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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| AccB1I | GGYRCC | 1 cut(s) | 431 |
| AciI | CCGC | 3 cut(s) | 310, 331, 455 |
| AclWI | GGATC | 2 cut(s) | 131, 529 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AcvI | CACGTG | 3 cut(s) | 129, 353, 371 |
| AdeI | CACNNNGTG | 1 cut(s) | 356 |
| AfaI | GTAC | 2 cut(s) | 103, 275 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 257, 258, 319, 372, 401 |
| AflIII | ACRYGT | 2 cut(s) | 350, 368 |
| AgsI | TTSAA | 2 cut(s) | 204, 541 |
| AjnI | CCWGG | 1 cut(s) | 318 |
| AluBI | AGCT | 4 cut(s) | 40, 142, 164, 569 |
| AluI | AGCT | 4 cut(s) | 40, 142, 164, 569 |
| Alw21I | GWGCWC | 1 cut(s) | 466 |
| Alw26I | GTCTC | 1 cut(s) | 283 |
| Alw44I | GTGCAC | 1 cut(s) | 462 |
| AlwI | GGATC | 2 cut(s) | 131, 529 |
| AoxI | GGCC | 1 cut(s) | 206 |
| ApaLI | GTGCAC | 1 cut(s) | 462 |
| ApeKI | GCWGC | 1 cut(s) | 569 |
| AspA2I | CCTAGG | 1 cut(s) | 443 |
| AspLEI | GCGC | 1 cut(s) | 264 |
| AspS9I | GGNCC | 1 cut(s) | 207 |
| AvrII | CCTAGG | 1 cut(s) | 443 |
| BaeGI | GKGCMC | 1 cut(s) | 466 |
| BanI | GGYRCC | 1 cut(s) | 431 |
| BanII | GRGCYC | 1 cut(s) | 302 |
| BauI | CACGAG | 1 cut(s) | 185 |
| BbrPI | CACGTG | 3 cut(s) | 129, 353, 371 |
| Bbv12I | GWGCWC | 1 cut(s) | 466 |
| BbvI | GCAGC | 1 cut(s) | 556 |
| BceAI | ACGGC | 1 cut(s) | 384 |
| BciT130I | CCWGG | 1 cut(s) | 320 |
| BciVI | GTATCC | 2 cut(s) | 340, 401 |
| BcoDI | GTCTC | 1 cut(s) | 283 |
| BfaI | CTAG | 3 cut(s) | 396, 444, 566 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BfuI | GTATCC | 2 cut(s) | 340, 401 |
| BisI | GCNGC | 1 cut(s) | 570 |
| BlnI | CCTAGG | 1 cut(s) | 443 |
| BlsI | GCNGC | 1 cut(s) | 571 |
| Bme1390I | CCNGG | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 1 cut(s) | 207 |
| BmiI | GGNNCC | 2 cut(s) | 433, 450 |
| BmrFI | CCNGG | 1 cut(s) | 320 |
| BoxI | GACNNNNGTC | 1 cut(s) | 417 |
| Bsa29I | ATCGAT | 1 cut(s) | 514 |
| BsaAI | YACGTR | 3 cut(s) | 129, 353, 371 |
| BsaBI | GATNNNNATC | 1 cut(s) | 520 |
| BsaJI | CCNNGG | 2 cut(s) | 400, 443 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 367, 397, 424, 454 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 257, 258, 319, 372, 401 |
| Bse3DI | GCAATG | 1 cut(s) | 551 |
| Bse8I | GATNNNNATC | 1 cut(s) | 520 |
| BseBI | CCWGG | 1 cut(s) | 320 |
| BseCI | ATCGAT | 1 cut(s) | 514 |
| BseDI | CCNNGG | 2 cut(s) | 400, 443 |
| BseJI | GATNNNNATC | 1 cut(s) | 520 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 257, 258, 319, 372, 401 |
| BseMI | GCAATG | 1 cut(s) | 551 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseSI | GKGCMC | 1 cut(s) | 466 |
| BseXI | GCAGC | 1 cut(s) | 556 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BshNI | GGYRCC | 1 cut(s) | 431 |
| BshVI | ATCGAT | 1 cut(s) | 514 |
| BsiHKAI | GWGCWC | 1 cut(s) | 466 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 257, 258, 319, 372, 401 |
| BsmAI | GTCTC | 1 cut(s) | 283 |
| BsmBI | CGTCTC | 1 cut(s) | 283 |
| BsnI | GGCC | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 2 cut(s) | 302, 466 |
