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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 474 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 134 |
| AatII | GACGTC | 1 cut(s) | 132 |
| AccB1I | GGYRCC | 2 cut(s) | 650, 830 |
| AccII | CGCG | 3 cut(s) | 118, 320, 750 |
| AccIII | TCCGGA | 1 cut(s) | 730 |
| AciI | CCGC | 4 cut(s) | 118, 442, 930, 1080 |
| AclI | AACGTT | 1 cut(s) | 393 |
| AcoI | YGGCCR | 2 cut(s) | 8, 517 |
| AcsI | RAATTY | 1 cut(s) | 976 |
| AcuI | CTGAAG | 1 cut(s) | 107 |
| AcyI | GRCGYC | 3 cut(s) | 129, 651, 831 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 17, 343, 761, 941, 1113 |
| AflIII | ACRYGT | 3 cut(s) | 149, 781, 1060 |
| AgeI | ACCGGT | 1 cut(s) | 709 |
| AgsI | TTSAA | 4 cut(s) | 269, 457, 591, 983 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 18 |
| AjiI | CACGTC | 2 cut(s) | 152, 177 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 227, 259 |
| AluBI | AGCT | 9 cut(s) | 197, 257, 281, 361, 643, 665, 823, 845, 1151 |
| AluI | AGCT | 9 cut(s) | 197, 257, 281, 361, 643, 665, 823, 845, 1151 |
| Alw21I | GWGCWC | 4 cut(s) | 243, 645, 825, 1042 |
| Alw26I | GTCTC | 1 cut(s) | 504 |
| Alw44I | GTGCAC | 1 cut(s) | 1038 |
| Aor13HI | TCCGGA | 1 cut(s) | 730 |
| AoxI | GGCC | 3 cut(s) | 8, 119, 517 |
| ApaLI | GTGCAC | 1 cut(s) | 1038 |
| ApeKI | GCWGC | 2 cut(s) | 57, 379 |
| ApoI | RAATTY | 1 cut(s) | 976 |
| AsiGI | ACCGGT | 1 cut(s) | 709 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 486 |
| AspLEI | GCGC | 4 cut(s) | 322, 653, 752, 833 |
| AspS9I | GGNCC | 3 cut(s) | 20, 120, 992 |
| AsuC2I | CCSGG | 1 cut(s) | 187 |
| AvaII | GGWCC | 2 cut(s) | 20, 992 |
| BaeGI | GKGCMC | 1 cut(s) | 1042 |
| BalI | TGGCCA | 1 cut(s) | 519 |
| BanI | GGYRCC | 2 cut(s) | 650, 830 |
| BanII | GRGCYC | 3 cut(s) | 73, 645, 825 |
| BbsI | GAAGAC | 2 cut(s) | 354, 557 |
| Bbv12I | GWGCWC | 4 cut(s) | 243, 645, 825, 1042 |
| BbvI | GCAGC | 2 cut(s) | 69, 391 |
| BccI | CCATC | 4 cut(s) | 194, 423, 499, 578 |
| BcnI | CCSGG | 1 cut(s) | 187 |
| BcoDI | GTCTC | 1 cut(s) | 504 |
| BfaI | CTAG | 3 cut(s) | 228, 705, 885 |
| BfmI | CTRYAG | 2 cut(s) | 742, 922 |
| BfoI | RGCGCY | 2 cut(s) | 654, 834 |
| BisI | GCNGC | 3 cut(s) | 58, 119, 380 |
| BlsI | GCNGC | 3 cut(s) | 59, 120, 381 |
| Bme1390I | CCNGG | 1 cut(s) | 187 |
| Bme18I | GGWCC | 2 cut(s) | 20, 992 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 18 |
| BmgBI | CACGTC | 2 cut(s) | 152, 177 |
| BmgT120I | GGNCC | 3 cut(s) | 20, 120, 992 |
| BmiI | GGNNCC | 4 cut(s) | 652, 832, 1046, 1084 |
| BmrFI | CCNGG | 1 cut(s) | 187 |
| BmsI | GCATC | 2 cut(s) | 166, 784 |
| BpiI | GAAGAC | 2 cut(s) | 354, 557 |
| Bpu10I | CCTNAGC | 1 cut(s) | 62 |
| BpuEI | CTTGAG | 2 cut(s) | 281, 395 |
| BpuMI | CCSGG | 1 cut(s) | 187 |
