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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 567, 612 |
| Acc65I | GGTACC | 1 cut(s) | 642 |
| AccB1I | GGYRCC | 3 cut(s) | 642, 779, 800 |
| AccBSI | CCGCTC | 1 cut(s) | 640 |
| AciI | CCGC | 5 cut(s) | 640, 679, 824, 883, 904 |
| AclWI | GGATC | 2 cut(s) | 123, 500 |
| AcuI | CTGAAG | 1 cut(s) | 495 |
| AcvI | CACGTG | 2 cut(s) | 722, 740 |
| AcyI | GRCGYC | 2 cut(s) | 172, 780 |
| AdeI | CACNNNGTG | 1 cut(s) | 725 |
| AfaI | GTAC | 5 cut(s) | 129, 311, 472, 618, 644 |
| AfeI | AGCGCT | 2 cut(s) | 240, 251 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 375, 626, 627, 688, 741, 814 |
| AflIII | ACRYGT | 2 cut(s) | 719, 737 |
| AgsI | TTSAA | 5 cut(s) | 78, 289, 296, 325, 573 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 392 |
| AjnI | CCWGG | 2 cut(s) | 99, 687 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 237, 269 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 107, 139 |
| AluBI | AGCT | 4 cut(s) | 229, 353, 409, 533 |
| AluI | AGCT | 4 cut(s) | 229, 353, 409, 533 |
| AlwI | GGATC | 2 cut(s) | 123, 500 |
| Aor51HI | AGCGCT | 2 cut(s) | 240, 251 |
| AoxI | GGCC | 2 cut(s) | 575, 667 |
| ApaI | GGGCCC | 1 cut(s) | 671 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 354 |
| Asp718I | GGTACC | 1 cut(s) | 642 |
| AspLEI | GCGC | 5 cut(s) | 241, 252, 782, 903, 914 |
| AspS9I | GGNCC | 4 cut(s) | 104, 576, 667, 668 |
| AsuC2I | CCSGG | 1 cut(s) | 113 |
| AvaII | GGWCC | 1 cut(s) | 104 |
| AxyI | CCTNAGG | 1 cut(s) | 813 |
| BaeGI | GKGCMC | 2 cut(s) | 633, 671 |
| BanI | GGYRCC | 3 cut(s) | 642, 779, 800 |
| BanII | GRGCYC | 1 cut(s) | 671 |
| BauI | CACGAG | 2 cut(s) | 496, 554 |
| BbrPI | CACGTG | 2 cut(s) | 722, 740 |
| BceAI | ACGGC | 1 cut(s) | 753 |
| BciT130I | CCWGG | 2 cut(s) | 101, 689 |
| BciVI | GTATCC | 2 cut(s) | 709, 770 |
| BcnI | CCSGG | 1 cut(s) | 113 |
| BfaI | CTAG | 3 cut(s) | 242, 765, 833 |
| BfmI | CTRYAG | 1 cut(s) | 528 |
| BfoI | RGCGCY | 3 cut(s) | 242, 253, 783 |
| BfuI | GTATCC | 2 cut(s) | 709, 770 |
| BisI | GCNGC | 1 cut(s) | 904 |
| BlsI | GCNGC | 1 cut(s) | 905 |
| Bme1390I | CCNGG | 3 cut(s) | 101, 113, 689 |
| Bme18I | GGWCC | 1 cut(s) | 104 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 392 |
| BmgT120I | GGNCC | 4 cut(s) | 104, 576, 667, 668 |
| BmiI | GGNNCC | 6 cut(s) | 30, 105, 644, 669, 781, 802 |
| BmrFI | CCNGG | 3 cut(s) | 101, 113, 689 |
| BmrI | ACTGGG | 1 cut(s) | 849 |
| BmsI | GCATC | 1 cut(s) | 156 |
| BmuI | ACTGGG | 1 cut(s) | 849 |
| BpuEI | CTTGAG | 1 cut(s) | 135 |
| BpuMI | CCSGG | 1 cut(s) | 113 |
| BsaAI | YACGTR | 2 cut(s) | 722, 740 |
| BsaHI | GRCGYC | 2 cut(s) | 172, 780 |
