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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 89, 496 |
| AclWI | GGATC | 4 cut(s) | 56, 69, 212, 514 |
| AcuI | CTGAAG | 1 cut(s) | 543 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 201 |
| AgsI | TTSAA | 1 cut(s) | 37 |
| AhlI | ACTAGT | 1 cut(s) | 542 |
| AjiI | CACGTC | 1 cut(s) | 563 |
| AluBI | AGCT | 2 cut(s) | 73, 481 |
| AluI | AGCT | 2 cut(s) | 73, 481 |
| Alw21I | GWGCWC | 2 cut(s) | 364, 483 |
| Alw26I | GTCTC | 2 cut(s) | 366, 458 |
| Alw44I | GTGCAC | 1 cut(s) | 360 |
| AlwI | GGATC | 4 cut(s) | 56, 69, 212, 514 |
| ApaLI | GTGCAC | 1 cut(s) | 360 |
| ApeKI | GCWGC | 1 cut(s) | 10 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 598, 630 |
| AsuHPI | GGTGA | 4 cut(s) | 95, 199, 418, 578 |
| BaeGI | GKGCMC | 1 cut(s) | 364 |
| BamHI | GGATCC | 1 cut(s) | 61 |
| BanII | GRGCYC | 2 cut(s) | 404, 483 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 29, 61 |
| Bbv12I | GWGCWC | 2 cut(s) | 364, 483 |
| BccI | CCATC | 1 cut(s) | 33 |
| BcoDI | GTCTC | 2 cut(s) | 366, 458 |
| BcuI | ACTAGT | 1 cut(s) | 542 |
| BfaI | CTAG | 3 cut(s) | 386, 458, 543 |
| BisI | GCNGC | 1 cut(s) | 11 |
| BlsI | GCNGC | 1 cut(s) | 12 |
| BmgBI | CACGTC | 1 cut(s) | 563 |
| BmiI | GGNNCC | 2 cut(s) | 63, 401 |
| BmsI | GCATC | 1 cut(s) | 243 |
| BpuEI | CTTGAG | 2 cut(s) | 89, 278 |
| BsaJI | CCNNGG | 2 cut(s) | 126, 341 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 201 |
| Bse1I | ACTGG | 1 cut(s) | 395 |
| Bse3DI | GCAATG | 1 cut(s) | 515 |
| BseDI | CCNNGG | 2 cut(s) | 126, 341 |
| BseGI | GGATG | 1 cut(s) | 46 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 201 |
| BseMI | GCAATG | 1 cut(s) | 515 |
| BseMII | CTCAG | 1 cut(s) | 257 |
| BseNI | ACTGG | 1 cut(s) | 395 |
| BseSI | GKGCMC | 1 cut(s) | 364 |
| BsgI | GTGCAG | 1 cut(s) | 319 |
| BsiHKAI | GWGCWC | 2 cut(s) | 364, 483 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 201 |
| BsmAI | GTCTC | 2 cut(s) | 366, 458 |
| BsmI | GAATGC | 1 cut(s) | 535 |
| Bsp1286I | GDGCHC | 3 cut(s) | 364, 404, 483 |
| Bsp143I | GATC | 5 cut(s) | 61, 177, 204, 439, 506 |
| Bsp19I | CCATGG | 1 cut(s) | 341 |
| BspACI | CCGC | 2 cut(s) | 89, 496 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspLI | GGNNCC | 2 cut(s) | 63, 401 |
| BspPI | GGATC | 4 cut(s) | 56, 69, 212, 514 |
| BsrDI | GCAATG | 1 cut(s) | 515 |
| BsrI | ACTGG | 1 cut(s) | 395 |
| BssECI | CCNNGG | 2 cut(s) | 126, 341 |