| BsaBI | GATNNNNATC | 1 cut(s) | 542 |
| BsaHI | GRCGYC | 3 cut(s) | 129, 651, 831 |
| BsaJI | CCNNGG | 4 cut(s) | 185, 891, 1048, 1093 |
| BsaWI | WCCGGW | 2 cut(s) | 709, 730 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 227, 257 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 17, 343, 761, 941, 1113 |
| Bse118I | RCCGGY | 2 cut(s) | 6, 709 |
| Bse1I | ACTGG | 1 cut(s) | 161 |
| Bse8I | GATNNNNATC | 1 cut(s) | 542 |
| BseAI | TCCGGA | 1 cut(s) | 730 |
| BseDI | CCNNGG | 4 cut(s) | 185, 891, 1048, 1093 |
| BseGI | GGATG | 3 cut(s) | 157, 626, 806 |
| BseJI | GATNNNNATC | 1 cut(s) | 542 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 17, 343, 761, 941, 1113 |
| BseNI | ACTGG | 1 cut(s) | 161 |
| BseSI | GKGCMC | 1 cut(s) | 1042 |
| BseX3I | CGGCCG | 1 cut(s) | 8 |
| BseXI | GCAGC | 2 cut(s) | 69, 391 |
| BsgI | GTGCAG | 1 cut(s) | 561 |
| Bsh1236I | CGCG | 3 cut(s) | 118, 320, 750 |
| Bsh1285I | CGRYCG | 1 cut(s) | 11 |
| BshFI | GGCC | 3 cut(s) | 10, 121, 519 |
| BshNI | GGYRCC | 2 cut(s) | 650, 830 |
| BshTI | ACCGGT | 1 cut(s) | 709 |
| BsiEI | CGRYCG | 1 cut(s) | 11 |
| BsiHKAI | GWGCWC | 4 cut(s) | 243, 645, 825, 1042 |
| BsiSI | CCGG | 4 cut(s) | 7, 187, 710, 731 |
| BslFI | GGGAC | 1 cut(s) | 912 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 17, 343, 761, 941, 1113 |
| BsmAI | GTCTC | 1 cut(s) | 504 |
| BsmFI | GGGAC | 1 cut(s) | 912 |
| BsnI | GGCC | 3 cut(s) | 10, 121, 519 |
| Bsp1286I | GDGCHC | 5 cut(s) | 73, 243, 645, 825, 1042 |
| Bsp13I | TCCGGA | 1 cut(s) | 730 |
| Bsp143I | GATC | 2 cut(s) | 543, 1140 |
| Bsp19I | CCATGG | 1 cut(s) | 1093 |
| BspACI | CCGC | 4 cut(s) | 118, 442, 930, 1080 |
| BspANI | GGCC | 3 cut(s) | 10, 121, 519 |
| BspEI | TCCGGA | 1 cut(s) | 730 |
| BspFNI | CGCG | 3 cut(s) | 118, 320, 750 |
| BspHI | TCATGA | 2 cut(s) | 637, 817 |
| BspLI | GGNNCC | 4 cut(s) | 652, 832, 1046, 1084 |
| BspT107I | GGYRCC | 2 cut(s) | 650, 830 |
| BsrFI | RCCGGY | 2 cut(s) | 6, 709 |
| BsrI | ACTGG | 1 cut(s) | 161 |
| BssAI | RCCGGY | 2 cut(s) | 6, 709 |
| BssECI | CCNNGG | 4 cut(s) | 185, 891, 1048, 1093 |
| BssMI | GATC | 2 cut(s) | 543, 1140 |
| BssNI | GRCGYC | 3 cut(s) | 129, 651, 831 |
| BssT1I | CCWWGG | 1 cut(s) | 1093 |
| Bst4CI | ACNGT | 1 cut(s) | 1049 |
| Bst6I | CTCTTC | 4 cut(s) | 46, 492, 782, 1061 |
| BstACI | GRCGYC | 3 cut(s) | 129, 651, 831 |
| BstC8I | GCNNGC | 2 cut(s) | 255, 1038 |
| BstDEI | CTNAG | 4 cut(s) | 62, 720, 900, 963 |
| BstDSI | CCRYGG | 3 cut(s) | 891, 1048, 1093 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 341 |
| BstF5I | GGATG | 3 cut(s) | 157, 626, 806 |
| BstFNI | CGCG | 3 cut(s) | 118, 320, 750 |
| BstH2I | RGCGCY | 2 cut(s) | 654, 834 |
| BstHHI | GCGC | 4 cut(s) | 322, 653, 752, 833 |
| BstKTI | GATC | 2 cut(s) | 546, 1143 |
| BstMAI | GTCTC | 1 cut(s) | 504 |
