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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 726 |
| AccII | CGCG | 1 cut(s) | 711 |
| AccIII | TCCGGA | 2 cut(s) | 95, 691 |
| AciI | CCGC | 2 cut(s) | 56, 73 |
| AclI | AACGTT | 1 cut(s) | 227 |
| AclWI | GGATC | 2 cut(s) | 593, 663 |
| AcsI | RAATTY | 1 cut(s) | 470 |
| AcyI | GRCGYC | 1 cut(s) | 727 |
| AfaI | GTAC | 1 cut(s) | 293 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 722 |
| AgsI | TTSAA | 1 cut(s) | 418 |
| AjiI | CACGTC | 3 cut(s) | 16, 40, 181 |
| AjnI | CCWGG | 2 cut(s) | 79, 174 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 330, 362 |
| AluBI | AGCT | 5 cut(s) | 200, 206, 370, 604, 614 |
| AluI | AGCT | 5 cut(s) | 200, 206, 370, 604, 614 |
| Alw21I | GWGCWC | 1 cut(s) | 606 |
| Alw26I | GTCTC | 1 cut(s) | 334 |
| AlwI | GGATC | 2 cut(s) | 593, 663 |
| Ama87I | CYCGRG | 1 cut(s) | 164 |
| Aor13HI | TCCGGA | 2 cut(s) | 95, 691 |
| AoxI | GGCC | 1 cut(s) | 138 |
| ApeKI | GCWGC | 2 cut(s) | 58, 70 |
| ApoI | RAATTY | 1 cut(s) | 470 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 447, 515 |
| AspLEI | GCGC | 2 cut(s) | 713, 729 |
| AspS9I | GGNCC | 2 cut(s) | 27, 75 |
| AvaI | CYCGRG | 1 cut(s) | 164 |
| AvaII | GGWCC | 2 cut(s) | 27, 75 |
| BanI | GGYRCC | 1 cut(s) | 726 |
| BanII | GRGCYC | 1 cut(s) | 606 |
| BbsI | GAAGAC | 2 cut(s) | 318, 518 |
| Bbv12I | GWGCWC | 1 cut(s) | 606 |
| BbvI | GCAGC | 2 cut(s) | 45, 82 |
| BccI | CCATC | 6 cut(s) | 137, 260, 384, 538, 539, 576 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 557, 591 |
| BciT130I | CCWGG | 2 cut(s) | 81, 176 |
| BciVI | GTATCC | 1 cut(s) | 148 |
| BcoDI | GTCTC | 1 cut(s) | 334 |
| BfaI | CTAG | 2 cut(s) | 171, 380 |
| BfmI | CTRYAG | 1 cut(s) | 576 |
| BfoI | RGCGCY | 1 cut(s) | 730 |
| BfuI | GTATCC | 1 cut(s) | 148 |
| BisI | GCNGC | 2 cut(s) | 59, 71 |
| BlsI | GCNGC | 2 cut(s) | 60, 72 |
| Bme1390I | CCNGG | 2 cut(s) | 81, 176 |
| Bme18I | GGWCC | 2 cut(s) | 27, 75 |
| BmeT110I | CYCGRG | 1 cut(s) | 164 |
| BmgBI | CACGTC | 3 cut(s) | 16, 40, 181 |
| BmgT120I | GGNCC | 2 cut(s) | 27, 75 |
| BmiI | GGNNCC | 5 cut(s) | 28, 29, 77, 94, 728 |
| BmrFI | CCNGG | 2 cut(s) | 81, 176 |
| BmsI | GCATC | 1 cut(s) | 139 |
| BpiI | GAAGAC | 2 cut(s) | 318, 518 |
| BpmI | CTGGAG | 1 cut(s) | 272 |
| BpuEI | CTTGAG | 1 cut(s) | 186 |
| Bsa29I | ATCGAT | 1 cut(s) | 567 |
| BsaHI | GRCGYC | 1 cut(s) | 727 |
| BsaI | GGTCTC | 1 cut(s) | 334 |
| BsaJI | CCNNGG | 2 cut(s) | 79, 672 |
