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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 321 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 206, 657 |
| Acc36I | ACCTGC | 1 cut(s) | 36 |
| AccB1I | GGYRCC | 3 cut(s) | 497, 811, 1055 |
| AccII | CGCG | 1 cut(s) | 801 |
| AccIII | TCCGGA | 1 cut(s) | 577 |
| AciI | CCGC | 3 cut(s) | 71, 289, 747 |
| AcoI | YGGCCR | 5 cut(s) | 88, 109, 133, 243, 364 |
| AcuI | CTGAAG | 1 cut(s) | 148 |
| AcyI | GRCGYC | 3 cut(s) | 498, 812, 1056 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 97, 608, 679, 780 |
| AflIII | ACRYGT | 1 cut(s) | 727 |
| AgsI | TTSAA | 4 cut(s) | 304, 438, 795, 1091 |
| AjiI | CACGTC | 2 cut(s) | 16, 35 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 775, 807 |
| AluBI | AGCT | 4 cut(s) | 21, 332, 490, 512 |
| AluI | AGCT | 4 cut(s) | 21, 332, 490, 512 |
| Alw21I | GWGCWC | 2 cut(s) | 492, 709 |
| Alw26I | GTCTC | 2 cut(s) | 351, 424 |
| Alw44I | GTGCAC | 1 cut(s) | 705 |
| Aor13HI | TCCGGA | 1 cut(s) | 577 |
| AoxI | GGCC | 6 cut(s) | 88, 109, 133, 243, 364, 863 |
| ApaLI | GTGCAC | 1 cut(s) | 705 |
| ApeKI | GCWGC | 1 cut(s) | 1070 |
| AspA2I | CCTAGG | 1 cut(s) | 998 |
| AspLEI | GCGC | 5 cut(s) | 500, 803, 814, 1010, 1058 |
| AspS9I | GGNCC | 2 cut(s) | 659, 863 |
| AsuC2I | CCSGG | 1 cut(s) | 46 |
| AsuHPI | GGTGA | 3 cut(s) | 88, 1061, 1076 |
| AsuNHI | GCTAGC | 1 cut(s) | 1004 |
| AvaII | GGWCC | 1 cut(s) | 659 |
| AvrII | CCTAGG | 1 cut(s) | 998 |
| AxyI | CCTNAGG | 1 cut(s) | 1060 |
| BaeGI | GKGCMC | 3 cut(s) | 601, 709, 977 |
| BalI | TGGCCA | 2 cut(s) | 135, 366 |
| BanI | GGYRCC | 3 cut(s) | 497, 811, 1055 |
| BanII | GRGCYC | 1 cut(s) | 492 |
| BbsI | GAAGAC | 1 cut(s) | 404 |
| Bbv12I | GWGCWC | 2 cut(s) | 492, 709 |
| BbvI | GCAGC | 1 cut(s) | 1057 |
| BccI | CCATC | 5 cut(s) | 270, 952, 964, 1028, 1046 |
| BcnI | CCSGG | 1 cut(s) | 46 |
| BcoDI | GTCTC | 2 cut(s) | 351, 424 |
| BfaI | CTAG | 3 cut(s) | 552, 999, 1005 |
| BfmI | CTRYAG | 1 cut(s) | 184 |
| BfoI | RGCGCY | 3 cut(s) | 501, 815, 1059 |
| BfuAI | ACCTGC | 1 cut(s) | 36 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 809 |
| BisI | GCNGC | 1 cut(s) | 1071 |
| BlnI | CCTAGG | 1 cut(s) | 998 |
| BlsI | GCNGC | 1 cut(s) | 1072 |
| Bme1390I | CCNGG | 1 cut(s) | 46 |