| BstMBI | GATC | 2 cut(s) | 543, 1140 |
| BstMCI | CGRYCG | 1 cut(s) | 11 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 63, 105, 179, 269, 278 |
| BstSCI | CCNGG | 1 cut(s) | 185 |
| BstSFI | CTRYAG | 2 cut(s) | 742, 922 |
| BstSLI | GKGCMC | 1 cut(s) | 1042 |
| BstUI | CGCG | 3 cut(s) | 118, 320, 750 |
| BstV1I | GCAGC | 2 cut(s) | 69, 391 |
| BstV2I | GAAGAC | 2 cut(s) | 354, 557 |
| BstZI | CGGCCG | 1 cut(s) | 8 |
| BsuRI | GGCC | 3 cut(s) | 10, 121, 519 |
| BtgI | CCRYGG | 3 cut(s) | 891, 1048, 1093 |
| BtgZI | GCGATG | 1 cut(s) | 442 |
| BtrI | CACGTC | 2 cut(s) | 152, 177 |
| BtsCI | GGATG | 3 cut(s) | 157, 626, 806 |
| BtsIMutI | CAGTG | 2 cut(s) | 123, 578 |
| Cac8I | GCNNGC | 2 cut(s) | 255, 1038 |
| CciI | TCATGA | 2 cut(s) | 637, 817 |
| CfoI | GCGC | 4 cut(s) | 322, 653, 752, 833 |
| Cfr10I | RCCGGY | 2 cut(s) | 6, 709 |
| Cfr13I | GGNCC | 3 cut(s) | 20, 120, 992 |
| CseI | GACGC | 4 cut(s) | 124, 326, 774, 954 |
| CspAI | ACCGGT | 1 cut(s) | 709 |
| CviAII | CATG | 6 cut(s) | 310, 638, 655, 818, 835, 1094 |
| DdeI | CTNAG | 4 cut(s) | 62, 720, 900, 963 |
| DinI | GGCGCC | 2 cut(s) | 652, 832 |
| DpnI | GATC | 2 cut(s) | 545, 1142 |
| DpnII | GATC | 2 cut(s) | 543, 1140 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 134 |
| DriI | GACNNNNNGTC | 1 cut(s) | 18 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 134 |
| EaeI | YGGCCR | 2 cut(s) | 8, 517 |
| EagI | CGGCCG | 1 cut(s) | 8 |
| Eam1104I | CTCTTC | 4 cut(s) | 46, 492, 782, 1061 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 18 |
| EarI | CTCTTC | 4 cut(s) | 46, 492, 782, 1061 |
| EciI | GGCGGA | 1 cut(s) | 1095 |
| Ecl136II | GAGCTC | 2 cut(s) | 643, 823 |
| EclXI | CGGCCG | 1 cut(s) | 8 |
| Eco130I | CCWWGG | 1 cut(s) | 1093 |
| Eco24I | GRGCYC | 3 cut(s) | 73, 645, 825 |
| Eco47I | GGWCC | 2 cut(s) | 20, 992 |
| Eco52I | CGGCCG | 1 cut(s) | 8 |
| Eco53kI | GAGCTC | 2 cut(s) | 643, 823 |
| Eco57I | CTGAAG | 1 cut(s) | 107 |
| EcoICRI | GAGCTC | 2 cut(s) | 643, 823 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 341 |
| EcoT14I | CCWWGG | 1 cut(s) | 1093 |
| EcoT38I | GRGCYC | 3 cut(s) | 73, 645, 825 |
| EgeI | GGCGCC | 2 cut(s) | 652, 832 |
| EheI | GGCGCC | 2 cut(s) | 652, 832 |
| ErhI | CCWWGG | 1 cut(s) | 1093 |
| FaeI | CATG | 6 cut(s) | 313, 641, 658, 821, 838, 1097 |
| FaqI | GGGAC | 1 cut(s) | 912 |
| FatI | CATG | 6 cut(s) | 309, 637, 654, 817, 834, 1093 |
| FauI | CCCGC | 1 cut(s) | 937 |
| FauNDI | CATATG | 1 cut(s) | 997 |
| Fnu4HI | GCNGC | 3 cut(s) | 58, 119, 380 |
| FokI | GGATG | 3 cut(s) | 144, 633, 813 |
| FriOI | GRGCYC | 3 cut(s) | 73, 645, 825 |
| Fsp4HI | GCNGC | 3 cut(s) | 58, 119, 380 |
| FspBI | CTAG | 3 cut(s) | 228, 705, 885 |
| GlaI | GCGC | 4 cut(s) | 321, 652, 751, 832 |
| GluI | GCNGC | 3 cut(s) | 58, 119, 380 |
