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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 136 |
| Acc36I | ACCTGC | 1 cut(s) | 136 |
| AccII | CGCG | 1 cut(s) | 107 |
| AciI | CCGC | 1 cut(s) | 53 |
| AclWI | GGATC | 1 cut(s) | 303 |
| AcuI | CTGAAG | 1 cut(s) | 351 |
| AcyI | GRCGYC | 1 cut(s) | 352 |
| AfeI | AGCGCT | 1 cut(s) | 420 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 224 |
| AgsI | TTSAA | 2 cut(s) | 258, 469 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 417, 449 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 287, 319 |
| AluBI | AGCT | 2 cut(s) | 103, 141 |
| AluI | AGCT | 2 cut(s) | 103, 141 |
| AlwI | GGATC | 1 cut(s) | 303 |
| Aor51HI | AGCGCT | 1 cut(s) | 420 |
| ApeKI | GCWGC | 8 cut(s) | 21, 32, 48, 100, 131, 134, 145, 163 |
| AspLEI | GCGC | 2 cut(s) | 109, 421 |
| AsuC2I | CCSGG | 1 cut(s) | 293 |
| BbvI | GCAGC | 8 cut(s) | 33, 44, 60, 112, 118, 121, 132, 150 |
| BcnI | CCSGG | 1 cut(s) | 293 |
| BfaI | CTAG | 1 cut(s) | 422 |
| BfmI | CTRYAG | 3 cut(s) | 19, 30, 46 |
| BfoI | RGCGCY | 1 cut(s) | 422 |
| BfuAI | ACCTGC | 1 cut(s) | 136 |
| BisI | GCNGC | 8 cut(s) | 22, 33, 49, 101, 132, 135, 146, 164 |
| BlsI | GCNGC | 8 cut(s) | 23, 34, 50, 102, 133, 136, 147, 165 |
| Bme1390I | CCNGG | 1 cut(s) | 293 |
| BmrFI | CCNGG | 1 cut(s) | 293 |
| BmsI | GCATC | 2 cut(s) | 336, 388 |
| BpuMI | CCSGG | 1 cut(s) | 293 |
| BsaHI | GRCGYC | 1 cut(s) | 352 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 371, 401 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 224 |
| Bse3DI | GCAATG | 1 cut(s) | 445 |
| BseGI | GGATG | 1 cut(s) | 403 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 224 |
| BseMI | GCAATG | 1 cut(s) | 445 |
| BseMII | CTCAG | 1 cut(s) | 385 |
| BseRI | GAGGAG | 1 cut(s) | 446 |
| BseXI | GCAGC | 8 cut(s) | 33, 44, 60, 112, 118, 121, 132, 150 |
| BseYI | CCCAGC | 1 cut(s) | 37 |
| BsgI | GTGCAG | 1 cut(s) | 135 |
| Bsh1236I | CGCG | 1 cut(s) | 107 |
| BsiSI | CCGG | 1 cut(s) | 293 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 224 |
| Bsp143I | GATC | 3 cut(s) | 193, 295, 427 |
| BspACI | CCGC | 1 cut(s) | 53 |
| BspCNI | CTCAG | 1 cut(s) | 384 |
| BspFNI | CGCG | 1 cut(s) | 107 |
| BspMAI | CTGCAG | 3 cut(s) | 23, 34, 50 |
| BspMI | ACCTGC | 1 cut(s) | 136 |
| BspPI | GGATC | 1 cut(s) | 303 |
| BsrDI | GCAATG | 1 cut(s) | 445 |
| BssMI | GATC | 3 cut(s) | 193, 295, 427 |
| BssNI | GRCGYC | 1 cut(s) | 352 |
| Bst4CI | ACNGT | 2 cut(s) | 72, 222 |
| BstACI | GRCGYC | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 8 cut(s) | 19, 53, 78, 105, 139, 143, 150, 327 |
