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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AciI | CCGC | 1 cut(s) | 547 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcuI | CTGAAG | 1 cut(s) | 204 |
| AfaI | GTAC | 3 cut(s) | 38, 168, 562 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AluBI | AGCT | 2 cut(s) | 346, 368 |
| AluI | AGCT | 2 cut(s) | 346, 368 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AoxI | GGCC | 1 cut(s) | 601 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 422, 454 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| BauI | CACGAG | 1 cut(s) | 77 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 126, 202 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 1 cut(s) | 408 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 1 cut(s) | 569 |
| BmsI | GCATC | 1 cut(s) | 336 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 595 |
| Bpu10I | CCTNAGC | 1 cut(s) | 486 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 3 cut(s) | 414, 459, 571 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| Bse1I | ACTGG | 1 cut(s) | 612 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseDI | CCNNGG | 3 cut(s) | 414, 459, 571 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BseMII | CTCAG | 1 cut(s) | 674 |
| BseNI | ACTGG | 1 cut(s) | 612 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| BshFI | GGCC | 1 cut(s) | 603 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsnI | GGCC | 1 cut(s) | 603 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspACI | CCGC | 1 cut(s) | 547 |
| BspANI | GGCC | 1 cut(s) | 603 |
| BspCNI | CTCAG | 1 cut(s) | 675 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 1 cut(s) | 569 |
| BsrI | ACTGG | 1 cut(s) | 612 |
| BssECI | CCNNGG | 3 cut(s) | 414, 459, 571 |
| BssMI | GATC | 1 cut(s) | 246 |
| BssSI | CACGAG | 1 cut(s) | 77 |
| BssT1I | CCWWGG | 1 cut(s) | 459 |
| Bst2BI | CACGAG | 1 cut(s) | 77 |
| Bst4CI | ACNGT | 2 cut(s) | 572, 677 |
| Bst6I | CTCTTC | 1 cut(s) | 584 |
| BstDEI | CTNAG | 3 cut(s) | 121, 486, 683 |
| BstDSI | CCRYGG | 2 cut(s) | 414, 571 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BsuRI | GGCC | 1 cut(s) | 603 |
| BtgI | CCRYGG | 2 cut(s) | 414, 571 |
| CciI | TCATGA | 1 cut(s) | 340 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| CseI | GACGC | 1 cut(s) | 477 |
| Csp6I | GTAC | 3 cut(s) | 37, 167, 561 |
| CviAII | CATG | 2 cut(s) | 341, 358 |
| CviJI | RGCY | 6 cut(s) | 141, 293, 346, 368, 603, 608 |
| CviKI_1 | RGCY | 6 cut(s) | 141, 293, 346, 368, 603, 608 |
| CviQI | GTAC | 3 cut(s) | 37, 167, 561 |
| DdeI | CTNAG | 3 cut(s) | 121, 486, 683 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Eam1104I | CTCTTC | 1 cut(s) | 584 |
| EarI | CTCTTC | 1 cut(s) | 584 |
| Eco130I | CCWWGG | 1 cut(s) | 459 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco57I | CTGAAG | 1 cut(s) | 204 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT14I | CCWWGG | 1 cut(s) | 459 |
| ErhI | CCWWGG | 1 cut(s) | 459 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 2 cut(s) | 344, 361 |
| FatI | CATG | 2 cut(s) | 340, 357 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| FspBI | CTAG | 1 cut(s) | 408 |
| GluI | GCNGC | 1 cut(s) | 83 |
| GsuI | CTGGAG | 1 cut(s) | 595 |
| HaeIII | GGCC | 1 cut(s) | 603 |
| HgaI | GACGC | 1 cut(s) | 477 |
| Hin1II | CATG | 2 cut(s) | 344, 361 |
| HinfI | GANTC | 5 cut(s) | 20, 104, 256, 437, 636 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 563 |
| Hpy188I | TCNGA | 7 cut(s) | 184, 635, 641, 655, 684, 694, 722 |
| Hpy188III | TCNNGA | 6 cut(s) | 116, 250, 341, 408, 434, 504 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 563 |
| HpyAV | CCTTC | 3 cut(s) | 119, 277, 533 |
| HpyCH4III | ACNGT | 2 cut(s) | 572, 677 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 363, 508 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF3I | CTNAG | 3 cut(s) | 121, 486, 683 |
| HpySE526I | ACGT | 3 cut(s) | 96, 363, 508 |
| Hsp92II | CATG | 2 cut(s) | 344, 361 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LmnI | GCTCC | 2 cut(s) | 30, 475 |
| LpnPI | CCDG | 5 cut(s) | 129, 447, 489, 498, 625 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 1 cut(s) | 336 |
| MaeI | CTAG | 1 cut(s) | 408 |
| MaeII | ACGT | 3 cut(s) | 96, 363, 508 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 5 cut(s) | 62, 104, 265, 406, 601 |
| MluCI | AATT | 7 cut(s) | 154, 178, 212, 348, 442, 499, 628 |
| MlyI | GAGTC | 3 cut(s) | 14, 250, 446 |
| MnlI | CCTC | 7 cut(s) | 40, 50, 152, 458, 569, 593, 619 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 2 cut(s) | 315, 672 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 236, 389 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 2 cut(s) | 344, 361 |
| NlaIV | GGNNCC | 1 cut(s) | 569 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 104, 636 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PleI | GAGTC | 3 cut(s) | 14, 250, 445 |
| PpsI | GAGTC | 3 cut(s) | 14, 250, 445 |
| PspN4I | GGNNCC | 1 cut(s) | 569 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| RsaI | GTAC | 3 cut(s) | 38, 168, 562 |
| RsaNI | GTAC | 3 cut(s) | 37, 167, 561 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 236, 389 |
| SaqAI | TTAA | 2 cut(s) | 315, 672 |
| SatI | GCNGC | 1 cut(s) | 83 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 3 cut(s) | 14, 250, 446 |
| SetI | ASST | 7 cut(s) | 42, 99, 269, 348, 366, 370, 511 |
| SfaNI | GCATC | 1 cut(s) | 336 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 236, 389 |
| Sse9I | AATT | 7 cut(s) | 154, 178, 212, 348, 442, 499, 628 |
| SsiI | CCGC | 1 cut(s) | 547 |
| SspI | AATATT | 1 cut(s) | 710 |
| SspMI | CTAG | 1 cut(s) | 408 |
| StyI | CCWWGG | 1 cut(s) | 459 |
| TaaI | ACNGT | 2 cut(s) | 572, 677 |
| TaiI | ACGT | 3 cut(s) | 99, 366, 511 |
| TaqI | TCGA | 1 cut(s) | 249 |
| TasI | AATT | 7 cut(s) | 154, 178, 212, 348, 442, 499, 628 |
| TatI | WGTACW | 1 cut(s) | 166 |
| TfiI | GAWTC | 2 cut(s) | 104, 636 |
| Tru1I | TTAA | 2 cut(s) | 315, 672 |
| Tru9I | TTAA | 2 cut(s) | 315, 672 |
| TseI | GCWGC | 1 cut(s) | 82 |
| TspDTI | ATGAA | 3 cut(s) | 29, 329, 374 |
| TspGWI | ACGGA | 2 cut(s) | 89, 580 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 407 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 408 |