| HaeII | RGCGCY | 2 cut(s) | 654, 834 |
| HaeIII | GGCC | 3 cut(s) | 10, 121, 519 |
| HapII | CCGG | 4 cut(s) | 7, 187, 710, 731 |
| HgaI | GACGC | 4 cut(s) | 124, 326, 774, 954 |
| HhaI | GCGC | 4 cut(s) | 322, 653, 752, 833 |
| Hin1I | GRCGYC | 3 cut(s) | 129, 651, 831 |
| Hin1II | CATG | 6 cut(s) | 313, 641, 658, 821, 838, 1097 |
| Hin6I | GCGC | 4 cut(s) | 320, 651, 750, 831 |
| HinP1I | GCGC | 4 cut(s) | 320, 651, 750, 831 |
| HincII | GTYRAC | 3 cut(s) | 192, 779, 1058 |
| HindII | GTYRAC | 3 cut(s) | 192, 779, 1058 |
| HinfI | GANTC | 4 cut(s) | 401, 553, 734, 914 |
| HpaII | CCGG | 4 cut(s) | 7, 187, 710, 731 |
| Hpy166II | GTNNAC | 5 cut(s) | 139, 192, 779, 1040, 1058 |
| Hpy188I | TCNGA | 5 cut(s) | 234, 481, 504, 603, 1090 |
| Hpy188III | TCNNGA | 8 cut(s) | 209, 298, 413, 547, 638, 731, 818, 911 |
| Hpy8I | GTNNAC | 5 cut(s) | 139, 192, 779, 1040, 1058 |
| HpyAV | CCTTC | 3 cut(s) | 574, 767, 1010 |
| HpyCH4III | ACNGT | 1 cut(s) | 1049 |
| HpyCH4IV | ACGT | 9 cut(s) | 129, 151, 176, 237, 393, 660, 781, 840, 1060 |
| HpyCH4V | TGCA | 4 cut(s) | 578, 617, 797, 1040 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 63, 105, 179, 269, 278 |
| HpyF3I | CTNAG | 4 cut(s) | 62, 720, 900, 963 |
| HpySE526I | ACGT | 9 cut(s) | 129, 151, 176, 237, 393, 660, 781, 840, 1060 |
| Hsp92I | GRCGYC | 3 cut(s) | 129, 651, 831 |
| Hsp92II | CATG | 6 cut(s) | 313, 641, 658, 821, 838, 1097 |
| HspAI | GCGC | 4 cut(s) | 320, 651, 750, 831 |
| KasI | GGCGCC | 2 cut(s) | 650, 830 |
| Kpn2I | TCCGGA | 1 cut(s) | 730 |
| Kzo9I | GATC | 2 cut(s) | 543, 1140 |
| LmnI | GCTCC | 4 cut(s) | 327, 952, 1082, 1148 |
| Lsp1109I | GCAGC | 2 cut(s) | 69, 391 |
| LweI | GCATC | 2 cut(s) | 166, 784 |
| MaeI | CTAG | 3 cut(s) | 228, 705, 885 |
| MaeII | ACGT | 9 cut(s) | 129, 151, 176, 237, 393, 660, 781, 840, 1060 |
| MaeIII | GTNAC | 2 cut(s) | 398, 1100 |
| MalI | GATC | 2 cut(s) | 545, 1142 |
| MboI | GATC | 2 cut(s) | 543, 1140 |
| MhlI | GDGCHC | 5 cut(s) | 73, 243, 645, 825, 1042 |
| MlsI | TGGCCA | 1 cut(s) | 519 |
| MluCI | AATT | 5 cut(s) | 291, 528, 595, 726, 976 |
| MluNI | TGGCCA | 1 cut(s) | 519 |
| Mly113I | GGCGCC | 2 cut(s) | 651, 831 |
| MlyI | GAGTC | 4 cut(s) | 395, 547, 743, 923 |
| MmeI | TCCRAC | 1 cut(s) | 1113 |
| Mox20I | TGGCCA | 1 cut(s) | 519 |
| MroI | TCCGGA | 1 cut(s) | 730 |
| MroXI | GAANNNNTTC | 1 cut(s) | 486 |
| MscI | TGGCCA | 1 cut(s) | 519 |
| MslI | CAYNNNNRTG | 1 cut(s) | 312 |
| Msp20I | TGGCCA | 1 cut(s) | 519 |
| MspA1I | CMGCKG | 1 cut(s) | 197 |
| MspI | CCGG | 4 cut(s) | 7, 187, 710, 731 |
| MspR9I | CCNGG | 1 cut(s) | 187 |
| MvnI | CGCG | 3 cut(s) | 118, 320, 750 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 63, 105, 179, 269, 278 |
| NarI | GGCGCC | 2 cut(s) | 651, 831 |
