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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 84 |
| AccB1I | GGYRCC | 1 cut(s) | 195 |
| AccIII | TCCGGA | 1 cut(s) | 216 |
| AciI | CCGC | 4 cut(s) | 128, 715, 736, 798 |
| AclWI | GGATC | 4 cut(s) | 96, 521, 843, 916 |
| AcoI | YGGCCR | 2 cut(s) | 752, 769 |
| AcsI | RAATTY | 1 cut(s) | 398 |
| AcvI | CACGTG | 1 cut(s) | 758 |
| AcyI | GRCGYC | 2 cut(s) | 81, 196 |
| AdeI | CACNNNGTG | 1 cut(s) | 854 |
| AflIII | ACRYGT | 1 cut(s) | 697 |
| AgeI | ACCGGT | 1 cut(s) | 598 |
| AgsI | TTSAA | 9 cut(s) | 48, 138, 269, 290, 310, 346, 397, 497, 594 |
| AjiI | CACGTC | 1 cut(s) | 806 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 261, 293 |
| AluBI | AGCT | 5 cut(s) | 415, 532, 875, 952, 956 |
| AluI | AGCT | 5 cut(s) | 415, 532, 875, 952, 956 |
| Alw21I | GWGCWC | 1 cut(s) | 417 |
| Alw26I | GTCTC | 1 cut(s) | 864 |
| AlwI | GGATC | 4 cut(s) | 96, 521, 843, 916 |
| Aor13HI | TCCGGA | 1 cut(s) | 216 |
| AoxI | GGCC | 4 cut(s) | 372, 752, 769, 996 |
| ApeKI | GCWGC | 2 cut(s) | 815, 956 |
| ApoI | RAATTY | 1 cut(s) | 398 |
| AsiGI | ACCGGT | 1 cut(s) | 598 |
| AspA2I | CCTAGG | 2 cut(s) | 245, 830 |
| AspLEI | GCGC | 3 cut(s) | 198, 641, 797 |
| AspS9I | GGNCC | 2 cut(s) | 373, 704 |
| AsuHPI | GGTGA | 3 cut(s) | 83, 85, 325 |
| AsuNHI | GCTAGC | 1 cut(s) | 952 |
| AvaII | GGWCC | 1 cut(s) | 704 |
| AvrII | CCTAGG | 2 cut(s) | 245, 830 |
| BalI | TGGCCA | 1 cut(s) | 771 |
| BanI | GGYRCC | 1 cut(s) | 195 |
| BanII | GRGCYC | 1 cut(s) | 417 |
| BauI | CACGAG | 2 cut(s) | 517, 575 |
| BbrPI | CACGTG | 1 cut(s) | 758 |
| Bbv12I | GWGCWC | 1 cut(s) | 417 |
| BbvI | GCAGC | 2 cut(s) | 802, 943 |
| BccI | CCATC | 1 cut(s) | 722 |
| BceAI | ACGGC | 1 cut(s) | 767 |
| BcoDI | GTCTC | 1 cut(s) | 864 |
| BfaI | CTAG | 4 cut(s) | 113, 246, 831, 953 |
| BfmI | CTRYAG | 1 cut(s) | 898 |
| BfoI | RGCGCY | 2 cut(s) | 199, 798 |
| BisI | GCNGC | 3 cut(s) | 798, 816, 957 |
| BlnI | CCTAGG | 2 cut(s) | 245, 830 |
| BlsI | GCNGC | 3 cut(s) | 799, 817, 958 |
| Bme18I | GGWCC | 1 cut(s) | 704 |
| BmgBI | CACGTC | 1 cut(s) | 806 |
| BmgT120I | GGNCC | 2 cut(s) | 373, 704 |
| BmiI | GGNNCC | 2 cut(s) | 197, 607 |
| BmsI | GCATC | 2 cut(s) | 390, 736 |
| BmtI | GCTAGC | 1 cut(s) | 956 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 399, 431 |
| BpuEI | CTTGAG | 1 cut(s) | 159 |
| BsaAI | YACGTR | 1 cut(s) | 758 |
| BsaBI | GATNNNNATC | 1 cut(s) | 907 |