| Bme18I | GGWCC | 1 cut(s) | 659 |
| BmgBI | CACGTC | 2 cut(s) | 16, 35 |
| BmgT120I | GGNCC | 2 cut(s) | 659, 863 |
| BmiI | GGNNCC | 6 cut(s) | 499, 713, 751, 813, 828, 1057 |
| BmrFI | CCNGG | 1 cut(s) | 46 |
| BmsI | GCATC | 2 cut(s) | 1051, 1057 |
| BmtI | GCTAGC | 1 cut(s) | 1008 |
| BpiI | GAAGAC | 1 cut(s) | 404 |
| BpuMI | CCSGG | 1 cut(s) | 46 |
| BsaBI | GATNNNNATC | 3 cut(s) | 389, 846, 962 |
| BsaHI | GRCGYC | 3 cut(s) | 498, 812, 1056 |
| BsaJI | CCNNGG | 5 cut(s) | 44, 558, 715, 760, 998 |
| BsaWI | WCCGGW | 3 cut(s) | 154, 175, 577 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 5, 35 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 97, 608, 679, 780 |
| Bse118I | RCCGGY | 1 cut(s) | 73 |
| Bse21I | CCTNAGG | 1 cut(s) | 1060 |
| Bse8I | GATNNNNATC | 3 cut(s) | 389, 846, 962 |
| BseAI | TCCGGA | 1 cut(s) | 577 |
| BseDI | CCNNGG | 5 cut(s) | 44, 558, 715, 760, 998 |
| BseGI | GGATG | 1 cut(s) | 1039 |
| BseJI | GATNNNNATC | 3 cut(s) | 389, 846, 962 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 97, 608, 679, 780 |
| BseMII | CTCAG | 2 cut(s) | 996, 1074 |
| BseSI | GKGCMC | 3 cut(s) | 601, 709, 977 |
| BseXI | GCAGC | 1 cut(s) | 1057 |
| BsgI | GTGCAG | 1 cut(s) | 408 |
| Bsh1236I | CGCG | 1 cut(s) | 801 |
| Bsh1285I | CGRYCG | 1 cut(s) | 71 |
| BshFI | GGCC | 6 cut(s) | 90, 111, 135, 245, 366, 865 |
| BshNI | GGYRCC | 3 cut(s) | 497, 811, 1055 |
| BsiEI | CGRYCG | 1 cut(s) | 71 |
| BsiHKAI | GWGCWC | 2 cut(s) | 492, 709 |
| BsiSI | CCGG | 9 cut(s) | 46, 74, 87, 98, 155, 176, 228, 242, 578 |
| BslFI | GGGAC | 2 cut(s) | 653, 998 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 97, 608, 679, 780 |
| BsmAI | GTCTC | 2 cut(s) | 351, 424 |
| BsmBI | CGTCTC | 1 cut(s) | 424 |
| BsmFI | GGGAC | 2 cut(s) | 653, 998 |
| BsnI | GGCC | 6 cut(s) | 90, 111, 135, 245, 366, 865 |
| Bsp1286I | GDGCHC | 4 cut(s) | 492, 601, 709, 977 |
| Bsp13I | TCCGGA | 1 cut(s) | 577 |
| Bsp143I | GATC | 5 cut(s) | 351, 390, 818, 951, 963 |
| Bsp19I | CCATGG | 1 cut(s) | 760 |
| BspACI | CCGC | 3 cut(s) | 71, 289, 747 |
| BspANI | GGCC | 6 cut(s) | 90, 111, 135, 245, 366, 865 |
| BspCNI | CTCAG | 2 cut(s) | 995, 1073 |
| BspEI | TCCGGA | 1 cut(s) | 577 |
| BspFNI | CGCG | 1 cut(s) | 801 |
| BspHI | TCATGA | 1 cut(s) | 484 |