| NciI | CCSGG | 1 cut(s) | 187 |
| NcoI | CCATGG | 1 cut(s) | 1093 |
| NdeI | CATATG | 1 cut(s) | 997 |
| NdeII | GATC | 2 cut(s) | 543, 1140 |
| NlaIII | CATG | 6 cut(s) | 313, 641, 658, 821, 838, 1097 |
| NlaIV | GGNNCC | 4 cut(s) | 652, 832, 1046, 1084 |
| NmeAIII | GCCGAG | 2 cut(s) | 92, 1052 |
| NmuCI | GTSAC | 1 cut(s) | 398 |
| PagI | TCATGA | 2 cut(s) | 637, 817 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 952 |
| PdmI | GAANNNNTTC | 1 cut(s) | 486 |
| PinAI | ACCGGT | 1 cut(s) | 709 |
| PkrI | GCNGC | 3 cut(s) | 59, 120, 381 |
| PleI | GAGTC | 4 cut(s) | 395, 547, 742, 922 |
| PluTI | GGCGCC | 2 cut(s) | 654, 834 |
| PpsI | GAGTC | 4 cut(s) | 395, 547, 742, 922 |
| PsiI | TTATAA | 1 cut(s) | 474 |
| Psp124BI | GAGCTC | 2 cut(s) | 645, 825 |
| Psp1406I | AACGTT | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 4 cut(s) | 652, 832, 1046, 1084 |
| PspPI | GGNCC | 3 cut(s) | 20, 120, 992 |
| PvuII | CAGCTG | 1 cut(s) | 197 |
| RseI | CAYNNNNRTG | 1 cut(s) | 312 |
| SacI | GAGCTC | 2 cut(s) | 645, 825 |
| SatI | GCNGC | 3 cut(s) | 58, 119, 380 |
| Sau3AI | GATC | 2 cut(s) | 543, 1140 |
| Sau96I | GGNCC | 3 cut(s) | 20, 120, 992 |
| SchI | GAGTC | 4 cut(s) | 395, 547, 743, 923 |
| ScrFI | CCNGG | 1 cut(s) | 187 |
| SduI | GDGCHC | 5 cut(s) | 73, 243, 645, 825, 1042 |
| SfaNI | GCATC | 2 cut(s) | 166, 784 |
| SfcI | CTRYAG | 2 cut(s) | 742, 922 |
| SfoI | GGCGCC | 2 cut(s) | 652, 832 |
| SinI | GGWCC | 2 cut(s) | 20, 992 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 312 |
| SmlI | CTYRAG | 2 cut(s) | 296, 374 |
| SmoI | CTYRAG | 2 cut(s) | 296, 374 |
| Sse9I | AATT | 5 cut(s) | 291, 528, 595, 726, 976 |
| SsiI | CCGC | 4 cut(s) | 118, 442, 930, 1080 |
| SspDI | GGCGCC | 2 cut(s) | 650, 830 |
| SspI | AATATT | 1 cut(s) | 512 |
| SspMI | CTAG | 3 cut(s) | 228, 705, 885 |
| SstI | GAGCTC | 2 cut(s) | 645, 825 |
| StyD4I | CCNGG | 1 cut(s) | 185 |
| StyI | CCWWGG | 1 cut(s) | 1093 |
| TaaI | ACNGT | 1 cut(s) | 1049 |
| TaiI | ACGT | 9 cut(s) | 132, 154, 179, 240, 396, 663, 784, 843, 1063 |
| TaqI | TCGA | 2 cut(s) | 546, 1139 |
| TasI | AATT | 5 cut(s) | 291, 528, 595, 726, 976 |
| TauI | GCSGC | 1 cut(s) | 121 |
| TscAI | CASTG | 2 cut(s) | 130, 585 |
| TseFI | GTSAC | 1 cut(s) | 398 |
| TseI | GCWGC | 2 cut(s) | 57, 379 |
| Tsp45I | GTSAC | 1 cut(s) | 398 |
| TspDTI | ATGAA | 6 cut(s) | 326, 345, 626, 671, 806, 851 |
| TspGWI | ACGGA | 1 cut(s) | 1057 |
| TspRI | CASTG | 2 cut(s) | 130, 585 |
| VneI | GTGCAC | 1 cut(s) | 1038 |
| VpaK11BI | GGWCC | 2 cut(s) | 20, 992 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 341 |
| XapI | RAATTY | 1 cut(s) | 976 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 360 |
| XmnI | GAANNNNTTC | 1 cut(s) | 486 |
| XspI | CTAG | 3 cut(s) | 228, 705, 885 |
| ZraI | GACGTC | 1 cut(s) | 130 |