| BsaJI | CCNNGG | 2 cut(s) | 100, 783 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 191, 221, 736, 766, 793, 823 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 375, 626, 627, 688, 741, 814 |
| Bse1I | ACTGG | 1 cut(s) | 844 |
| Bse21I | CCTNAGG | 1 cut(s) | 813 |
| Bse3DI | GCAATG | 1 cut(s) | 265 |
| BseBI | CCWGG | 2 cut(s) | 101, 689 |
| BseDI | CCNNGG | 2 cut(s) | 100, 783 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 375, 626, 627, 688, 741, 814 |
| BseMI | GCAATG | 1 cut(s) | 265 |
| BseMII | CTCAG | 2 cut(s) | 205, 525 |
| BseNI | ACTGG | 1 cut(s) | 844 |
| BseRI | GAGGAG | 2 cut(s) | 266, 762 |
| BseSI | GKGCMC | 2 cut(s) | 633, 671 |
| BshFI | GGCC | 2 cut(s) | 577, 669 |
| BshNI | GGYRCC | 3 cut(s) | 642, 779, 800 |
| BsiSI | CCGG | 1 cut(s) | 113 |
| BsiWI | CGTACG | 1 cut(s) | 127 |
| BslFI | GGGAC | 2 cut(s) | 117, 672 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 375, 626, 627, 688, 741, 814 |
| BsmFI | GGGAC | 2 cut(s) | 117, 672 |
| BsmI | GAATGC | 1 cut(s) | 223 |
| BsnI | GGCC | 2 cut(s) | 577, 669 |
| Bsp120I | GGGCCC | 1 cut(s) | 667 |
| Bsp1286I | GDGCHC | 2 cut(s) | 633, 671 |
| Bsp143I | GATC | 3 cut(s) | 115, 210, 492 |
| Bsp19I | CCATGG | 1 cut(s) | 783 |
| BspACI | CCGC | 5 cut(s) | 640, 679, 824, 883, 904 |
| BspANI | GGCC | 2 cut(s) | 577, 669 |
| BspCNI | CTCAG | 2 cut(s) | 204, 526 |
| BspHI | TCATGA | 1 cut(s) | 598 |
| BspLI | GGNNCC | 6 cut(s) | 30, 105, 644, 669, 781, 802 |
| BspPI | GGATC | 2 cut(s) | 123, 500 |
| BspQI | GCTCTTC | 2 cut(s) | 240, 360 |
| BspT107I | GGYRCC | 3 cut(s) | 642, 779, 800 |
| BsrBI | CCGCTC | 1 cut(s) | 640 |
| BsrDI | GCAATG | 1 cut(s) | 265 |
| BsrI | ACTGG | 1 cut(s) | 844 |
| BssECI | CCNNGG | 2 cut(s) | 100, 783 |
| BssMI | GATC | 3 cut(s) | 115, 210, 492 |
| BssNI | GRCGYC | 2 cut(s) | 172, 780 |
| BssSI | CACGAG | 2 cut(s) | 496, 554 |
| BssT1I | CCWWGG | 1 cut(s) | 783 |
| Bst2BI | CACGAG | 2 cut(s) | 496, 554 |
| Bst2UI | CCWGG | 2 cut(s) | 101, 689 |
| Bst4CI | ACNGT | 2 cut(s) | 366, 470 |
| Bst6I | CTCTTC | 2 cut(s) | 240, 360 |
| BstACI | GRCGYC | 2 cut(s) | 172, 780 |
| BstBAI | YACGTR | 2 cut(s) | 722, 740 |
| BstC8I | GCNNGC | 3 cut(s) | 46, 147, 824 |
| BstDEI | CTNAG | 5 cut(s) | 191, 534, 588, 648, 813 |
| BstDSI | CCRYGG | 1 cut(s) | 783 |
| BstH2I | RGCGCY | 3 cut(s) | 242, 253, 783 |
| BstHHI | GCGC | 5 cut(s) | 241, 252, 782, 903, 914 |
| BstKTI | GATC | 3 cut(s) | 118, 213, 495 |
| BstMBI | GATC | 3 cut(s) | 115, 210, 492 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 247, 637, 900, 909 |
| BstNI | CCWGG | 2 cut(s) | 101, 689 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstSCI | CCNGG | 3 cut(s) | 99, 111, 687 |
| BstSFI | CTRYAG | 1 cut(s) | 528 |