| BsaWI | WCCGGW | 2 cut(s) | 95, 691 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 722 |
| Bse1I | ACTGG | 2 cut(s) | 94, 289 |
| BseAI | TCCGGA | 2 cut(s) | 95, 691 |
| BseBI | CCWGG | 2 cut(s) | 81, 176 |
| BseCI | ATCGAT | 1 cut(s) | 567 |
| BseDI | CCNNGG | 2 cut(s) | 79, 672 |
| BseGI | GGATG | 4 cut(s) | 255, 283, 587, 642 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 722 |
| BseNI | ACTGG | 2 cut(s) | 94, 289 |
| BseXI | GCAGC | 2 cut(s) | 45, 82 |
| BseYI | CCCAGC | 1 cut(s) | 366 |
| Bsh1236I | CGCG | 1 cut(s) | 711 |
| BshFI | GGCC | 1 cut(s) | 140 |
| BshNI | GGYRCC | 1 cut(s) | 726 |
| BshVI | ATCGAT | 1 cut(s) | 567 |
| BsiHKAI | GWGCWC | 1 cut(s) | 606 |
| BsiHKCI | CYCGRG | 1 cut(s) | 164 |
| BsiSI | CCGG | 2 cut(s) | 96, 692 |
| BslFI | GGGAC | 1 cut(s) | 40 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 722 |
| BsmAI | GTCTC | 1 cut(s) | 334 |
| BsmFI | GGGAC | 1 cut(s) | 40 |
| BsnI | GGCC | 1 cut(s) | 140 |
| Bso31I | GGTCTC | 1 cut(s) | 334 |
| BsoBI | CYCGRG | 1 cut(s) | 164 |
| Bsp1286I | GDGCHC | 1 cut(s) | 606 |
| Bsp13I | TCCGGA | 2 cut(s) | 95, 691 |
| Bsp143I | GATC | 2 cut(s) | 585, 668 |
| Bsp19I | CCATGG | 1 cut(s) | 672 |
| BspACI | CCGC | 2 cut(s) | 56, 73 |
| BspANI | GGCC | 1 cut(s) | 140 |
| BspDI | ATCGAT | 1 cut(s) | 567 |
| BspEI | TCCGGA | 2 cut(s) | 95, 691 |
| BspFNI | CGCG | 1 cut(s) | 711 |
| BspHI | TCATGA | 2 cut(s) | 115, 598 |
| BspLI | GGNNCC | 5 cut(s) | 28, 29, 77, 94, 728 |
| BspMAI | CTGCAG | 1 cut(s) | 580 |
| BspPI | GGATC | 2 cut(s) | 593, 663 |
| BspT107I | GGYRCC | 1 cut(s) | 726 |
| BspTNI | GGTCTC | 1 cut(s) | 334 |
| BsrI | ACTGG | 2 cut(s) | 94, 289 |
| BssECI | CCNNGG | 2 cut(s) | 79, 672 |
| BssMI | GATC | 2 cut(s) | 585, 668 |
| BssNI | GRCGYC | 1 cut(s) | 727 |
| BssT1I | CCWWGG | 1 cut(s) | 672 |
| Bst2UI | CCWGG | 2 cut(s) | 81, 176 |
| Bst4CI | ACNGT | 1 cut(s) | 190 |
| BstACI | GRCGYC | 1 cut(s) | 727 |
| BstC8I | GCNNGC | 1 cut(s) | 198 |
| BstDEI | CTNAG | 2 cut(s) | 552, 717 |
| BstDSI | CCRYGG | 1 cut(s) | 672 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 720 |
| BstF5I | GGATG | 4 cut(s) | 255, 283, 587, 642 |
| BstFNI | CGCG | 1 cut(s) | 711 |
| BstH2I | RGCGCY | 1 cut(s) | 730 |
| BstHHI | GCGC | 2 cut(s) | 713, 729 |
| BstKTI | GATC | 2 cut(s) | 588, 671 |
| BstMAI | GTCTC | 1 cut(s) | 334 |
| BstMBI | GATC | 2 cut(s) | 585, 668 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 18, 67, 212, 221, 242 |
| BstNI | CCWGG | 2 cut(s) | 81, 176 |
| BstSCI | CCNGG | 2 cut(s) | 79, 174 |
| BstSFI | CTRYAG | 1 cut(s) | 576 |