| BspLI | GGNNCC | 6 cut(s) | 499, 713, 751, 813, 828, 1057 |
| BspMI | ACCTGC | 1 cut(s) | 36 |
| BspOI | GCTAGC | 1 cut(s) | 1008 |
| BspT107I | GGYRCC | 3 cut(s) | 497, 811, 1055 |
| BsrFI | RCCGGY | 1 cut(s) | 73 |
| BssAI | RCCGGY | 1 cut(s) | 73 |
| BssECI | CCNNGG | 5 cut(s) | 44, 558, 715, 760, 998 |
| BssMI | GATC | 5 cut(s) | 351, 390, 818, 951, 963 |
| BssNI | GRCGYC | 3 cut(s) | 498, 812, 1056 |
| BssT1I | CCWWGG | 2 cut(s) | 760, 998 |
| Bst4CI | ACNGT | 3 cut(s) | 55, 62, 716 |
| Bst6I | CTCTTC | 1 cut(s) | 728 |
| BstACI | GRCGYC | 3 cut(s) | 498, 812, 1056 |
| BstC8I | GCNNGC | 4 cut(s) | 10, 705, 1006, 1040 |
| BstDEI | CTNAG | 4 cut(s) | 567, 630, 982, 1060 |
| BstDSI | CCRYGG | 3 cut(s) | 558, 715, 760 |
| BstF5I | GGATG | 1 cut(s) | 1039 |
| BstFNI | CGCG | 1 cut(s) | 801 |
| BstH2I | RGCGCY | 3 cut(s) | 501, 815, 1059 |
| BstHHI | GCGC | 5 cut(s) | 500, 803, 814, 1010, 1058 |
| BstKTI | GATC | 5 cut(s) | 354, 393, 821, 954, 966 |
| BstMAI | GTCTC | 2 cut(s) | 351, 424 |
| BstMBI | GATC | 5 cut(s) | 351, 390, 818, 951, 963 |
| BstMCI | CGRYCG | 1 cut(s) | 71 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 18, 37, 809 |
| BstNSI | RCATGY | 1 cut(s) | 875 |
| BstSCI | CCNGG | 1 cut(s) | 44 |
| BstSFI | CTRYAG | 1 cut(s) | 184 |
| BstSLI | GKGCMC | 3 cut(s) | 601, 709, 977 |
| BstUI | CGCG | 1 cut(s) | 801 |
| BstV1I | GCAGC | 1 cut(s) | 1057 |
| BstV2I | GAAGAC | 1 cut(s) | 404 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 253 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1060 |
| BsuRI | GGCC | 6 cut(s) | 90, 111, 135, 245, 366, 865 |
| BtgI | CCRYGG | 3 cut(s) | 558, 715, 760 |
| BtgZI | GCGATG | 1 cut(s) | 289 |
| BtrI | CACGTC | 2 cut(s) | 16, 35 |
| BtsCI | GGATG | 1 cut(s) | 1039 |
| BtsI | GCAGTG | 1 cut(s) | 975 |
| BtsIMutI | CAGTG | 2 cut(s) | 425, 975 |
| BveI | ACCTGC | 1 cut(s) | 36 |
| Cac8I | GCNNGC | 4 cut(s) | 10, 705, 1006, 1040 |
| CciI | TCATGA | 1 cut(s) | 484 |
| CfoI | GCGC | 5 cut(s) | 500, 803, 814, 1010, 1058 |
| Cfr10I | RCCGGY | 1 cut(s) | 73 |
| Cfr13I | GGNCC | 2 cut(s) | 659, 863 |
| CseI | GACGC | 2 cut(s) | 621, 1034 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 112, 147 |
| CviAII | CATG | 7 cut(s) | 485, 502, 761, 872, 939, 1022, 1046 |
| DdeI | CTNAG | 4 cut(s) | 567, 630, 982, 1060 |
