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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 564 |
| AciI | CCGC | 2 cut(s) | 220, 562 |
| AclWI | GGATC | 1 cut(s) | 696 |
| AcoI | YGGCCR | 1 cut(s) | 21 |
| AcsI | RAATTY | 2 cut(s) | 117, 503 |
| AfaI | GTAC | 1 cut(s) | 389 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 755 |
| AgsI | TTSAA | 1 cut(s) | 662 |
| AjiI | CACGTC | 2 cut(s) | 51, 277 |
| AleI | CACNNNNGTG | 1 cut(s) | 527 |
| AluBI | AGCT | 5 cut(s) | 56, 296, 421, 637, 647 |
| AluI | AGCT | 5 cut(s) | 56, 296, 421, 637, 647 |
| Alw21I | GWGCWC | 1 cut(s) | 639 |
| Alw26I | GTCTC | 2 cut(s) | 193, 433 |
| AlwI | GGATC | 1 cut(s) | 696 |
| Ama87I | CYCGRG | 1 cut(s) | 260 |
| AoxI | GGCC | 1 cut(s) | 21 |
| ApeKI | GCWGC | 1 cut(s) | 320 |
| ApoI | RAATTY | 2 cut(s) | 117, 503 |
| AspLEI | GCGC | 1 cut(s) | 762 |
| AspS9I | GGNCC | 1 cut(s) | 37 |
| AsuHPI | GGTGA | 3 cut(s) | 24, 73, 352 |
| AvaI | CYCGRG | 1 cut(s) | 260 |
| AvaII | GGWCC | 1 cut(s) | 37 |
| BaeGI | GKGCMC | 1 cut(s) | 748 |
| BanII | GRGCYC | 1 cut(s) | 639 |
| BbsI | GAAGAC | 2 cut(s) | 414, 551 |
| Bbv12I | GWGCWC | 1 cut(s) | 639 |
| BbvI | GCAGC | 1 cut(s) | 332 |
| BccI | CCATC | 3 cut(s) | 233, 356, 571 |
| BceAI | ACGGC | 1 cut(s) | 36 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 590, 624 |
| BcoDI | GTCTC | 2 cut(s) | 193, 433 |
| BfaI | CTAG | 3 cut(s) | 248, 267, 414 |
| BfmI | CTRYAG | 1 cut(s) | 609 |
| BfoI | RGCGCY | 1 cut(s) | 763 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 329 |
| BisI | GCNGC | 1 cut(s) | 321 |
| BlsI | GCNGC | 1 cut(s) | 322 |
| Bme18I | GGWCC | 1 cut(s) | 37 |
| BmeT110I | CYCGRG | 1 cut(s) | 260 |
| BmgBI | CACGTC | 2 cut(s) | 51, 277 |
| BmgT120I | GGNCC | 1 cut(s) | 37 |
| BmiI | GGNNCC | 1 cut(s) | 39 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BpiI | GAAGAC | 2 cut(s) | 414, 551 |
| BpuEI | CTTGAG | 2 cut(s) | 215, 368 |
| Bsa29I | ATCGAT | 1 cut(s) | 600 |
| BsaI | GGTCTC | 1 cut(s) | 433 |
| BsaWI | WCCGGW | 2 cut(s) | 34, 58 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 40, 70 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 755 |
| BseCI | ATCGAT | 1 cut(s) | 600 |
| BseGI | GGATG | 4 cut(s) | 147, 351, 379, 675 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 755 |
| BseMII | CTCAG | 1 cut(s) | 204 |
| BseSI | GKGCMC | 1 cut(s) | 748 |
| BseXI | GCAGC | 1 cut(s) | 332 |
| Bsh1236I | CGCG | 1 cut(s) | 564 |
| BshFI | GGCC | 1 cut(s) | 23 |
| BshVI | ATCGAT | 1 cut(s) | 600 |