| BssMI | GATC | 5 cut(s) | 61, 177, 204, 439, 506 |
| BssT1I | CCWWGG | 2 cut(s) | 126, 341 |
| Bst4CI | ACNGT | 4 cut(s) | 55, 115, 377, 513 |
| BstC8I | GCNNGC | 2 cut(s) | 350, 354 |
| BstDEI | CTNAG | 1 cut(s) | 243 |
| BstDSI | CCRYGG | 1 cut(s) | 341 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 125 |
| BstF5I | GGATG | 1 cut(s) | 46 |
| BstKTI | GATC | 5 cut(s) | 64, 180, 207, 442, 509 |
| BstMAI | GTCTC | 2 cut(s) | 366, 458 |
| BstMBI | GATC | 5 cut(s) | 61, 177, 204, 439, 506 |
| BstSLI | GKGCMC | 1 cut(s) | 364 |
| BstX2I | RGATCY | 1 cut(s) | 61 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 348 |
| BstYI | RGATCY | 1 cut(s) | 61 |
| BtgI | CCRYGG | 1 cut(s) | 341 |
| BtrI | CACGTC | 1 cut(s) | 563 |
| BtsCI | GGATG | 1 cut(s) | 46 |
| Cac8I | GCNNGC | 2 cut(s) | 350, 354 |
| CseI | GACGC | 2 cut(s) | 2, 143 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 544, 579 |
| CviAII | CATG | 5 cut(s) | 196, 281, 342, 575, 599 |
| CviJI | RGCY | 5 cut(s) | 73, 356, 402, 481, 630 |
| CviKI_1 | RGCY | 5 cut(s) | 73, 356, 402, 481, 630 |
| DdeI | CTNAG | 1 cut(s) | 243 |
| DpnI | GATC | 5 cut(s) | 63, 179, 206, 441, 508 |
| DpnII | GATC | 5 cut(s) | 61, 177, 204, 439, 506 |
| EciI | GGCGGA | 1 cut(s) | 104 |
| Ecl136II | GAGCTC | 1 cut(s) | 481 |
| Eco130I | CCWWGG | 2 cut(s) | 126, 341 |
| Eco24I | GRGCYC | 2 cut(s) | 404, 483 |
| Eco53kI | GAGCTC | 1 cut(s) | 481 |
| Eco57I | CTGAAG | 1 cut(s) | 543 |
| EcoICRI | GAGCTC | 1 cut(s) | 481 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 125 |
| EcoT14I | CCWWGG | 2 cut(s) | 126, 341 |
| EcoT22I | ATGCAT | 2 cut(s) | 297, 576 |
| EcoT38I | GRGCYC | 2 cut(s) | 404, 483 |
| ErhI | CCWWGG | 2 cut(s) | 126, 341 |
| FaeI | CATG | 5 cut(s) | 199, 284, 345, 578, 602 |
| FatI | CATG | 5 cut(s) | 195, 280, 341, 574, 598 |
| Fnu4HI | GCNGC | 1 cut(s) | 11 |
| FokI | GGATG | 1 cut(s) | 53 |
| FriOI | GRGCYC | 2 cut(s) | 404, 483 |
| Fsp4HI | GCNGC | 1 cut(s) | 11 |
| FspBI | CTAG | 3 cut(s) | 386, 458, 543 |
| GluI | GCNGC | 1 cut(s) | 11 |
| HgaI | GACGC | 2 cut(s) | 2, 143 |
| Hin1II | CATG | 5 cut(s) | 199, 284, 345, 578, 602 |
| HinfI | GANTC | 2 cut(s) | 220, 423 |
| HphI | GGTGA | 4 cut(s) | 95, 199, 418, 578 |
| Hpy166II | GTNNAC | 3 cut(s) | 273, 362, 590 |
| Hpy188I | TCNGA | 1 cut(s) | 439 |
| Hpy188III | TCNNGA | 3 cut(s) | 202, 245, 484 |
| Hpy8I | GTNNAC | 3 cut(s) | 273, 362, 590 |
| Hpy99I | CGWCG | 1 cut(s) | 332 |
| HpyAV | CCTTC | 1 cut(s) | 31 |