| BstSLI | GKGCMC | 2 cut(s) | 633, 671 |
| BstX2I | RGATCY | 1 cut(s) | 115 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 707 |
| BstYI | RGATCY | 1 cut(s) | 115 |
| Bsu36I | CCTNAGG | 1 cut(s) | 813 |
| BsuI | GTATCC | 2 cut(s) | 709, 770 |
| BsuRI | GGCC | 2 cut(s) | 577, 669 |
| BtgI | CCRYGG | 1 cut(s) | 783 |
| Cac8I | GCNNGC | 3 cut(s) | 46, 147, 824 |
| CciI | TCATGA | 1 cut(s) | 598 |
| CfoI | GCGC | 5 cut(s) | 241, 252, 782, 903, 914 |
| Cfr13I | GGNCC | 4 cut(s) | 104, 576, 667, 668 |
| CseI | GACGC | 1 cut(s) | 180 |
| Csp6I | GTAC | 5 cut(s) | 128, 310, 471, 617, 643 |
| CviAII | CATG | 7 cut(s) | 146, 370, 542, 599, 784, 889, 921 |
| CviJI | RGCY | 8 cut(s) | 229, 353, 409, 446, 533, 577, 669, 768 |
| CviKI_1 | RGCY | 8 cut(s) | 229, 353, 409, 446, 533, 577, 669, 768 |
| CviQI | GTAC | 5 cut(s) | 128, 310, 471, 617, 643 |
| DdeI | CTNAG | 5 cut(s) | 191, 534, 588, 648, 813 |
| DinI | GGCGCC | 1 cut(s) | 781 |
| DpnI | GATC | 3 cut(s) | 117, 212, 494 |
| DpnII | GATC | 3 cut(s) | 115, 210, 492 |
| DraIII | CACNNNGTG | 1 cut(s) | 725 |
| DriI | GACNNNNNGTC | 1 cut(s) | 392 |
| Eam1104I | CTCTTC | 2 cut(s) | 240, 360 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 392 |
| EarI | CTCTTC | 2 cut(s) | 240, 360 |
| Eco130I | CCWWGG | 1 cut(s) | 783 |
| Eco24I | GRGCYC | 1 cut(s) | 671 |
| Eco47I | GGWCC | 1 cut(s) | 104 |
| Eco47III | AGCGCT | 2 cut(s) | 240, 251 |
| Eco57I | CTGAAG | 1 cut(s) | 495 |
| Eco72I | CACGTG | 2 cut(s) | 722, 740 |
| Eco81I | CCTNAGG | 1 cut(s) | 813 |
| EcoO109I | RGGNCCY | 1 cut(s) | 104 |
| EcoRII | CCWGG | 2 cut(s) | 99, 687 |
| EcoT14I | CCWWGG | 1 cut(s) | 783 |
| EcoT22I | ATGCAT | 1 cut(s) | 871 |
| EcoT38I | GRGCYC | 1 cut(s) | 671 |
| EgeI | GGCGCC | 1 cut(s) | 781 |
| EheI | GGCGCC | 1 cut(s) | 781 |
| ErhI | CCWWGG | 1 cut(s) | 783 |
| FaeI | CATG | 7 cut(s) | 149, 373, 545, 602, 787, 892, 924 |
| FaqI | GGGAC | 2 cut(s) | 117, 672 |
| FatI | CATG | 7 cut(s) | 145, 369, 541, 598, 783, 888, 920 |
| FauI | CCCGC | 1 cut(s) | 831 |
| FauNDI | CATATG | 1 cut(s) | 177 |
| Fnu4HI | GCNGC | 1 cut(s) | 904 |
| FriOI | GRGCYC | 1 cut(s) | 671 |
| Fsp4HI | GCNGC | 1 cut(s) | 904 |
| FspBI | CTAG | 3 cut(s) | 242, 765, 833 |
| GlaI | GCGC | 5 cut(s) | 240, 251, 781, 902, 913 |
| GluI | GCNGC | 1 cut(s) | 904 |
| HaeII | RGCGCY | 3 cut(s) | 242, 253, 783 |
| HaeIII | GGCC | 2 cut(s) | 577, 669 |
| HapII | CCGG | 1 cut(s) | 113 |
| HgaI | GACGC | 1 cut(s) | 180 |
| HhaI | GCGC | 5 cut(s) | 241, 252, 782, 903, 914 |
| Hin1I | GRCGYC | 2 cut(s) | 172, 780 |
| Hin1II | CATG | 7 cut(s) | 149, 373, 545, 602, 787, 892, 924 |
| Hin6I | GCGC | 5 cut(s) | 239, 250, 780, 901, 912 |
| HinP1I | GCGC | 5 cut(s) | 239, 250, 780, 901, 912 |