| BstUI | CGCG | 1 cut(s) | 711 |
| BstV1I | GCAGC | 2 cut(s) | 45, 82 |
| BstV2I | GAAGAC | 2 cut(s) | 318, 518 |
| BstX2I | RGATCY | 1 cut(s) | 668 |
| BstYI | RGATCY | 1 cut(s) | 668 |
| Bsu15I | ATCGAT | 1 cut(s) | 567 |
| BsuI | GTATCC | 1 cut(s) | 148 |
| BsuRI | GGCC | 1 cut(s) | 140 |
| BsuTUI | ATCGAT | 1 cut(s) | 567 |
| BtgI | CCRYGG | 1 cut(s) | 672 |
| BtgZI | GCGATG | 1 cut(s) | 512 |
| BtrI | CACGTC | 3 cut(s) | 16, 40, 181 |
| BtsCI | GGATG | 4 cut(s) | 255, 283, 587, 642 |
| BtsI | GCAGTG | 2 cut(s) | 7, 31 |
| BtsIMutI | CAGTG | 2 cut(s) | 7, 31 |
| Cac8I | GCNNGC | 1 cut(s) | 198 |
| CciI | TCATGA | 2 cut(s) | 115, 598 |
| CfoI | GCGC | 2 cut(s) | 713, 729 |
| Cfr13I | GGNCC | 2 cut(s) | 27, 75 |
| ClaI | ATCGAT | 1 cut(s) | 567 |
| Csp6I | GTAC | 1 cut(s) | 292 |
| CviAII | CATG | 4 cut(s) | 63, 116, 599, 673 |
| CviQI | GTAC | 1 cut(s) | 292 |
| DdeI | CTNAG | 2 cut(s) | 552, 717 |
| DinI | GGCGCC | 1 cut(s) | 728 |
| DpnI | GATC | 2 cut(s) | 587, 670 |
| DpnII | GATC | 2 cut(s) | 585, 668 |
| Ecl136II | GAGCTC | 1 cut(s) | 604 |
| Eco130I | CCWWGG | 1 cut(s) | 672 |
| Eco24I | GRGCYC | 1 cut(s) | 606 |
| Eco31I | GGTCTC | 1 cut(s) | 334 |
| Eco32I | GATATC | 1 cut(s) | 101 |
| Eco47I | GGWCC | 2 cut(s) | 27, 75 |
| Eco53kI | GAGCTC | 1 cut(s) | 604 |
| Eco88I | CYCGRG | 1 cut(s) | 164 |
| EcoICRI | GAGCTC | 1 cut(s) | 604 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 720 |
| EcoO109I | RGGNCCY | 1 cut(s) | 27 |
| EcoRI | GAATTC | 1 cut(s) | 470 |
| EcoRII | CCWGG | 2 cut(s) | 79, 174 |
| EcoRV | GATATC | 1 cut(s) | 101 |
| EcoT14I | CCWWGG | 1 cut(s) | 672 |
| EcoT38I | GRGCYC | 1 cut(s) | 606 |
| EgeI | GGCGCC | 1 cut(s) | 728 |
| EheI | GGCGCC | 1 cut(s) | 728 |
| ErhI | CCWWGG | 1 cut(s) | 672 |
| FaeI | CATG | 4 cut(s) | 66, 119, 602, 676 |
| FaqI | GGGAC | 1 cut(s) | 40 |
| FatI | CATG | 4 cut(s) | 62, 115, 598, 672 |
| FauI | CCCGC | 1 cut(s) | 63 |
| FauNDI | CATATG | 1 cut(s) | 273 |
| Fnu4HI | GCNGC | 2 cut(s) | 59, 71 |
| FokI | GGATG | 4 cut(s) | 242, 290, 594, 629 |
| FriOI | GRGCYC | 1 cut(s) | 606 |
| Fsp4HI | GCNGC | 2 cut(s) | 59, 71 |
| FspBI | CTAG | 2 cut(s) | 171, 380 |
| GlaI | GCGC | 2 cut(s) | 712, 728 |
| GluI | GCNGC | 2 cut(s) | 59, 71 |
| GsaI | CCCAGC | 1 cut(s) | 370 |
| GsuI | CTGGAG | 1 cut(s) | 272 |
| HaeII | RGCGCY | 1 cut(s) | 730 |
| HaeIII | GGCC | 1 cut(s) | 140 |
| HapII | CCGG | 2 cut(s) | 96, 692 |
| HhaI | GCGC | 2 cut(s) | 713, 729 |
| Hin1I | GRCGYC | 1 cut(s) | 727 |
| Hin1II | CATG | 4 cut(s) | 66, 119, 602, 676 |
