 cut(s) | 292 |
| SspMI | CTAG | 2 cut(s) | 45, 126 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 3 cut(s) | 70, 377, 444 |
| TasI | AATT | 4 cut(s) | 189, 281, 407, 491 |
| Tru1I | TTAA | 3 cut(s) | 90, 273, 486 |
| Tru9I | TTAA | 3 cut(s) | 90, 273, 486 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 1 cut(s) | 224 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 407 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XspI | CTAG | 2 cut(s) | 45, 126 |