| HinfI | GANTC | 3 cut(s) | 67, 269, 847 |
| HpaII | CCGG | 1 cut(s) | 113 |
| Hpy166II | GTNNAC | 2 cut(s) | 66, 386 |
| Hpy188I | TCNGA | 2 cut(s) | 194, 349 |
| Hpy188III | TCNNGA | 5 cut(s) | 163, 214, 496, 556, 599 |
| Hpy8I | GTNNAC | 2 cut(s) | 66, 386 |
| Hpy99I | CGWCG | 1 cut(s) | 174 |
| HpyAV | CCTTC | 3 cut(s) | 283, 442, 686 |
| HpyCH4III | ACNGT | 2 cut(s) | 366, 470 |
| HpyCH4IV | ACGT | 4 cut(s) | 661, 721, 739, 829 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 221, 869 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 247, 637, 900, 909 |
| HpyF3I | CTNAG | 5 cut(s) | 191, 534, 588, 648, 813 |
| HpySE526I | ACGT | 4 cut(s) | 661, 721, 739, 829 |
| Hsp92I | GRCGYC | 2 cut(s) | 172, 780 |
| Hsp92II | CATG | 7 cut(s) | 149, 373, 545, 602, 787, 892, 924 |
| HspAI | GCGC | 5 cut(s) | 239, 250, 780, 901, 912 |
| KasI | GGCGCC | 1 cut(s) | 779 |
| KpnI | GGTACC | 1 cut(s) | 646 |
| Kzo9I | GATC | 3 cut(s) | 115, 210, 492 |
| LguI | GCTCTTC | 2 cut(s) | 240, 360 |
| LmnI | GCTCC | 1 cut(s) | 637 |
| LweI | GCATC | 1 cut(s) | 156 |
| MaeI | CTAG | 3 cut(s) | 242, 765, 833 |
| MaeII | ACGT | 4 cut(s) | 661, 721, 739, 829 |
| MaeIII | GTNAC | 3 cut(s) | 331, 394, 835 |
| MalI | GATC | 3 cut(s) | 117, 212, 494 |
| MbiI | CCGCTC | 1 cut(s) | 640 |
| MboI | GATC | 3 cut(s) | 115, 210, 492 |
| MboII | GAAGA | 2 cut(s) | 257, 347 |
| MfeI | CAATTG | 1 cut(s) | 896 |
| MflI | RGATCY | 1 cut(s) | 115 |
| MhlI | GDGCHC | 2 cut(s) | 633, 671 |
| MluCI | AATT | 6 cut(s) | 343, 411, 562, 568, 607, 896 |
| Mly113I | GGCGCC | 1 cut(s) | 780 |
| MlyI | GAGTC | 2 cut(s) | 61, 856 |
| Mph1103I | ATGCAT | 1 cut(s) | 871 |
| MroXI | GAANNNNTTC | 1 cut(s) | 354 |
| MslI | CAYNNNNRTG | 2 cut(s) | 554, 919 |
| MspI | CCGG | 1 cut(s) | 113 |
| MspR9I | CCNGG | 3 cut(s) | 101, 113, 689 |
| MunI | CAATTG | 1 cut(s) | 896 |
| Mva1269I | GAATGC | 1 cut(s) | 223 |
| MvaI | CCWGG | 2 cut(s) | 101, 689 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 247, 637, 900, 909 |
| NarI | GGCGCC | 1 cut(s) | 780 |
| NciI | CCSGG | 1 cut(s) | 113 |
| NcoI | CCATGG | 1 cut(s) | 783 |
| NdeI | CATATG | 1 cut(s) | 177 |
| NdeII | GATC | 3 cut(s) | 115, 210, 492 |
| NlaIII | CATG | 7 cut(s) | 149, 373, 545, 602, 787, 892, 924 |
| NlaIV | GGNNCC | 6 cut(s) | 30, 105, 644, 669, 781, 802 |
| NmuCI | GTSAC | 2 cut(s) | 394, 835 |
| NsiI | ATGCAT | 1 cut(s) | 871 |
| NspI | RCATGY | 1 cut(s) | 149 |
| PaeI | GCATGC | 1 cut(s) | 149 |
| PagI | TCATGA | 1 cut(s) | 598 |
| PciSI | GCTCTTC | 2 cut(s) | 240, 360 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 826 |
| PctI | GAATGC | 1 cut(s) | 223 |
| PdmI | GAANNNNTTC | 1 cut(s) | 354 |