| BstDEI | CTNAG | 2 cut(s) | 371, 483 |
| BstEII | GGTNACC | 1 cut(s) | 229 |
| BstF5I | GGATG | 1 cut(s) | 403 |
| BstFNI | CGCG | 1 cut(s) | 107 |
| BstH2I | RGCGCY | 1 cut(s) | 422 |
| BstHHI | GCGC | 2 cut(s) | 109, 421 |
| BstKTI | GATC | 3 cut(s) | 196, 298, 430 |
| BstMBI | GATC | 3 cut(s) | 193, 295, 427 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 38, 106, 121, 154, 163 |
| BstNSI | RCATGY | 2 cut(s) | 100, 329 |
| BstPI | GGTNACC | 1 cut(s) | 229 |
| BstSCI | CCNGG | 1 cut(s) | 291 |
| BstSFI | CTRYAG | 3 cut(s) | 19, 30, 46 |
| BstUI | CGCG | 1 cut(s) | 107 |
| BstV1I | GCAGC | 8 cut(s) | 33, 44, 60, 112, 118, 121, 132, 150 |
| BstX2I | RGATCY | 1 cut(s) | 295 |
| BstYI | RGATCY | 1 cut(s) | 295 |
| BtsCI | GGATG | 1 cut(s) | 403 |
| BtsI | GCAGTG | 1 cut(s) | 152 |
| BtsIMutI | CAGTG | 1 cut(s) | 152 |
| BveI | ACCTGC | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 8 cut(s) | 19, 53, 78, 105, 139, 143, 150, 327 |
| CfoI | GCGC | 2 cut(s) | 109, 421 |
| CseI | GACGC | 1 cut(s) | 360 |
| CviAII | CATG | 3 cut(s) | 97, 191, 326 |
| DdeI | CTNAG | 2 cut(s) | 371, 483 |
| DpnI | GATC | 3 cut(s) | 195, 297, 429 |
| DpnII | GATC | 3 cut(s) | 193, 295, 427 |
| Eco47III | AGCGCT | 1 cut(s) | 420 |
| Eco57I | CTGAAG | 1 cut(s) | 351 |
| Eco91I | GGTNACC | 1 cut(s) | 229 |
| EcoO65I | GGTNACC | 1 cut(s) | 229 |
| FaeI | CATG | 3 cut(s) | 100, 194, 329 |
| FaiI | YATR | 9 cut(s) | 82, 98, 192, 327, 357, 359, 384, 386, 412 |
| FatI | CATG | 3 cut(s) | 96, 190, 325 |
| FauI | CCCGC | 1 cut(s) | 60 |
| FauNDI | CATATG | 1 cut(s) | 357 |
| Fnu4HI | GCNGC | 8 cut(s) | 22, 33, 49, 101, 132, 135, 146, 164 |
| FokI | GGATG | 1 cut(s) | 410 |
| Fsp4HI | GCNGC | 8 cut(s) | 22, 33, 49, 101, 132, 135, 146, 164 |
| FspBI | CTAG | 1 cut(s) | 422 |
| GlaI | GCGC | 2 cut(s) | 108, 420 |
| GluI | GCNGC | 8 cut(s) | 22, 33, 49, 101, 132, 135, 146, 164 |
| GsaI | CCCAGC | 1 cut(s) | 41 |
| HaeII | RGCGCY | 1 cut(s) | 422 |
| HapII | CCGG | 1 cut(s) | 293 |
| HgaI | GACGC | 1 cut(s) | 360 |
| HhaI | GCGC | 2 cut(s) | 109, 421 |
| Hin1I | GRCGYC | 1 cut(s) | 352 |
| Hin1II | CATG | 3 cut(s) | 100, 194, 329 |
| Hin6I | GCGC | 2 cut(s) | 107, 419 |
| HinP1I | GCGC | 2 cut(s) | 107, 419 |
| HindIII | AAGCTT | 1 cut(s) | 139 |
| HinfI | GANTC | 2 cut(s) | 198, 449 |
| HpaII | CCGG | 1 cut(s) | 293 |
| Hpy166II | GTNNAC | 1 cut(s) | 94 |
| Hpy188I | TCNGA | 2 cut(s) | 212, 374 |
| Hpy188III | TCNNGA | 2 cut(s) | 280, 343 |
| Hpy8I | GTNNAC | 1 cut(s) | 94 |