| Hin6I | GCGC | 2 cut(s) | 711, 727 |
| HinP1I | GCGC | 2 cut(s) | 711, 727 |
| HindIII | AAGCTT | 1 cut(s) | 204 |
| HinfI | GANTC | 7 cut(s) | 147, 160, 265, 281, 362, 564, 695 |
| HpaII | CCGG | 2 cut(s) | 96, 692 |
| Hpy166II | GTNNAC | 1 cut(s) | 124 |
| Hpy188I | TCNGA | 2 cut(s) | 442, 538 |
| Hpy188III | TCNNGA | 8 cut(s) | 96, 116, 164, 374, 428, 599, 666, 692 |
| Hpy8I | GTNNAC | 1 cut(s) | 124 |
| HpyAV | CCTTC | 2 cut(s) | 312, 535 |
| HpyCH4III | ACNGT | 1 cut(s) | 190 |
| HpyCH4IV | ACGT | 5 cut(s) | 15, 39, 180, 227, 354 |
| HpyCH4V | TGCA | 1 cut(s) | 578 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 18, 67, 212, 221, 242 |
| HpyF3I | CTNAG | 2 cut(s) | 552, 717 |
| HpySE526I | ACGT | 5 cut(s) | 15, 39, 180, 227, 354 |
| Hsp92I | GRCGYC | 1 cut(s) | 727 |
| Hsp92II | CATG | 4 cut(s) | 66, 119, 602, 676 |
| HspAI | GCGC | 2 cut(s) | 711, 727 |
| KasI | GGCGCC | 1 cut(s) | 726 |
| KflI | GGGWCCC | 1 cut(s) | 27 |
| Kpn2I | TCCGGA | 2 cut(s) | 95, 691 |
| Kzo9I | GATC | 2 cut(s) | 585, 668 |
| LmnI | GCTCC | 3 cut(s) | 98, 291, 611 |
| Lsp1109I | GCAGC | 2 cut(s) | 45, 82 |
| LweI | GCATC | 1 cut(s) | 139 |
| MaeI | CTAG | 2 cut(s) | 171, 380 |
| MaeII | ACGT | 5 cut(s) | 15, 39, 180, 227, 354 |
| MaeIII | GTNAC | 2 cut(s) | 359, 571 |
| MalI | GATC | 2 cut(s) | 587, 670 |
| MboI | GATC | 2 cut(s) | 585, 668 |
| MboII | GAAGA | 5 cut(s) | 320, 323, 350, 523, 664 |
| MflI | RGATCY | 1 cut(s) | 668 |
| MhlI | GDGCHC | 1 cut(s) | 606 |
| MluCI | AATT | 4 cut(s) | 470, 539, 661, 700 |
| Mly113I | GGCGCC | 1 cut(s) | 727 |
| MlyI | GAGTC | 2 cut(s) | 259, 356 |
| MnlI | CCTC | 3 cut(s) | 226, 410, 716 |
| MroI | TCCGGA | 2 cut(s) | 95, 691 |
| MroXI | GAANNNNTTC | 2 cut(s) | 447, 515 |
| MseI | TTAA | 2 cut(s) | 456, 464 |
| MslI | CAYNNNNRTG | 4 cut(s) | 260, 276, 408, 647 |
| MspA1I | CMGCKG | 2 cut(s) | 58, 73 |
| MspI | CCGG | 2 cut(s) | 96, 692 |
| MspR9I | CCNGG | 2 cut(s) | 81, 176 |
| MvaI | CCWGG | 2 cut(s) | 81, 176 |
| MvnI | CGCG | 1 cut(s) | 711 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 18, 67, 212, 221, 242 |
| NarI | GGCGCC | 1 cut(s) | 727 |
| NcoI | CCATGG | 1 cut(s) | 672 |
| NdeI | CATATG | 1 cut(s) | 273 |
| NdeII | GATC | 2 cut(s) | 585, 668 |
| NlaIII | CATG | 4 cut(s) | 66, 119, 602, 676 |
| NlaIV | GGNNCC | 5 cut(s) | 28, 29, 77, 94, 728 |
| NmuCI | GTSAC | 1 cut(s) | 359 |
| PaeR7I | CTCGAG | 1 cut(s) | 164 |
| PagI | TCATGA | 2 cut(s) | 115, 598 |
| PdmI | GAANNNNTTC | 2 cut(s) | 447, 515 |
| PfeI | GAWTC | 5 cut(s) | 147, 160, 281, 564, 695 |
