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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 273 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 497 |
| AccII | CGCG | 1 cut(s) | 389 |
| AccIII | TCCGGA | 1 cut(s) | 193 |
| AclWI | GGATC | 1 cut(s) | 482 |
| AfaI | GTAC | 1 cut(s) | 392 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 224, 295, 348, 497 |
| AflIII | ACRYGT | 1 cut(s) | 387 |
| AgsI | TTSAA | 2 cut(s) | 470, 478 |
| AluBI | AGCT | 2 cut(s) | 106, 128 |
| AluI | AGCT | 2 cut(s) | 106, 128 |
| Alw21I | GWGCWC | 1 cut(s) | 325 |
| Alw26I | GTCTC | 1 cut(s) | 40 |
| Alw44I | GTGCAC | 1 cut(s) | 321 |
| AlwI | GGATC | 1 cut(s) | 482 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 497 |
| Aor13HI | TCCGGA | 1 cut(s) | 193 |
| AoxI | GGCC | 1 cut(s) | 481 |
| ApaLI | GTGCAC | 1 cut(s) | 321 |
| AseI | ATTAAT | 1 cut(s) | 44 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| AvaII | GGWCC | 1 cut(s) | 275 |
| AxyI | CCTNAGG | 1 cut(s) | 246 |
| BaeGI | GKGCMC | 1 cut(s) | 325 |
| BanII | GRGCYC | 1 cut(s) | 217 |
| BbsI | GAAGAC | 1 cut(s) | 477 |
| Bbv12I | GWGCWC | 1 cut(s) | 325 |
| BcoDI | GTCTC | 1 cut(s) | 40 |
| BfaI | CTAG | 3 cut(s) | 81, 168, 264 |
| Bme18I | GGWCC | 1 cut(s) | 275 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BmiI | GGNNCC | 3 cut(s) | 115, 216, 329 |
| BmsI | GCATC | 1 cut(s) | 96 |
| BpiI | GAAGAC | 1 cut(s) | 477 |
| BsaBI | GATNNNNATC | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 1 cut(s) | 174 |
| BsaWI | WCCGGW | 1 cut(s) | 193 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 224, 295, 348, 497 |
| Bse1I | ACTGG | 2 cut(s) | 491, 502 |
| Bse21I | CCTNAGG | 1 cut(s) | 246 |
| Bse8I | GATNNNNATC | 1 cut(s) | 450 |
| BseAI | TCCGGA | 1 cut(s) | 193 |
| BseDI | CCNNGG | 1 cut(s) | 174 |
| BseJI | GATNNNNATC | 1 cut(s) | 450 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 224, 295, 348, 497 |
| BseMII | CTCAG | 1 cut(s) | 237 |
| BseNI | ACTGG | 2 cut(s) | 491, 502 |
| BseSI | GKGCMC | 1 cut(s) | 325 |
| Bsh1236I | CGCG | 1 cut(s) | 389 |
| BshFI | GGCC | 1 cut(s) | 483 |
| BsiHKAI | GWGCWC | 1 cut(s) | 325 |
| BsiSI | CCGG | 1 cut(s) | 194 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 224, 295, 348, 497 |
| BsmAI | GTCTC | 1 cut(s) | 40 |
| BsmBI | CGTCTC | 1 cut(s) | 40 |
| BsnI | GGCC | 1 cut(s) | 483 |
| Bsp1286I | GDGCHC | 2 cut(s) | 217, 325 |
| Bsp13I | TCCGGA | 1 cut(s) | 193 |
| Bsp143I | GATC | 4 cut(s) | 6, 439, 451, 487 |
| BspANI | GGCC | 1 cut(s) | 483 |
| BspCNI | CTCAG | 1 cut(s) | 238 |
| BspEI | TCCGGA | 1 cut(s) | 193 |
| BspFNI | CGCG | 1 cut(s) | 389 |
| BspHI | TCATGA | 1 cut(s) | 100 |
| BspLI | GGNNCC | 3 cut(s) | 115, 216, 329 |
| BspPI | GGATC | 1 cut(s) | 482 |
| BsrI | ACTGG | 2 cut(s) | 491, 502 |