| BsiHKAI | GWGCWC | 1 cut(s) | 639 |
| BsiHKCI | CYCGRG | 1 cut(s) | 260 |
| BsiSI | CCGG | 3 cut(s) | 35, 59, 98 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 755 |
| BsmAI | GTCTC | 2 cut(s) | 193, 433 |
| BsnI | GGCC | 1 cut(s) | 23 |
| Bso31I | GGTCTC | 1 cut(s) | 433 |
| BsoBI | CYCGRG | 1 cut(s) | 260 |
| Bsp1286I | GDGCHC | 2 cut(s) | 639, 748 |
| Bsp143I | GATC | 2 cut(s) | 519, 701 |
| BspACI | CCGC | 2 cut(s) | 220, 562 |
| BspANI | GGCC | 1 cut(s) | 23 |
| BspCNI | CTCAG | 1 cut(s) | 203 |
| BspDI | ATCGAT | 1 cut(s) | 600 |
| BspFNI | CGCG | 1 cut(s) | 564 |
| BspHI | TCATGA | 1 cut(s) | 631 |
| BspLI | GGNNCC | 1 cut(s) | 39 |
| BspMAI | CTGCAG | 1 cut(s) | 613 |
| BspPI | GGATC | 1 cut(s) | 696 |
| BspTNI | GGTCTC | 1 cut(s) | 433 |
| BssMI | GATC | 2 cut(s) | 519, 701 |
| Bst4CI | ACNGT | 3 cut(s) | 187, 203, 286 |
| BstC8I | GCNNGC | 2 cut(s) | 224, 294 |
| BstDEI | CTNAG | 4 cut(s) | 190, 325, 585, 750 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 753 |
| BstF5I | GGATG | 4 cut(s) | 147, 351, 379, 675 |
| BstFNI | CGCG | 1 cut(s) | 564 |
| BstH2I | RGCGCY | 1 cut(s) | 763 |
| BstHHI | GCGC | 1 cut(s) | 762 |
| BstKTI | GATC | 2 cut(s) | 522, 704 |
| BstMAI | GTCTC | 2 cut(s) | 193, 433 |
| BstMBI | GATC | 2 cut(s) | 519, 701 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 53, 317, 329 |
| BstSFI | CTRYAG | 1 cut(s) | 609 |
| BstSLI | GKGCMC | 1 cut(s) | 748 |
| BstUI | CGCG | 1 cut(s) | 564 |
| BstV1I | GCAGC | 1 cut(s) | 332 |
| BstV2I | GAAGAC | 2 cut(s) | 414, 551 |
| BstX2I | RGATCY | 1 cut(s) | 701 |
| BstYI | RGATCY | 1 cut(s) | 701 |
| Bsu15I | ATCGAT | 1 cut(s) | 600 |
| BsuRI | GGCC | 1 cut(s) | 23 |
| BsuTUI | ATCGAT | 1 cut(s) | 600 |
| BtrI | CACGTC | 2 cut(s) | 51, 277 |
| BtsCI | GGATG | 4 cut(s) | 147, 351, 379, 675 |
| BtsI | GCAGTG | 1 cut(s) | 42 |
| BtsIMutI | CAGTG | 1 cut(s) | 42 |
| Cac8I | GCNNGC | 2 cut(s) | 224, 294 |
| CciI | TCATGA | 1 cut(s) | 631 |
| CfoI | GCGC | 1 cut(s) | 762 |
| Cfr13I | GGNCC | 1 cut(s) | 37 |
| ClaI | ATCGAT | 1 cut(s) | 600 |
| Csp6I | GTAC | 1 cut(s) | 388 |
| CviAII | CATG | 2 cut(s) | 632, 668 |
| CviQI | GTAC | 1 cut(s) | 388 |
| DdeI | CTNAG | 4 cut(s) | 190, 325, 585, 750 |
| DpnI | GATC | 2 cut(s) | 521, 703 |
| DpnII | GATC | 2 cut(s) | 519, 701 |
| EaeI | YGGCCR | 1 cut(s) | 21 |
| EciI | GGCGGA | 1 cut(s) | 209 |
| Ecl136II | GAGCTC | 1 cut(s) | 637 |
| Eco24I | GRGCYC | 1 cut(s) | 639 |
| Eco31I | GGTCTC | 1 cut(s) | 433 |
| Eco32I | GATATC | 1 cut(s) | 197 |