| PkrI | GCNGC | 2 cut(s) | 60, 72 |
| PleI | GAGTC | 2 cut(s) | 259, 356 |
| PluTI | GGCGCC | 1 cut(s) | 730 |
| PpsI | GAGTC | 2 cut(s) | 259, 356 |
| PpuMI | RGGWCCY | 1 cut(s) | 27 |
| Psp124BI | GAGCTC | 1 cut(s) | 606 |
| Psp1406I | AACGTT | 1 cut(s) | 227 |
| Psp5II | RGGWCCY | 1 cut(s) | 27 |
| Psp6I | CCWGG | 2 cut(s) | 79, 174 |
| PspFI | CCCAGC | 1 cut(s) | 366 |
| PspGI | CCWGG | 2 cut(s) | 79, 174 |
| PspN4I | GGNNCC | 5 cut(s) | 28, 29, 77, 94, 728 |
| PspPI | GGNCC | 2 cut(s) | 27, 75 |
| PspPPI | RGGWCCY | 1 cut(s) | 27 |
| PstI | CTGCAG | 1 cut(s) | 580 |
| PsuI | RGATCY | 1 cut(s) | 668 |
| RsaI | GTAC | 1 cut(s) | 293 |
| RsaNI | GTAC | 1 cut(s) | 292 |
| RseI | CAYNNNNRTG | 4 cut(s) | 260, 276, 408, 647 |
| SacI | GAGCTC | 1 cut(s) | 606 |
| SaqAI | TTAA | 2 cut(s) | 456, 464 |
| SatI | GCNGC | 2 cut(s) | 59, 71 |
| Sau3AI | GATC | 2 cut(s) | 585, 668 |
| Sau96I | GGNCC | 2 cut(s) | 27, 75 |
| SchI | GAGTC | 2 cut(s) | 259, 356 |
| ScrFI | CCNGG | 2 cut(s) | 81, 176 |
| SduI | GDGCHC | 1 cut(s) | 606 |
| SfaNI | GCATC | 1 cut(s) | 139 |
| SfcI | CTRYAG | 1 cut(s) | 576 |
| SfoI | GGCGCC | 1 cut(s) | 728 |
| Sfr274I | CTCGAG | 1 cut(s) | 164 |
| SinI | GGWCC | 2 cut(s) | 27, 75 |
| SlaI | CTCGAG | 1 cut(s) | 164 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 260, 276, 408, 647 |
| SmlI | CTYRAG | 2 cut(s) | 164, 201 |
| SmoI | CTYRAG | 2 cut(s) | 164, 201 |
| Sse9I | AATT | 4 cut(s) | 470, 539, 661, 700 |
| SsiI | CCGC | 2 cut(s) | 56, 73 |
| SspDI | GGCGCC | 1 cut(s) | 726 |
| SspMI | CTAG | 2 cut(s) | 171, 380 |
| SstI | GAGCTC | 1 cut(s) | 606 |
| StyD4I | CCNGG | 2 cut(s) | 79, 174 |
| StyI | CCWWGG | 1 cut(s) | 672 |
| TaaI | ACNGT | 1 cut(s) | 190 |
| TaiI | ACGT | 5 cut(s) | 18, 42, 183, 230, 357 |
| TaqI | TCGA | 4 cut(s) | 165, 562, 567, 665 |
| TasI | AATT | 4 cut(s) | 470, 539, 661, 700 |
| TfiI | GAWTC | 5 cut(s) | 147, 160, 281, 564, 695 |
| Tru1I | TTAA | 2 cut(s) | 456, 464 |
| Tru9I | TTAA | 2 cut(s) | 456, 464 |
| TscAI | CASTG | 2 cut(s) | 14, 38 |
| TseFI | GTSAC | 1 cut(s) | 359 |
| TseI | GCWGC | 2 cut(s) | 58, 70 |
| Tsp45I | GTSAC | 1 cut(s) | 359 |
| TspDTI | ATGAA | 5 cut(s) | 104, 317, 321, 587, 632 |
| TspGWI | ACGGA | 1 cut(s) | 347 |
| TspRI | CASTG | 2 cut(s) | 14, 38 |
| VpaK11BI | GGWCC | 2 cut(s) | 27, 75 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 720 |
| XapI | RAATTY | 1 cut(s) | 470 |
| XhoI | CTCGAG | 1 cut(s) | 164 |
| XmnI | GAANNNNTTC | 2 cut(s) | 447, 515 |
| XspI | CTAG | 2 cut(s) | 171, 380 |