| BssECI | CCNNGG | 1 cut(s) | 174 |
| BssMI | GATC | 4 cut(s) | 6, 439, 451, 487 |
| Bst4CI | ACNGT | 1 cut(s) | 332 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 2 cut(s) | 246, 461 |
| BstDSI | CCRYGG | 1 cut(s) | 174 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 222 |
| BstFNI | CGCG | 1 cut(s) | 389 |
| BstKTI | GATC | 4 cut(s) | 9, 442, 454, 490 |
| BstMAI | GTCTC | 1 cut(s) | 40 |
| BstMBI | GATC | 4 cut(s) | 6, 439, 451, 487 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 235, 416 |
| BstSLI | GKGCMC | 1 cut(s) | 325 |
| BstUI | CGCG | 1 cut(s) | 389 |
| BstV2I | GAAGAC | 1 cut(s) | 477 |
| BstX2I | RGATCY | 1 cut(s) | 487 |
| BstYI | RGATCY | 1 cut(s) | 487 |
| Bsu36I | CCTNAGG | 1 cut(s) | 246 |
| BsuRI | GGCC | 1 cut(s) | 483 |
| BtgI | CCRYGG | 1 cut(s) | 174 |
| BtsIMutI | CAGTG | 1 cut(s) | 498 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| CaiI | CAGNNNCTG | 1 cut(s) | 497 |
| CciI | TCATGA | 1 cut(s) | 100 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| CseI | GACGC | 2 cut(s) | 93, 327 |
| Csp6I | GTAC | 1 cut(s) | 391 |
| CviAII | CATG | 3 cut(s) | 101, 118, 427 |
| CviJI | RGCY | 8 cut(s) | 53, 106, 116, 128, 187, 215, 353, 483 |
| CviKI_1 | RGCY | 8 cut(s) | 53, 106, 116, 128, 187, 215, 353, 483 |
| CviQI | GTAC | 1 cut(s) | 391 |
| DdeI | CTNAG | 2 cut(s) | 246, 461 |
| DpnI | GATC | 4 cut(s) | 8, 441, 453, 489 |
| DpnII | GATC | 4 cut(s) | 6, 439, 451, 487 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 273 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 273 |
| Eco24I | GRGCYC | 1 cut(s) | 217 |
| Eco47I | GGWCC | 1 cut(s) | 275 |
| Eco81I | CCTNAGG | 1 cut(s) | 246 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 222 |
| EcoT38I | GRGCYC | 1 cut(s) | 217 |
| Esp3I | CGTCTC | 1 cut(s) | 40 |
| FaeI | CATG | 3 cut(s) | 104, 121, 430 |
| FaiI | YATR | 8 cut(s) | 102, 119, 146, 162, 207, 280, 361, 428 |
| FatI | CATG | 3 cut(s) | 100, 117, 426 |
| FriOI | GRGCYC | 1 cut(s) | 217 |
| FspBI | CTAG | 3 cut(s) | 81, 168, 264 |
| HaeIII | GGCC | 1 cut(s) | 483 |
| HapII | CCGG | 1 cut(s) | 194 |
| HgaI | GACGC | 2 cut(s) | 93, 327 |
| Hin1II | CATG | 3 cut(s) | 104, 121, 430 |
| HinfI | GANTC | 1 cut(s) | 197 |
| HpaII | CCGG | 1 cut(s) | 194 |
| Hpy166II | GTNNAC | 1 cut(s) | 323 |
| Hpy188I | TCNGA | 2 cut(s) | 66, 343 |
| Hpy188III | TCNNGA | 7 cut(s) | 10, 101, 168, 194, 264, 404, 443 |
| Hpy8I | GTNNAC | 1 cut(s) | 323 |
| HpyAV | CCTTC | 2 cut(s) | 37, 293 |
| HpyCH4III | ACNGT | 1 cut(s) | 332 |
| HpyCH4IV | ACGT | 3 cut(s) | 123, 268, 398 |
| HpyCH4V | TGCA | 3 cut(s) | 41, 323, 368 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 235, 416 |
| HpyF3I | CTNAG | 2 cut(s) | 246, 461 |
| HpySE526I | ACGT | 3 cut(s) | 123, 268, 398 |
| Hsp92II | CATG | 3 cut(s) | 104, 121, 430 |