| DinI | GGCGCC | 3 cut(s) | 499, 813, 1057 |
| DpnI | GATC | 5 cut(s) | 353, 392, 820, 953, 965 |
| DpnII | GATC | 5 cut(s) | 351, 390, 818, 951, 963 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 206, 657 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 206, 657 |
| EaeI | YGGCCR | 5 cut(s) | 88, 109, 133, 243, 364 |
| Eam1104I | CTCTTC | 1 cut(s) | 728 |
| EarI | CTCTTC | 1 cut(s) | 728 |
| EciI | GGCGGA | 1 cut(s) | 762 |
| Ecl136II | GAGCTC | 1 cut(s) | 490 |
| Eco130I | CCWWGG | 2 cut(s) | 760, 998 |
| Eco24I | GRGCYC | 1 cut(s) | 492 |
| Eco47I | GGWCC | 1 cut(s) | 659 |
| Eco53kI | GAGCTC | 1 cut(s) | 490 |
| Eco57I | CTGAAG | 1 cut(s) | 148 |
| Eco81I | CCTNAGG | 1 cut(s) | 1060 |
| EcoICRI | GAGCTC | 1 cut(s) | 490 |
| EcoT14I | CCWWGG | 2 cut(s) | 760, 998 |
| EcoT38I | GRGCYC | 1 cut(s) | 492 |
| EgeI | GGCGCC | 3 cut(s) | 499, 813, 1057 |
| EheI | GGCGCC | 3 cut(s) | 499, 813, 1057 |
| ErhI | CCWWGG | 2 cut(s) | 760, 998 |
| Esp3I | CGTCTC | 1 cut(s) | 424 |
| FaeI | CATG | 7 cut(s) | 488, 505, 764, 875, 942, 1025, 1049 |
| FaqI | GGGAC | 2 cut(s) | 653, 998 |
| FatI | CATG | 7 cut(s) | 484, 501, 760, 871, 938, 1021, 1045 |
| FauNDI | CATATG | 1 cut(s) | 664 |
| Fnu4HI | GCNGC | 1 cut(s) | 1071 |
| FokI | GGATG | 1 cut(s) | 1046 |
| FriOI | GRGCYC | 1 cut(s) | 492 |
| Fsp4HI | GCNGC | 1 cut(s) | 1071 |
| FspBI | CTAG | 3 cut(s) | 552, 999, 1005 |
| GlaI | GCGC | 5 cut(s) | 499, 802, 813, 1009, 1057 |
| GluI | GCNGC | 1 cut(s) | 1071 |
| HaeII | RGCGCY | 3 cut(s) | 501, 815, 1059 |
| HaeIII | GGCC | 6 cut(s) | 90, 111, 135, 245, 366, 865 |
| HapII | CCGG | 9 cut(s) | 46, 74, 87, 98, 155, 176, 228, 242, 578 |
| HgaI | GACGC | 2 cut(s) | 621, 1034 |
| HhaI | GCGC | 5 cut(s) | 500, 803, 814, 1010, 1058 |
| Hin1I | GRCGYC | 3 cut(s) | 498, 812, 1056 |
| Hin1II | CATG | 7 cut(s) | 488, 505, 764, 875, 942, 1025, 1049 |
| Hin6I | GCGC | 5 cut(s) | 498, 801, 812, 1008, 1056 |
| HinP1I | GCGC | 5 cut(s) | 498, 801, 812, 1008, 1056 |
| HincII | GTYRAC | 4 cut(s) | 51, 58, 65, 725 |
| HindII | GTYRAC | 4 cut(s) | 51, 58, 65, 725 |
| HinfI | GANTC | 2 cut(s) | 400, 581 |
| HpaII | CCGG | 9 cut(s) | 46, 74, 87, 98, 155, 176, 228, 242, 578 |
| HphI | GGTGA | 3 cut(s) | 88, 1061, 1076 |
| Hpy166II | GTNNAC | 6 cut(s) | 51, 58, 65, 707, 725, 988 |