| BsaHI | GRCGYC | 2 cut(s) | 81, 196 |
| BsaJI | CCNNGG | 2 cut(s) | 245, 830 |
| BsaWI | WCCGGW | 2 cut(s) | 216, 598 |
| Bse118I | RCCGGY | 1 cut(s) | 598 |
| Bse8I | GATNNNNATC | 1 cut(s) | 907 |
| BseAI | TCCGGA | 1 cut(s) | 216 |
| BseDI | CCNNGG | 2 cut(s) | 245, 830 |
| BseJI | GATNNNNATC | 1 cut(s) | 907 |
| BseMII | CTCAG | 2 cut(s) | 348, 546 |
| BseXI | GCAGC | 2 cut(s) | 802, 943 |
| BsgI | GTGCAG | 1 cut(s) | 942 |
| Bsh1285I | CGRYCG | 1 cut(s) | 128 |
| BshFI | GGCC | 4 cut(s) | 374, 754, 771, 998 |
| BshNI | GGYRCC | 1 cut(s) | 195 |
| BshTI | ACCGGT | 1 cut(s) | 598 |
| BsiEI | CGRYCG | 1 cut(s) | 128 |
| BsiHKAI | GWGCWC | 1 cut(s) | 417 |
| BsiSI | CCGG | 4 cut(s) | 131, 217, 599, 801 |
| BsmAI | GTCTC | 1 cut(s) | 864 |
| BsmBI | CGTCTC | 1 cut(s) | 864 |
| BsmI | GAATGC | 2 cut(s) | 13, 175 |
| BsnI | GGCC | 4 cut(s) | 374, 754, 771, 998 |
| Bsp1286I | GDGCHC | 1 cut(s) | 417 |
| Bsp13I | TCCGGA | 1 cut(s) | 216 |
| Bsp143I | GATC | 5 cut(s) | 88, 325, 513, 835, 908 |
| BspACI | CCGC | 4 cut(s) | 128, 715, 736, 798 |
| BspANI | GGCC | 4 cut(s) | 374, 754, 771, 998 |
| BspCNI | CTCAG | 2 cut(s) | 349, 547 |
| BspEI | TCCGGA | 1 cut(s) | 216 |
| BspHI | TCATGA | 1 cut(s) | 619 |
| BspLI | GGNNCC | 2 cut(s) | 197, 607 |
| BspOI | GCTAGC | 1 cut(s) | 956 |
| BspPI | GGATC | 4 cut(s) | 96, 521, 843, 916 |
| BspQI | GCTCTTC | 2 cut(s) | 264, 405 |
| BspT107I | GGYRCC | 1 cut(s) | 195 |
| BsrFI | RCCGGY | 1 cut(s) | 598 |
| BssAI | RCCGGY | 1 cut(s) | 598 |
| BssECI | CCNNGG | 2 cut(s) | 245, 830 |
| BssMI | GATC | 5 cut(s) | 88, 325, 513, 835, 908 |
| BssNI | GRCGYC | 2 cut(s) | 81, 196 |
| BssSI | CACGAG | 2 cut(s) | 517, 575 |
| BssT1I | CCWWGG | 2 cut(s) | 245, 830 |
| Bst2BI | CACGAG | 2 cut(s) | 517, 575 |
| Bst6I | CTCTTC | 2 cut(s) | 264, 405 |
| BstACI | GRCGYC | 2 cut(s) | 81, 196 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 854 |
| BstBAI | YACGTR | 1 cut(s) | 758 |
| BstC8I | GCNNGC | 1 cut(s) | 954 |
| BstDEI | CTNAG | 2 cut(s) | 357, 555 |
| BstH2I | RGCGCY | 2 cut(s) | 199, 798 |
| BstHHI | GCGC | 3 cut(s) | 198, 641, 797 |
| BstKTI | GATC | 5 cut(s) | 91, 328, 516, 838, 911 |
| BstMAI | GTCTC | 1 cut(s) | 864 |
| BstMBI | GATC | 5 cut(s) | 88, 325, 513, 835, 908 |
| BstMCI | CGRYCG | 1 cut(s) | 128 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 271, 490, 768, 854 |
| BstSFI | CTRYAG | 1 cut(s) | 898 |
| BstV1I | GCAGC | 2 cut(s) | 802, 943 |
| BstX2I | RGATCY | 1 cut(s) | 908 |