| Kpn2I | TCCGGA | 1 cut(s) | 193 |
| Kzo9I | GATC | 4 cut(s) | 6, 439, 451, 487 |
| LmnI | GCTCC | 4 cut(s) | 113, 220, 235, 430 |
| LpnPI | CCDG | 6 cut(s) | 207, 258, 258, 386, 483, 504 |
| LweI | GCATC | 1 cut(s) | 96 |
| MaeI | CTAG | 3 cut(s) | 81, 168, 264 |
| MaeII | ACGT | 3 cut(s) | 123, 268, 398 |
| MaeIII | GTNAC | 1 cut(s) | 493 |
| MalI | GATC | 4 cut(s) | 8, 441, 453, 489 |
| MboI | GATC | 4 cut(s) | 6, 439, 451, 487 |
| MboII | GAAGA | 3 cut(s) | 166, 449, 482 |
| MflI | RGATCY | 1 cut(s) | 487 |
| MhlI | GDGCHC | 2 cut(s) | 217, 325 |
| MluCI | AATT | 3 cut(s) | 189, 202, 421 |
| MluI | ACGCGT | 1 cut(s) | 387 |
| MlyI | GAGTC | 1 cut(s) | 206 |
| MnlI | CCTC | 3 cut(s) | 218, 241, 289 |
| MroI | TCCGGA | 1 cut(s) | 193 |
| MseI | TTAA | 2 cut(s) | 44, 511 |
| MslI | CAYNNNNRTG | 1 cut(s) | 149 |
| MspI | CCGG | 1 cut(s) | 194 |
| MvnI | CGCG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 235, 416 |
| NdeII | GATC | 4 cut(s) | 6, 439, 451, 487 |
| NlaIII | CATG | 3 cut(s) | 104, 121, 430 |
| NlaIV | GGNNCC | 3 cut(s) | 115, 216, 329 |
| NmuCI | GTSAC | 1 cut(s) | 493 |
| PagI | TCATGA | 1 cut(s) | 100 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 497 |
| PleI | GAGTC | 1 cut(s) | 205 |
| PpsI | GAGTC | 1 cut(s) | 205 |
| PshBI | ATTAAT | 1 cut(s) | 44 |
| PspN4I | GGNNCC | 3 cut(s) | 115, 216, 329 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| PstNI | CAGNNNCTG | 1 cut(s) | 497 |
| PsuI | RGATCY | 1 cut(s) | 487 |
| RsaI | GTAC | 1 cut(s) | 392 |
| RsaNI | GTAC | 1 cut(s) | 391 |
| RseI | CAYNNNNRTG | 1 cut(s) | 149 |
| SaqAI | TTAA | 2 cut(s) | 44, 511 |
| Sau3AI | GATC | 4 cut(s) | 6, 439, 451, 487 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| SchI | GAGTC | 1 cut(s) | 206 |
| SduI | GDGCHC | 2 cut(s) | 217, 325 |
| SetI | ASST | 6 cut(s) | 29, 108, 126, 130, 271, 401 |
| SfaNI | GCATC | 1 cut(s) | 96 |
| SinI | GGWCC | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 149 |
| Sse9I | AATT | 3 cut(s) | 189, 202, 421 |
| SspMI | CTAG | 3 cut(s) | 81, 168, 264 |
| TaaI | ACNGT | 1 cut(s) | 332 |
| TaiI | ACGT | 3 cut(s) | 126, 271, 401 |
| TaqI | TCGA | 1 cut(s) | 9 |
| TasI | AATT | 3 cut(s) | 189, 202, 421 |
| Tru1I | TTAA | 2 cut(s) | 44, 511 |
| Tru9I | TTAA | 2 cut(s) | 44, 511 |
| TscAI | CASTG | 1 cut(s) | 498 |
| TseFI | GTSAC | 1 cut(s) | 493 |
| Tsp45I | GTSAC | 1 cut(s) | 493 |
| TspDTI | ATGAA | 2 cut(s) | 89, 134 |
| TspGWI | ACGGA | 1 cut(s) | 340 |
| TspRI | CASTG | 1 cut(s) | 498 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 497 |
| VneI | GTGCAC | 1 cut(s) | 321 |
| VpaK11BI | GGWCC | 1 cut(s) | 275 |
| VspI | ATTAAT | 1 cut(s) | 44 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 222 |
| XbaI | TCTAGA | 2 cut(s) | 167, 263 |
| XspI | CTAG | 3 cut(s) | 81, 168, 264 |