| Hpy188I | TCNGA | 9 cut(s) | 25, 120, 144, 196, 268, 328, 351, 450, 757 |
| Hpy188III | TCNNGA | 8 cut(s) | 259, 394, 485, 578, 648, 916, 955, 967 |
| Hpy8I | GTNNAC | 6 cut(s) | 51, 58, 65, 707, 725, 988 |
| Hpy99I | CGWCG | 1 cut(s) | 200 |
| HpyAV | CCTTC | 2 cut(s) | 421, 677 |
| HpyCH4III | ACNGT | 3 cut(s) | 55, 62, 716 |
| HpyCH4IV | ACGT | 6 cut(s) | 15, 34, 469, 507, 727, 910 |
| HpyCH4V | TGCA | 6 cut(s) | 425, 464, 707, 895, 1042, 1073 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 18, 37, 809 |
| HpyF3I | CTNAG | 4 cut(s) | 567, 630, 982, 1060 |
| HpySE526I | ACGT | 6 cut(s) | 15, 34, 469, 507, 727, 910 |
| Hsp92I | GRCGYC | 3 cut(s) | 498, 812, 1056 |
| Hsp92II | CATG | 7 cut(s) | 488, 505, 764, 875, 942, 1025, 1049 |
| HspAI | GCGC | 5 cut(s) | 498, 801, 812, 1008, 1056 |
| KasI | GGCGCC | 3 cut(s) | 497, 811, 1055 |
| Kpn2I | TCCGGA | 1 cut(s) | 577 |
| Kzo9I | GATC | 5 cut(s) | 351, 390, 818, 951, 963 |
| LmnI | GCTCC | 3 cut(s) | 26, 749, 826 |
| Lsp1109I | GCAGC | 1 cut(s) | 1057 |
| LweI | GCATC | 2 cut(s) | 1051, 1057 |
| MaeI | CTAG | 3 cut(s) | 552, 999, 1005 |
| MaeII | ACGT | 6 cut(s) | 15, 34, 469, 507, 727, 910 |
| MaeIII | GTNAC | 3 cut(s) | 76, 167, 767 |
| MalI | GATC | 5 cut(s) | 353, 392, 820, 953, 965 |
| MboI | GATC | 5 cut(s) | 351, 390, 818, 951, 963 |
| MboII | GAAGA | 5 cut(s) | 154, 409, 550, 745, 961 |
| MhlI | GDGCHC | 4 cut(s) | 492, 601, 709, 977 |
| MlsI | TGGCCA | 2 cut(s) | 135, 366 |
| MluCI | AATT | 5 cut(s) | 432, 442, 643, 688, 933 |
| MluNI | TGGCCA | 2 cut(s) | 135, 366 |
| Mly113I | GGCGCC | 3 cut(s) | 498, 812, 1056 |
| MlyI | GAGTC | 2 cut(s) | 394, 590 |
| MmeI | TCCRAC | 4 cut(s) | 48, 143, 219, 780 |
| Mox20I | TGGCCA | 2 cut(s) | 135, 366 |
| MroI | TCCGGA | 1 cut(s) | 577 |
| MscI | TGGCCA | 2 cut(s) | 135, 366 |
| MslI | CAYNNNNRTG | 4 cut(s) | 594, 840, 1047, 1050 |
| Msp20I | TGGCCA | 2 cut(s) | 135, 366 |
| MspI | CCGG | 9 cut(s) | 46, 74, 87, 98, 155, 176, 228, 242, 578 |
| MspR9I | CCNGG | 1 cut(s) | 46 |
| MvnI | CGCG | 1 cut(s) | 801 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 18, 37, 809 |
| NarI | GGCGCC | 3 cut(s) | 498, 812, 1056 |
| NciI | CCSGG | 1 cut(s) | 46 |
| NcoI | CCATGG | 1 cut(s) | 760 |
| NdeI | CATATG | 1 cut(s) | 664 |
| NdeII | GATC | 5 cut(s) | 351, 390, 818, 951, 963 |