| Bsp143I | GATC | 2 cut(s) | 123, 521 |
| BspACI | CCGC | 3 cut(s) | 310, 331, 455 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BspDI | ATCGAT | 1 cut(s) | 514 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 2 cut(s) | 433, 450 |
| BspPI | GGATC | 2 cut(s) | 131, 529 |
| BspT107I | GGYRCC | 1 cut(s) | 431 |
| BsrDI | GCAATG | 1 cut(s) | 551 |
| BssECI | CCNNGG | 2 cut(s) | 400, 443 |
| BssMI | GATC | 2 cut(s) | 123, 521 |
| BssSI | CACGAG | 1 cut(s) | 185 |
| BssT1I | CCWWGG | 1 cut(s) | 443 |
| Bst2BI | CACGAG | 1 cut(s) | 185 |
| Bst2UI | CCWGG | 1 cut(s) | 320 |
| Bst4CI | ACNGT | 1 cut(s) | 101 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 470 |
| BstBAI | YACGTR | 3 cut(s) | 129, 353, 371 |
| BstC8I | GCNNGC | 2 cut(s) | 556, 560 |
| BstDEI | CTNAG | 3 cut(s) | 165, 219, 279 |
| BstDSI | CCRYGG | 1 cut(s) | 400 |
| BstHHI | GCGC | 1 cut(s) | 264 |
| BstKTI | GATC | 2 cut(s) | 126, 524 |
| BstMAI | GTCTC | 1 cut(s) | 283 |
| BstMBI | GATC | 2 cut(s) | 123, 521 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 268, 470, 555 |
| BstNI | CCWGG | 1 cut(s) | 320 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 417 |
| BstSCI | CCNGG | 1 cut(s) | 318 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstSLI | GKGCMC | 1 cut(s) | 466 |
| BstV1I | GCAGC | 1 cut(s) | 556 |
| Bsu15I | ATCGAT | 1 cut(s) | 514 |
| BsuI | GTATCC | 2 cut(s) | 340, 401 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BsuTUI | ATCGAT | 1 cut(s) | 514 |
| BtgI | CCRYGG | 1 cut(s) | 400 |
| Cac8I | GCNNGC | 2 cut(s) | 556, 560 |
| CciI | TCATGA | 1 cut(s) | 229 |
| CfoI | GCGC | 1 cut(s) | 264 |
| Cfr13I | GGNCC | 1 cut(s) | 207 |
| ClaI | ATCGAT | 1 cut(s) | 514 |
| Csp6I | GTAC | 2 cut(s) | 102, 274 |
| CviAII | CATG | 3 cut(s) | 173, 230, 415 |
| CviJI | RGCY | 8 cut(s) | 40, 77, 142, 164, 208, 300, 399, 569 |
| CviKI_1 | RGCY | 8 cut(s) | 40, 77, 142, 164, 208, 300, 399, 569 |
| CviQI | GTAC | 2 cut(s) | 102, 274 |
| DdeI | CTNAG | 3 cut(s) | 165, 219, 279 |
| DpnI | GATC | 2 cut(s) | 125, 523 |
| DpnII | GATC | 2 cut(s) | 123, 521 |
| DraIII | CACNNNGTG | 1 cut(s) | 356 |
| Eco130I | CCWWGG | 1 cut(s) | 443 |
| Eco24I | GRGCYC | 1 cut(s) | 302 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| Eco72I | CACGTG | 3 cut(s) | 129, 353, 371 |
| EcoRII | CCWGG | 1 cut(s) | 318 |
| EcoT14I | CCWWGG | 1 cut(s) | 443 |
| EcoT38I | GRGCYC | 1 cut(s) | 302 |
| ErhI | CCWWGG | 1 cut(s) | 443 |
| Esp3I | CGTCTC | 1 cut(s) | 283 |
| FaeI | CATG | 3 cut(s) | 176, 233, 418 |
| FatI | CATG | 3 cut(s) | 172, 229, 414 |
| FauI | CCCGC | 1 cut(s) | 462 |
| Fnu4HI | GCNGC | 1 cut(s) | 570 |
| FriOI | GRGCYC | 1 cut(s) | 302 |
| Fsp4HI | GCNGC | 1 cut(s) | 570 |
| FspBI | CTAG | 3 cut(s) | 396, 444, 566 |
| GlaI | GCGC | 1 cut(s) | 263 |
| GluI | GCNGC | 1 cut(s) | 570 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| HhaI | GCGC | 1 cut(s) | 264 |
| Hin1II | CATG | 3 cut(s) | 176, 233, 418 |
| Hin6I | GCGC | 1 cut(s) | 262 |
| HinP1I | GCGC | 1 cut(s) | 262 |