| Hpy99I | CGWCG | 1 cut(s) | 354 |
| HpyAV | CCTTC | 1 cut(s) | 67 |
| HpyCH4III | ACNGT | 2 cut(s) | 72, 222 |
| HpyCH4V | TGCA | 8 cut(s) | 21, 32, 48, 80, 100, 137, 152, 401 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 38, 106, 121, 154, 163 |
| HpyF3I | CTNAG | 2 cut(s) | 371, 483 |
| Hsp92I | GRCGYC | 1 cut(s) | 352 |
| Hsp92II | CATG | 3 cut(s) | 100, 194, 329 |
| HspAI | GCGC | 2 cut(s) | 107, 419 |
| Kzo9I | GATC | 3 cut(s) | 193, 295, 427 |
| LmnI | GCTCC | 1 cut(s) | 162 |
| Lsp1109I | GCAGC | 8 cut(s) | 33, 44, 60, 112, 118, 121, 132, 150 |
| LweI | GCATC | 2 cut(s) | 336, 388 |
| MaeI | CTAG | 1 cut(s) | 422 |
| MaeIII | GTNAC | 2 cut(s) | 175, 229 |
| MalI | GATC | 3 cut(s) | 195, 297, 429 |
| MboI | GATC | 3 cut(s) | 193, 295, 427 |
| MboII | GAAGA | 1 cut(s) | 437 |
| MflI | RGATCY | 1 cut(s) | 295 |
| MlyI | GAGTC | 1 cut(s) | 192 |
| MnlI | CCTC | 5 cut(s) | 15, 36, 260, 464, 467 |
| MspI | CCGG | 1 cut(s) | 293 |
| MspR9I | CCNGG | 1 cut(s) | 293 |
| MvnI | CGCG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 38, 106, 121, 154, 163 |
| NciI | CCSGG | 1 cut(s) | 293 |
| NdeI | CATATG | 1 cut(s) | 357 |
| NdeII | GATC | 3 cut(s) | 193, 295, 427 |
| NlaIII | CATG | 3 cut(s) | 100, 194, 329 |
| NspI | RCATGY | 2 cut(s) | 100, 329 |
| PaeI | GCATGC | 1 cut(s) | 329 |
| PaqCI | CACCTGC | 1 cut(s) | 136 |
| PfeI | GAWTC | 1 cut(s) | 449 |
| PkrI | GCNGC | 8 cut(s) | 23, 34, 50, 102, 133, 136, 147, 165 |
| PleI | GAGTC | 1 cut(s) | 192 |
| PpsI | GAGTC | 1 cut(s) | 192 |
| PspEI | GGTNACC | 1 cut(s) | 229 |
| PspFI | CCCAGC | 1 cut(s) | 37 |
| PstI | CTGCAG | 3 cut(s) | 23, 34, 50 |
| PsuI | RGATCY | 1 cut(s) | 295 |
| SatI | GCNGC | 8 cut(s) | 22, 33, 49, 101, 132, 135, 146, 164 |
| Sau3AI | GATC | 3 cut(s) | 193, 295, 427 |
| SchI | GAGTC | 1 cut(s) | 192 |
| ScrFI | CCNGG | 1 cut(s) | 293 |
| SetI | ASST | 7 cut(s) | 67, 105, 130, 143, 252, 289, 319 |
| SfaNI | GCATC | 2 cut(s) | 336, 388 |
| SfcI | CTRYAG | 3 cut(s) | 19, 30, 46 |
| SphI | GCATGC | 1 cut(s) | 329 |
| SsiI | CCGC | 1 cut(s) | 53 |
| SspI | AATATT | 1 cut(s) | 267 |
| SspMI | CTAG | 1 cut(s) | 422 |
| StyD4I | CCNGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 2 cut(s) | 72, 222 |
| TaqI | TCGA | 2 cut(s) | 181, 196 |
| TfiI | GAWTC | 1 cut(s) | 449 |
| TscAI | CASTG | 1 cut(s) | 159 |
| TseI | GCWGC | 8 cut(s) | 21, 32, 48, 100, 131, 134, 145, 163 |
| TspGWI | ACGGA | 1 cut(s) | 262 |
| TspRI | CASTG | 1 cut(s) | 159 |
| XceI | RCATGY | 2 cut(s) | 100, 329 |
| XspI | CTAG | 1 cut(s) | 422 |