| NheI | GCTAGC | 1 cut(s) | 1004 |
| NlaIII | CATG | 7 cut(s) | 488, 505, 764, 875, 942, 1025, 1049 |
| NlaIV | GGNNCC | 6 cut(s) | 499, 713, 751, 813, 828, 1057 |
| NmeAIII | GCCGAG | 1 cut(s) | 719 |
| NmuCI | GTSAC | 1 cut(s) | 76 |
| NspI | RCATGY | 1 cut(s) | 875 |
| PagI | TCATGA | 1 cut(s) | 484 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 21, 619 |
| PkrI | GCNGC | 1 cut(s) | 1072 |
| PleI | GAGTC | 2 cut(s) | 394, 589 |
| PluTI | GGCGCC | 3 cut(s) | 501, 815, 1059 |
| PpsI | GAGTC | 2 cut(s) | 394, 589 |
| PsiI | TTATAA | 1 cut(s) | 321 |
| Psp124BI | GAGCTC | 1 cut(s) | 492 |
| PspN4I | GGNNCC | 6 cut(s) | 499, 713, 751, 813, 828, 1057 |
| PspPI | GGNCC | 2 cut(s) | 659, 863 |
| RseI | CAYNNNNRTG | 4 cut(s) | 594, 840, 1047, 1050 |
| SacI | GAGCTC | 1 cut(s) | 492 |
| SatI | GCNGC | 1 cut(s) | 1071 |
| Sau3AI | GATC | 5 cut(s) | 351, 390, 818, 951, 963 |
| Sau96I | GGNCC | 2 cut(s) | 659, 863 |
| SchI | GAGTC | 2 cut(s) | 394, 590 |
| ScrFI | CCNGG | 1 cut(s) | 46 |
| SduI | GDGCHC | 4 cut(s) | 492, 601, 709, 977 |
| SfaNI | GCATC | 2 cut(s) | 1051, 1057 |
| SfcI | CTRYAG | 1 cut(s) | 184 |
| SfoI | GGCGCC | 3 cut(s) | 499, 813, 1057 |
| SgrAI | CRCCGGYG | 1 cut(s) | 73 |
| SinI | GGWCC | 1 cut(s) | 659 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 594, 840, 1047, 1050 |
| Sse9I | AATT | 5 cut(s) | 432, 442, 643, 688, 933 |
| SsiI | CCGC | 3 cut(s) | 71, 289, 747 |
| SspDI | GGCGCC | 3 cut(s) | 497, 811, 1055 |
| SspMI | CTAG | 3 cut(s) | 552, 999, 1005 |
| SstI | GAGCTC | 1 cut(s) | 492 |
| StyD4I | CCNGG | 1 cut(s) | 44 |
| StyI | CCWWGG | 2 cut(s) | 760, 998 |
| TaaI | ACNGT | 3 cut(s) | 55, 62, 716 |
| TaiI | ACGT | 6 cut(s) | 18, 37, 472, 510, 730, 913 |
| TaqI | TCGA | 4 cut(s) | 354, 393, 817, 968 |
| TasI | AATT | 5 cut(s) | 432, 442, 643, 688, 933 |
| TscAI | CASTG | 2 cut(s) | 432, 982 |
| TseFI | GTSAC | 1 cut(s) | 76 |
| TseI | GCWGC | 1 cut(s) | 1070 |
| Tsp45I | GTSAC | 1 cut(s) | 76 |
| TspDTI | ATGAA | 2 cut(s) | 473, 518 |
| TspGWI | ACGGA | 1 cut(s) | 724 |
| TspRI | CASTG | 2 cut(s) | 432, 982 |
| VneI | GTGCAC | 1 cut(s) | 705 |
| VpaK11BI | GGWCC | 1 cut(s) | 659 |
| XceI | RCATGY | 1 cut(s) | 875 |
| XmaJI | CCTAGG | 1 cut(s) | 998 |
| XspI | CTAG | 3 cut(s) | 552, 999, 1005 |