| Eco47I | GGWCC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 637 |
| Eco88I | CYCGRG | 1 cut(s) | 260 |
| EcoICRI | GAGCTC | 1 cut(s) | 637 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 753 |
| EcoRV | GATATC | 1 cut(s) | 197 |
| EcoT38I | GRGCYC | 1 cut(s) | 639 |
| FaeI | CATG | 2 cut(s) | 635, 671 |
| FaiI | YATR | 9 cut(s) | 369, 371, 398, 633, 650, 669, 693, 720, 738 |
| FatI | CATG | 2 cut(s) | 631, 667 |
| FauNDI | CATATG | 1 cut(s) | 369 |
| Fnu4HI | GCNGC | 1 cut(s) | 321 |
| FokI | GGATG | 4 cut(s) | 154, 338, 386, 662 |
| FriOI | GRGCYC | 1 cut(s) | 639 |
| Fsp4HI | GCNGC | 1 cut(s) | 321 |
| FspBI | CTAG | 3 cut(s) | 248, 267, 414 |
| GlaI | GCGC | 1 cut(s) | 761 |
| GluI | GCNGC | 1 cut(s) | 321 |
| HaeII | RGCGCY | 1 cut(s) | 763 |
| HaeIII | GGCC | 1 cut(s) | 23 |
| HapII | CCGG | 3 cut(s) | 35, 59, 98 |
| HhaI | GCGC | 1 cut(s) | 762 |
| Hin1II | CATG | 2 cut(s) | 635, 671 |
| Hin6I | GCGC | 1 cut(s) | 760 |
| HinP1I | GCGC | 1 cut(s) | 760 |
| HinfI | GANTC | 9 cut(s) | 243, 256, 361, 377, 410, 547, 597, 618, 728 |
| HpaII | CCGG | 3 cut(s) | 35, 59, 98 |
| HphI | GGTGA | 3 cut(s) | 24, 73, 352 |
| Hpy188III | TCNNGA | 8 cut(s) | 192, 212, 260, 414, 461, 632, 699, 725 |
| HpyAV | CCTTC | 2 cut(s) | 467, 568 |
| HpyCH4III | ACNGT | 3 cut(s) | 187, 203, 286 |
| HpyCH4IV | ACGT | 3 cut(s) | 50, 276, 453 |
| HpyCH4V | TGCA | 2 cut(s) | 572, 611 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 53, 317, 329 |
| HpyF3I | CTNAG | 4 cut(s) | 190, 325, 585, 750 |
| HpySE526I | ACGT | 3 cut(s) | 50, 276, 453 |
| Hsp92II | CATG | 2 cut(s) | 635, 671 |
| HspAI | GCGC | 1 cut(s) | 760 |
| Kzo9I | GATC | 2 cut(s) | 519, 701 |
| LmnI | GCTCC | 2 cut(s) | 61, 644 |
| Lsp1109I | GCAGC | 1 cut(s) | 332 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeI | CTAG | 3 cut(s) | 248, 267, 414 |
| MaeII | ACGT | 3 cut(s) | 50, 276, 453 |
| MaeIII | GTNAC | 3 cut(s) | 61, 146, 604 |
| MalI | GATC | 2 cut(s) | 521, 703 |
| MboI | GATC | 2 cut(s) | 519, 701 |
| MboII | GAAGA | 5 cut(s) | 416, 419, 449, 556, 697 |
| MflI | RGATCY | 1 cut(s) | 701 |
| MhlI | GDGCHC | 2 cut(s) | 639, 748 |
| MluCI | AATT | 5 cut(s) | 117, 158, 503, 694, 733 |
| MlyI | GAGTC | 3 cut(s) | 355, 404, 541 |
| MnlI | CCTC | 4 cut(s) | 26, 132, 322, 749 |
| MseI | TTAA | 3 cut(s) | 489, 497, 540 |
| MslI | CAYNNNNRTG | 4 cut(s) | 356, 372, 527, 680 |
| MspI | CCGG | 3 cut(s) | 35, 59, 98 |
| MvnI | CGCG | 1 cut(s) | 564 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 53, 317, 329 |
| NdeI | CATATG | 1 cut(s) | 369 |