| HpyCH4III | ACNGT | 4 cut(s) | 55, 115, 377, 513 |
| HpyCH4IV | ACGT | 3 cut(s) | 133, 562, 592 |
| HpyCH4V | TGCA | 6 cut(s) | 160, 295, 336, 362, 382, 574 |
| HpyF3I | CTNAG | 1 cut(s) | 243 |
| HpySE526I | ACGT | 3 cut(s) | 133, 562, 592 |
| Hsp92II | CATG | 5 cut(s) | 199, 284, 345, 578, 602 |
| Kzo9I | GATC | 5 cut(s) | 61, 177, 204, 439, 506 |
| LmnI | GCTCC | 2 cut(s) | 399, 486 |
| LweI | GCATC | 1 cut(s) | 243 |
| MaeI | CTAG | 3 cut(s) | 386, 458, 543 |
| MaeII | ACGT | 3 cut(s) | 133, 562, 592 |
| MalI | GATC | 5 cut(s) | 63, 179, 206, 441, 508 |
| MboI | GATC | 5 cut(s) | 61, 177, 204, 439, 506 |
| MboII | GAAGA | 1 cut(s) | 502 |
| MflI | RGATCY | 1 cut(s) | 61 |
| MhlI | GDGCHC | 3 cut(s) | 364, 404, 483 |
| MluCI | AATT | 2 cut(s) | 169, 187 |
| MnlI | CCTC | 4 cut(s) | 131, 220, 295, 413 |
| Mph1103I | ATGCAT | 2 cut(s) | 297, 576 |
| MseI | TTAA | 2 cut(s) | 50, 366 |
| Mva1269I | GAATGC | 1 cut(s) | 535 |
| NcoI | CCATGG | 1 cut(s) | 341 |
| NdeII | GATC | 5 cut(s) | 61, 177, 204, 439, 506 |
| NlaIII | CATG | 5 cut(s) | 199, 284, 345, 578, 602 |
| NlaIV | GGNNCC | 2 cut(s) | 63, 401 |
| NsiI | ATGCAT | 2 cut(s) | 297, 576 |
| PctI | GAATGC | 1 cut(s) | 535 |
| PfeI | GAWTC | 2 cut(s) | 220, 423 |
| PkrI | GCNGC | 1 cut(s) | 12 |
| Psp124BI | GAGCTC | 1 cut(s) | 483 |
| PspN4I | GGNNCC | 2 cut(s) | 63, 401 |
| PsuI | RGATCY | 1 cut(s) | 61 |
| SacI | GAGCTC | 1 cut(s) | 483 |
| SaqAI | TTAA | 2 cut(s) | 50, 366 |
| SatI | GCNGC | 1 cut(s) | 11 |
| Sau3AI | GATC | 5 cut(s) | 61, 177, 204, 439, 506 |
| SduI | GDGCHC | 3 cut(s) | 364, 404, 483 |
| SfaNI | GCATC | 1 cut(s) | 243 |
| SmlI | CTYRAG | 2 cut(s) | 68, 257 |
| SmoI | CTYRAG | 2 cut(s) | 68, 257 |
| SpeI | ACTAGT | 1 cut(s) | 542 |
| Sse9I | AATT | 2 cut(s) | 169, 187 |
| SsiI | CCGC | 2 cut(s) | 89, 496 |
| SspMI | CTAG | 3 cut(s) | 386, 458, 543 |
| SstI | GAGCTC | 1 cut(s) | 483 |
| StyI | CCWWGG | 2 cut(s) | 126, 341 |
| TaaI | ACNGT | 4 cut(s) | 55, 115, 377, 513 |
| TaiI | ACGT | 3 cut(s) | 136, 565, 595 |
| TaqI | TCGA | 2 cut(s) | 180, 604 |
| TasI | AATT | 2 cut(s) | 169, 187 |
| TfiI | GAWTC | 2 cut(s) | 220, 423 |
| Tru1I | TTAA | 2 cut(s) | 50, 366 |
| Tru9I | TTAA | 2 cut(s) | 50, 366 |
| TseI | GCWGC | 1 cut(s) | 10 |
| TspDTI | ATGAA | 4 cut(s) | 57, 153, 233, 503 |
| VneI | GTGCAC | 1 cut(s) | 360 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 125 |
| XspI | CTAG | 3 cut(s) | 386, 458, 543 |
| Zsp2I | ATGCAT | 2 cut(s) | 297, 576 |