| BstYI | RGATCY | 1 cut(s) | 908 |
| BsuRI | GGCC | 4 cut(s) | 374, 754, 771, 998 |
| BtrI | CACGTC | 1 cut(s) | 806 |
| BtsI | GCAGTG | 1 cut(s) | 96 |
| BtsIMutI | CAGTG | 1 cut(s) | 96 |
| Cac8I | GCNNGC | 1 cut(s) | 954 |
| CciI | TCATGA | 1 cut(s) | 619 |
| CfoI | GCGC | 3 cut(s) | 198, 641, 797 |
| Cfr10I | RCCGGY | 1 cut(s) | 598 |
| Cfr13I | GGNCC | 2 cut(s) | 373, 704 |
| CseI | GACGC | 1 cut(s) | 846 |
| CspAI | ACCGGT | 1 cut(s) | 598 |
| CviAII | CATG | 2 cut(s) | 563, 620 |
| DdeI | CTNAG | 2 cut(s) | 357, 555 |
| DinI | GGCGCC | 1 cut(s) | 197 |
| DpnI | GATC | 5 cut(s) | 90, 327, 515, 837, 910 |
| DpnII | GATC | 5 cut(s) | 88, 325, 513, 835, 908 |
| DraI | TTTAAA | 1 cut(s) | 646 |
| DraIII | CACNNNGTG | 1 cut(s) | 854 |
| EaeI | YGGCCR | 2 cut(s) | 752, 769 |
| Eam1104I | CTCTTC | 2 cut(s) | 264, 405 |
| EarI | CTCTTC | 2 cut(s) | 264, 405 |
| Ecl136II | GAGCTC | 1 cut(s) | 415 |
| Eco130I | CCWWGG | 2 cut(s) | 245, 830 |
| Eco147I | AGGCCT | 1 cut(s) | 998 |
| Eco24I | GRGCYC | 1 cut(s) | 417 |
| Eco32I | GATATC | 1 cut(s) | 62 |
| Eco47I | GGWCC | 1 cut(s) | 704 |
| Eco53kI | GAGCTC | 1 cut(s) | 415 |
| Eco72I | CACGTG | 1 cut(s) | 758 |
| EcoICRI | GAGCTC | 1 cut(s) | 415 |
| EcoO109I | RGGNCCY | 1 cut(s) | 373 |
| EcoRV | GATATC | 1 cut(s) | 62 |
| EcoT14I | CCWWGG | 2 cut(s) | 245, 830 |
| EcoT22I | ATGCAT | 1 cut(s) | 383 |
| EcoT38I | GRGCYC | 1 cut(s) | 417 |
| EgeI | GGCGCC | 1 cut(s) | 197 |
| EheI | GGCGCC | 1 cut(s) | 197 |
| ErhI | CCWWGG | 2 cut(s) | 245, 830 |
| Esp3I | CGTCTC | 1 cut(s) | 864 |
| FaeI | CATG | 2 cut(s) | 566, 623 |
| FatI | CATG | 2 cut(s) | 562, 619 |
| Fnu4HI | GCNGC | 3 cut(s) | 798, 816, 957 |
| FriOI | GRGCYC | 1 cut(s) | 417 |
| Fsp4HI | GCNGC | 3 cut(s) | 798, 816, 957 |
| FspBI | CTAG | 4 cut(s) | 113, 246, 831, 953 |
| GlaI | GCGC | 3 cut(s) | 197, 640, 796 |
| GluI | GCNGC | 3 cut(s) | 798, 816, 957 |
| HaeII | RGCGCY | 2 cut(s) | 199, 798 |
| HaeIII | GGCC | 4 cut(s) | 374, 754, 771, 998 |
| HapII | CCGG | 4 cut(s) | 131, 217, 599, 801 |
| HgaI | GACGC | 1 cut(s) | 846 |
| HhaI | GCGC | 3 cut(s) | 198, 641, 797 |
| Hin1I | GRCGYC | 2 cut(s) | 81, 196 |
| Hin1II | CATG | 2 cut(s) | 566, 623 |
| Hin6I | GCGC | 3 cut(s) | 196, 639, 795 |
| HinP1I | GCGC | 3 cut(s) | 196, 639, 795 |
| HinfI | GANTC | 5 cut(s) | 44, 109, 121, 134, 824 |
| HpaII | CCGG | 4 cut(s) | 131, 217, 599, 801 |
| HphI | GGTGA | 3 cut(s) | 83, 85, 325 |
| Hpy166II | GTNNAC | 1 cut(s) | 842 |