| Hpy166II | GTNNAC | 1 cut(s) | 464 |
| Hpy188III | TCNNGA | 2 cut(s) | 187, 230 |
| Hpy8I | GTNNAC | 1 cut(s) | 464 |
| HpyAV | CCTTC | 2 cut(s) | 73, 317 |
| HpyCH4III | ACNGT | 1 cut(s) | 101 |
| HpyCH4IV | ACGT | 5 cut(s) | 128, 292, 352, 370, 460 |
| HpyCH4V | TGCA | 5 cut(s) | 248, 464, 473, 549, 572 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 268, 470, 555 |
| HpyF3I | CTNAG | 3 cut(s) | 165, 219, 279 |
| HpySE526I | ACGT | 5 cut(s) | 128, 292, 352, 370, 460 |
| Hsp92II | CATG | 3 cut(s) | 176, 233, 418 |
| HspAI | GCGC | 1 cut(s) | 262 |
| Kzo9I | GATC | 2 cut(s) | 123, 521 |
| LmnI | GCTCC | 1 cut(s) | 268 |
| LpnPI | CCDG | 3 cut(s) | 102, 305, 332 |
| Lsp1109I | GCAGC | 1 cut(s) | 556 |
| MaeI | CTAG | 3 cut(s) | 396, 444, 566 |
| MaeII | ACGT | 5 cut(s) | 128, 292, 352, 370, 460 |
| MalI | GATC | 2 cut(s) | 125, 523 |
| MboI | GATC | 2 cut(s) | 123, 521 |
| MfeI | CAATTG | 1 cut(s) | 525 |
| MhlI | GDGCHC | 2 cut(s) | 302, 466 |
| MluCI | AATT | 6 cut(s) | 42, 193, 199, 238, 479, 525 |
| MnlI | CCTC | 6 cut(s) | 183, 226, 251, 371, 450, 482 |
| MseI | TTAA | 1 cut(s) | 482 |
| MslI | CAYNNNNRTG | 2 cut(s) | 185, 516 |
| MspR9I | CCNGG | 1 cut(s) | 320 |
| MunI | CAATTG | 1 cut(s) | 525 |
| MvaI | CCWGG | 1 cut(s) | 320 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 268, 470, 555 |
| NdeII | GATC | 2 cut(s) | 123, 521 |
| NlaIII | CATG | 3 cut(s) | 176, 233, 418 |
| NlaIV | GGNNCC | 2 cut(s) | 433, 450 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PkrI | GCNGC | 1 cut(s) | 571 |
| PmaCI | CACGTG | 3 cut(s) | 129, 353, 371 |
| PmlI | CACGTG | 3 cut(s) | 129, 353, 371 |
| Ppu21I | YACGTR | 3 cut(s) | 129, 353, 371 |
| PshAI | GACNNNNGTC | 1 cut(s) | 417 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| Psp6I | CCWGG | 1 cut(s) | 318 |
| PspCI | CACGTG | 3 cut(s) | 129, 353, 371 |
| PspGI | CCWGG | 1 cut(s) | 318 |
| PspN4I | GGNNCC | 2 cut(s) | 433, 450 |
| PspPI | GGNCC | 1 cut(s) | 207 |
| RsaI | GTAC | 2 cut(s) | 103, 275 |
| RsaNI | GTAC | 2 cut(s) | 102, 274 |
| RseI | CAYNNNNRTG | 2 cut(s) | 185, 516 |
| SaqAI | TTAA | 1 cut(s) | 482 |
| SatI | GCNGC | 1 cut(s) | 570 |
| Sau3AI | GATC | 2 cut(s) | 123, 521 |
| Sau96I | GGNCC | 1 cut(s) | 207 |
| ScrFI | CCNGG | 1 cut(s) | 320 |
| SduI | GDGCHC | 2 cut(s) | 302, 466 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 185, 516 |
| Sse9I | AATT | 6 cut(s) | 42, 193, 199, 238, 479, 525 |
| SsiI | CCGC | 3 cut(s) | 310, 331, 455 |
| SspI | AATATT | 1 cut(s) | 151 |
| SspMI | CTAG | 3 cut(s) | 396, 444, 566 |
| StyD4I | CCNGG | 1 cut(s) | 318 |
| StyI | CCWWGG | 1 cut(s) | 443 |
| TaaI | ACNGT | 1 cut(s) | 101 |
| TaiI | ACGT | 5 cut(s) | 131, 295, 355, 373, 463 |
| TaqI | TCGA | 1 cut(s) | 514 |
| TasI | AATT | 6 cut(s) | 42, 193, 199, 238, 479, 525 |
| Tru1I | TTAA | 1 cut(s) | 482 |
| Tru9I | TTAA | 1 cut(s) | 482 |
| TseI | GCWGC | 1 cut(s) | 569 |
| TspDTI | ATGAA | 2 cut(s) | 125, 218 |
| TspGWI | ACGGA | 1 cut(s) | 136 |
| VneI | GTGCAC | 1 cut(s) | 462 |
| XmaJI | CCTAGG | 1 cut(s) | 443 |
| XspI | CTAG | 3 cut(s) | 396, 444, 566 |