| NdeII | GATC | 2 cut(s) | 519, 701 |
| NlaIII | CATG | 2 cut(s) | 635, 671 |
| NlaIV | GGNNCC | 1 cut(s) | 39 |
| NmuCI | GTSAC | 1 cut(s) | 61 |
| OliI | CACNNNNGTG | 1 cut(s) | 527 |
| PaeR7I | CTCGAG | 1 cut(s) | 260 |
| PagI | TCATGA | 1 cut(s) | 631 |
| PfeI | GAWTC | 6 cut(s) | 243, 256, 377, 597, 618, 728 |
| PflFI | GACNNNGTC | 1 cut(s) | 452 |
| PkrI | GCNGC | 1 cut(s) | 322 |
| PleI | GAGTC | 3 cut(s) | 355, 404, 541 |
| PpsI | GAGTC | 3 cut(s) | 355, 404, 541 |
| Psp124BI | GAGCTC | 1 cut(s) | 639 |
| PspN4I | GGNNCC | 1 cut(s) | 39 |
| PspPI | GGNCC | 1 cut(s) | 37 |
| PstI | CTGCAG | 1 cut(s) | 613 |
| PsuI | RGATCY | 1 cut(s) | 701 |
| PsyI | GACNNNGTC | 1 cut(s) | 452 |
| RsaI | GTAC | 1 cut(s) | 389 |
| RsaNI | GTAC | 1 cut(s) | 388 |
| RseI | CAYNNNNRTG | 4 cut(s) | 356, 372, 527, 680 |
| SacI | GAGCTC | 1 cut(s) | 639 |
| SaqAI | TTAA | 3 cut(s) | 489, 497, 540 |
| SatI | GCNGC | 1 cut(s) | 321 |
| Sau3AI | GATC | 2 cut(s) | 519, 701 |
| Sau96I | GGNCC | 1 cut(s) | 37 |
| SchI | GAGTC | 3 cut(s) | 355, 404, 541 |
| SduI | GDGCHC | 2 cut(s) | 639, 748 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| SfcI | CTRYAG | 1 cut(s) | 609 |
| Sfr274I | CTCGAG | 1 cut(s) | 260 |
| SinI | GGWCC | 1 cut(s) | 37 |
| SlaI | CTCGAG | 1 cut(s) | 260 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 356, 372, 527, 680 |
| SmlI | CTYRAG | 3 cut(s) | 230, 260, 383 |
| SmoI | CTYRAG | 3 cut(s) | 230, 260, 383 |
| Sse9I | AATT | 5 cut(s) | 117, 158, 503, 694, 733 |
| SsiI | CCGC | 2 cut(s) | 220, 562 |
| SspMI | CTAG | 3 cut(s) | 248, 267, 414 |
| SstI | GAGCTC | 1 cut(s) | 639 |
| TaaI | ACNGT | 3 cut(s) | 187, 203, 286 |
| TaiI | ACGT | 3 cut(s) | 53, 279, 456 |
| TaqI | TCGA | 7 cut(s) | 137, 261, 435, 473, 595, 600, 698 |
| TasI | AATT | 5 cut(s) | 117, 158, 503, 694, 733 |
| TfiI | GAWTC | 6 cut(s) | 243, 256, 377, 597, 618, 728 |
| Tru1I | TTAA | 3 cut(s) | 489, 497, 540 |
| Tru9I | TTAA | 3 cut(s) | 489, 497, 540 |
| TscAI | CASTG | 1 cut(s) | 49 |
| TseFI | GTSAC | 1 cut(s) | 61 |
| TseI | GCWGC | 1 cut(s) | 320 |
| Tsp45I | GTSAC | 1 cut(s) | 61 |
| TspDTI | ATGAA | 5 cut(s) | 413, 417, 515, 620, 665 |
| TspGWI | ACGGA | 1 cut(s) | 694 |
| TspRI | CASTG | 1 cut(s) | 49 |
| Tth111I | GACNNNGTC | 1 cut(s) | 452 |
| VpaK11BI | GGWCC | 1 cut(s) | 37 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 753 |
| XapI | RAATTY | 2 cut(s) | 117, 503 |
| XbaI | TCTAGA | 1 cut(s) | 413 |
| XhoI | CTCGAG | 1 cut(s) | 260 |
| XspI | CTAG | 3 cut(s) | 248, 267, 414 |