| Hpy188I | TCNGA | 5 cut(s) | 162, 340, 358, 370, 694 |
| Hpy188III | TCNNGA | 8 cut(s) | 217, 290, 346, 448, 517, 577, 594, 620 |
| Hpy8I | GTNNAC | 1 cut(s) | 842 |
| Hpy99I | CGWCG | 1 cut(s) | 86 |
| HpyAV | CCTTC | 6 cut(s) | 214, 304, 463, 644, 667, 780 |
| HpyCH4IV | ACGT | 4 cut(s) | 81, 697, 757, 805 |
| HpyCH4V | TGCA | 7 cut(s) | 11, 19, 381, 467, 657, 749, 959 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 271, 490, 768, 854 |
| HpyF3I | CTNAG | 2 cut(s) | 357, 555 |
| HpySE526I | ACGT | 4 cut(s) | 81, 697, 757, 805 |
| Hsp92I | GRCGYC | 2 cut(s) | 81, 196 |
| Hsp92II | CATG | 2 cut(s) | 566, 623 |
| HspAI | GCGC | 3 cut(s) | 196, 639, 795 |
| KasI | GGCGCC | 1 cut(s) | 195 |
| Kpn2I | TCCGGA | 1 cut(s) | 216 |
| Kzo9I | GATC | 5 cut(s) | 88, 325, 513, 835, 908 |
| LguI | GCTCTTC | 2 cut(s) | 264, 405 |
| LmnI | GCTCC | 1 cut(s) | 219 |
| LpnPI | CCDG | 7 cut(s) | 144, 230, 471, 612, 752, 814, 861 |
| Lsp1109I | GCAGC | 2 cut(s) | 802, 943 |
| LweI | GCATC | 2 cut(s) | 390, 736 |
| MaeI | CTAG | 4 cut(s) | 113, 246, 831, 953 |
| MaeII | ACGT | 4 cut(s) | 81, 697, 757, 805 |
| MaeIII | GTNAC | 2 cut(s) | 77, 1006 |
| MalI | GATC | 5 cut(s) | 90, 327, 515, 837, 910 |
| MboI | GATC | 5 cut(s) | 88, 325, 513, 835, 908 |
| MboII | GAAGA | 2 cut(s) | 281, 422 |
| MflI | RGATCY | 1 cut(s) | 908 |
| MhlI | GDGCHC | 1 cut(s) | 417 |
| MlsI | TGGCCA | 1 cut(s) | 771 |
| MluCI | AATT | 8 cut(s) | 38, 65, 364, 398, 432, 589, 628, 863 |
| MluNI | TGGCCA | 1 cut(s) | 771 |
| Mly113I | GGCGCC | 1 cut(s) | 196 |
| MlyI | GAGTC | 1 cut(s) | 818 |
| MmeI | TCCRAC | 3 cut(s) | 37, 185, 583 |
| Mox20I | TGGCCA | 1 cut(s) | 771 |
| Mph1103I | ATGCAT | 1 cut(s) | 383 |
| MroI | TCCGGA | 1 cut(s) | 216 |
| MscI | TGGCCA | 1 cut(s) | 771 |
| MseI | TTAA | 4 cut(s) | 431, 645, 866, 927 |
| MslI | CAYNNNNRTG | 1 cut(s) | 575 |
| Msp20I | TGGCCA | 1 cut(s) | 771 |
| MspI | CCGG | 4 cut(s) | 131, 217, 599, 801 |
| Mva1269I | GAATGC | 2 cut(s) | 13, 175 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 271, 490, 768, 854 |
| NarI | GGCGCC | 1 cut(s) | 196 |
| NdeII | GATC | 5 cut(s) | 88, 325, 513, 835, 908 |
| NheI | GCTAGC | 1 cut(s) | 952 |
| NlaIII | CATG | 2 cut(s) | 566, 623 |
| NlaIV | GGNNCC | 2 cut(s) | 197, 607 |
| NmuCI | GTSAC | 1 cut(s) | 77 |
| NsiI | ATGCAT | 1 cut(s) | 383 |
| PagI | TCATGA | 1 cut(s) | 619 |
| PceI | AGGCCT | 1 cut(s) | 998 |
| PciSI | GCTCTTC | 2 cut(s) | 264, 405 |