| PfeI | GAWTC | 1 cut(s) | 269 |
| Pfl23II | CGTACG | 1 cut(s) | 127 |
| PflFI | GACNNNGTC | 1 cut(s) | 841 |
| PkrI | GCNGC | 1 cut(s) | 905 |
| PleI | GAGTC | 2 cut(s) | 61, 855 |
| PluTI | GGCGCC | 1 cut(s) | 783 |
| PmaCI | CACGTG | 2 cut(s) | 722, 740 |
| PmlI | CACGTG | 2 cut(s) | 722, 740 |
| PpsI | GAGTC | 2 cut(s) | 61, 855 |
| Ppu21I | YACGTR | 2 cut(s) | 722, 740 |
| PpuMI | RGGWCCY | 1 cut(s) | 104 |
| PsiI | TTATAA | 2 cut(s) | 567, 612 |
| Psp5II | RGGWCCY | 1 cut(s) | 104 |
| Psp6I | CCWGG | 2 cut(s) | 99, 687 |
| PspCI | CACGTG | 2 cut(s) | 722, 740 |
| PspGI | CCWGG | 2 cut(s) | 99, 687 |
| PspLI | CGTACG | 1 cut(s) | 127 |
| PspN4I | GGNNCC | 6 cut(s) | 30, 105, 644, 669, 781, 802 |
| PspOMI | GGGCCC | 1 cut(s) | 667 |
| PspPI | GGNCC | 4 cut(s) | 104, 576, 667, 668 |
| PspPPI | RGGWCCY | 1 cut(s) | 104 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 293, 325 |
| PsuI | RGATCY | 1 cut(s) | 115 |
| PsyI | GACNNNGTC | 1 cut(s) | 841 |
| RsaI | GTAC | 5 cut(s) | 129, 311, 472, 618, 644 |
| RsaNI | GTAC | 5 cut(s) | 128, 310, 471, 617, 643 |
| RseI | CAYNNNNRTG | 2 cut(s) | 554, 919 |
| SapI | GCTCTTC | 2 cut(s) | 240, 360 |
| SatI | GCNGC | 1 cut(s) | 904 |
| Sau3AI | GATC | 3 cut(s) | 115, 210, 492 |
| Sau96I | GGNCC | 4 cut(s) | 104, 576, 667, 668 |
| SchI | GAGTC | 2 cut(s) | 61, 856 |
| ScrFI | CCNGG | 3 cut(s) | 101, 113, 689 |
| SduI | GDGCHC | 2 cut(s) | 633, 671 |
| SfaNI | GCATC | 1 cut(s) | 156 |
| SfcI | CTRYAG | 1 cut(s) | 528 |
| SfoI | GGCGCC | 1 cut(s) | 781 |
| SinI | GGWCC | 1 cut(s) | 104 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 554, 919 |
| SmlI | CTYRAG | 1 cut(s) | 150 |
| SmoI | CTYRAG | 1 cut(s) | 150 |
| SphI | GCATGC | 1 cut(s) | 149 |
| Sse9I | AATT | 6 cut(s) | 343, 411, 562, 568, 607, 896 |
| SsiI | CCGC | 5 cut(s) | 640, 679, 824, 883, 904 |
| SspDI | GGCGCC | 1 cut(s) | 779 |
| SspI | AATATT | 1 cut(s) | 87 |
| SspMI | CTAG | 3 cut(s) | 242, 765, 833 |
| StyD4I | CCNGG | 3 cut(s) | 99, 111, 687 |
| StyI | CCWWGG | 1 cut(s) | 783 |
| TaaI | ACNGT | 2 cut(s) | 366, 470 |
| TaiI | ACGT | 4 cut(s) | 664, 724, 742, 832 |
| TaqI | TCGA | 4 cut(s) | 11, 21, 209, 845 |
| TasI | AATT | 6 cut(s) | 343, 411, 562, 568, 607, 896 |
| TatI | WGTACW | 1 cut(s) | 309 |
| TauI | GCSGC | 1 cut(s) | 906 |
| TfiI | GAWTC | 1 cut(s) | 269 |
| TseFI | GTSAC | 2 cut(s) | 394, 835 |
| Tsp45I | GTSAC | 2 cut(s) | 394, 835 |
| TspDTI | ATGAA | 3 cut(s) | 494, 587, 877 |
| TspGWI | ACGGA | 1 cut(s) | 505 |
| Tth111I | GACNNNGTC | 1 cut(s) | 841 |
| VpaK11BI | GGWCC | 1 cut(s) | 104 |
| XceI | RCATGY | 1 cut(s) | 149 |
| XmnI | GAANNNNTTC | 1 cut(s) | 354 |
| XspI | CTAG | 3 cut(s) | 242, 765, 833 |
| Zsp2I | ATGCAT | 1 cut(s) | 871 |