| PctI | GAATGC | 2 cut(s) | 13, 175 |
| PfeI | GAWTC | 4 cut(s) | 44, 109, 121, 134 |
| PinAI | ACCGGT | 1 cut(s) | 598 |
| PkrI | GCNGC | 3 cut(s) | 799, 817, 958 |
| PleI | GAGTC | 1 cut(s) | 818 |
| PluTI | GGCGCC | 1 cut(s) | 199 |
| PmaCI | CACGTG | 1 cut(s) | 758 |
| PmlI | CACGTG | 1 cut(s) | 758 |
| PpsI | GAGTC | 1 cut(s) | 818 |
| Ppu21I | YACGTR | 1 cut(s) | 758 |
| Psp124BI | GAGCTC | 1 cut(s) | 417 |
| PspCI | CACGTG | 1 cut(s) | 758 |
| PspN4I | GGNNCC | 2 cut(s) | 197, 607 |
| PspPI | GGNCC | 2 cut(s) | 373, 704 |
| PsuI | RGATCY | 1 cut(s) | 908 |
| RseI | CAYNNNNRTG | 1 cut(s) | 575 |
| SacI | GAGCTC | 1 cut(s) | 417 |
| SapI | GCTCTTC | 2 cut(s) | 264, 405 |
| SaqAI | TTAA | 4 cut(s) | 431, 645, 866, 927 |
| SatI | GCNGC | 3 cut(s) | 798, 816, 957 |
| Sau3AI | GATC | 5 cut(s) | 88, 325, 513, 835, 908 |
| Sau96I | GGNCC | 2 cut(s) | 373, 704 |
| SchI | GAGTC | 1 cut(s) | 818 |
| SduI | GDGCHC | 1 cut(s) | 417 |
| SfaNI | GCATC | 2 cut(s) | 390, 736 |
| SfcI | CTRYAG | 1 cut(s) | 898 |
| SfoI | GGCGCC | 1 cut(s) | 197 |
| SinI | GGWCC | 1 cut(s) | 704 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 575 |
| SmlI | CTYRAG | 1 cut(s) | 174 |
| SmoI | CTYRAG | 1 cut(s) | 174 |
| Sse9I | AATT | 8 cut(s) | 38, 65, 364, 398, 432, 589, 628, 863 |
| SseBI | AGGCCT | 1 cut(s) | 998 |
| SsiI | CCGC | 4 cut(s) | 128, 715, 736, 798 |
| SspDI | GGCGCC | 1 cut(s) | 195 |
| SspI | AATATT | 2 cut(s) | 286, 488 |
| SspMI | CTAG | 4 cut(s) | 113, 246, 831, 953 |
| SstI | GAGCTC | 1 cut(s) | 417 |
| StuI | AGGCCT | 1 cut(s) | 998 |
| StyI | CCWWGG | 2 cut(s) | 245, 830 |
| TaiI | ACGT | 4 cut(s) | 84, 700, 760, 808 |
| TaqI | TCGA | 5 cut(s) | 5, 27, 84, 124, 449 |
| TaqII | GACCGA | 1 cut(s) | 692 |
| TasI | AATT | 8 cut(s) | 38, 65, 364, 398, 432, 589, 628, 863 |
| TauI | GCSGC | 1 cut(s) | 800 |
| TfiI | GAWTC | 4 cut(s) | 44, 109, 121, 134 |
| Tru1I | TTAA | 4 cut(s) | 431, 645, 866, 927 |
| Tru9I | TTAA | 4 cut(s) | 431, 645, 866, 927 |
| TscAI | CASTG | 1 cut(s) | 103 |
| TseFI | GTSAC | 1 cut(s) | 77 |
| TseI | GCWGC | 2 cut(s) | 815, 956 |
| Tsp45I | GTSAC | 1 cut(s) | 77 |
| TspDTI | ATGAA | 2 cut(s) | 515, 608 |
| TspGWI | ACGGA | 1 cut(s) | 526 |
| TspRI | CASTG | 1 cut(s) | 103 |
| VpaK11BI | GGWCC | 1 cut(s) | 704 |
| XapI | RAATTY | 1 cut(s) | 398 |
| XmaJI | CCTAGG | 2 cut(s) | 245, 830 |
| XspI | CTAG | 4 cut(s) | 113, 246, 831, 953 |
| ZraI | GACGTC | 1 cut(s) | 82 |
| Zsp2I | ATGCAT | 1 cut(s) | 383 |