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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 437, 518 |
| AciI | CCGC | 3 cut(s) | 295, 333, 441 |
| AcyI | GRCGYC | 1 cut(s) | 519 |
| AfaI | GTAC | 1 cut(s) | 182 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 463, 467 |
| AgsI | TTSAA | 3 cut(s) | 310, 416, 554 |
| AjiI | CACGTC | 1 cut(s) | 70 |
| AjnI | CCWGG | 1 cut(s) | 63 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 222, 254 |
| AluBI | AGCT | 5 cut(s) | 48, 89, 95, 314, 365 |
| AluI | AGCT | 5 cut(s) | 48, 89, 95, 314, 365 |
| Alw26I | GTCTC | 1 cut(s) | 226 |
| AoxI | GGCC | 2 cut(s) | 489, 575 |
| ApeKI | GCWGC | 2 cut(s) | 113, 533 |
| AspA2I | CCTAGG | 2 cut(s) | 461, 523 |
| AspLEI | GCGC | 2 cut(s) | 473, 521 |
| AspS9I | GGNCC | 1 cut(s) | 576 |
| AsuHPI | GGTGA | 5 cut(s) | 263, 322, 524, 532, 539 |
| AvrII | CCTAGG | 2 cut(s) | 461, 523 |
| BaeGI | GKGCMC | 1 cut(s) | 440 |
| BanI | GGYRCC | 2 cut(s) | 437, 518 |
| BauI | CACGAG | 1 cut(s) | 315 |
| BbsI | GAAGAC | 2 cut(s) | 207, 423 |
| BbvI | GCAGC | 2 cut(s) | 125, 520 |
| BccI | CCATC | 5 cut(s) | 149, 276, 461, 491, 509 |
| BciT130I | CCWGG | 1 cut(s) | 65 |
| BcoDI | GTCTC | 1 cut(s) | 226 |
| BfaI | CTAG | 5 cut(s) | 45, 272, 401, 462, 524 |
| BfoI | RGCGCY | 1 cut(s) | 522 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 122 |
| BisI | GCNGC | 2 cut(s) | 114, 534 |
| BlnI | CCTAGG | 2 cut(s) | 461, 523 |
| BlsI | GCNGC | 2 cut(s) | 115, 535 |
| Bme1390I | CCNGG | 1 cut(s) | 65 |
| BmgBI | CACGTC | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 1 cut(s) | 576 |
| BmiI | GGNNCC | 2 cut(s) | 439, 520 |
| BmrFI | CCNGG | 1 cut(s) | 65 |
| BmsI | GCATC | 1 cut(s) | 520 |
| BpiI | GAAGAC | 2 cut(s) | 207, 423 |
| BpmI | CTGGAG | 1 cut(s) | 161 |
| Bpu10I | CCTNAGC | 1 cut(s) | 572 |
| BpuEI | CTTGAG | 1 cut(s) | 75 |
| BsaHI | GRCGYC | 1 cut(s) | 519 |
| BsaI | GGTCTC | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 3 cut(s) | 461, 492, 523 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 463, 467 |
| Bse1I | ACTGG | 1 cut(s) | 178 |
| BseBI | CCWGG | 1 cut(s) | 65 |
| BseDI | CCNNGG | 3 cut(s) | 461, 492, 523 |
| BseGI | GGATG | 4 cut(s) | 144, 172, 472, 502 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 463, 467 |
| BseNI | ACTGG | 1 cut(s) | 178 |
| BseSI | GKGCMC | 1 cut(s) | 440 |
| BseXI | GCAGC | 2 cut(s) | 125, 520 |
| BseYI | CCCAGC | 1 cut(s) | 432 |
| BsgI | GTGCAG | 1 cut(s) | 427 |
| BshFI | GGCC | 2 cut(s) | 491, 577 |
| BshNI | GGYRCC | 2 cut(s) | 437, 518 |
| BslFI | GGGAC | 1 cut(s) | 461 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 463, 467 |
| BsmAI | GTCTC | 1 cut(s) | 226 |
| BsmFI | GGGAC | 1 cut(s) | 461 |
| BsnI | GGCC | 2 cut(s) | 491, 577 |
| Bso31I | GGTCTC | 1 cut(s) | 226 |
| Bsp1286I | GDGCHC | 1 cut(s) | 440 |
| Bsp143I | GATC | 2 cut(s) | 385, 397 |
| Bsp19I | CCATGG | 1 cut(s) | 492 |
| BspACI | CCGC | 3 cut(s) | 295, 333, 441 |
| BspANI | GGCC | 2 cut(s) | 491, 577 |
| BspCNI | CTCAG | 1 cut(s) | 585 |
| BspLI | GGNNCC | 2 cut(s) | 439, 520 |
| BspT107I | GGYRCC | 2 cut(s) | 437, 518 |
| BspTNI | GGTCTC | 1 cut(s) | 226 |
| BsrI | ACTGG | 1 cut(s) | 178 |
| BssECI | CCNNGG | 3 cut(s) | 461, 492, 523 |
| BssMI | GATC | 2 cut(s) | 385, 397 |
| BssNI | GRCGYC | 1 cut(s) | 519 |
| BssSI | CACGAG | 1 cut(s) | 315 |
| BssT1I | CCWWGG | 3 cut(s) | 461, 492, 523 |
| Bst2BI | CACGAG | 1 cut(s) | 315 |
| Bst2UI | CCWGG | 1 cut(s) | 65 |
| Bst4CI | ACNGT | 1 cut(s) | 79 |
| BstACI | GRCGYC | 1 cut(s) | 519 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 2 cut(s) | 118, 572 |
| BstDSI | CCRYGG | 1 cut(s) | 492 |
| BstF5I | GGATG | 4 cut(s) | 144, 172, 472, 502 |
| BstH2I | RGCGCY | 1 cut(s) | 522 |
| BstHHI | GCGC | 2 cut(s) | 473, 521 |
| BstKTI | GATC | 2 cut(s) | 388, 400 |
| BstMAI | GTCTC | 1 cut(s) | 226 |
| BstMBI | GATC | 2 cut(s) | 385, 397 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 101, 110, 122, 131, 341, 362 |
| BstNI | CCWGG | 1 cut(s) | 65 |
| BstSCI | CCNGG | 1 cut(s) | 63 |
| BstSLI | GKGCMC | 1 cut(s) | 440 |
| BstV1I | GCAGC | 2 cut(s) | 125, 520 |
| BstV2I | GAAGAC | 2 cut(s) | 207, 423 |
| BsuRI | GGCC | 2 cut(s) | 491, 577 |
| BtgI | CCRYGG | 1 cut(s) | 492 |
| BtrI | CACGTC | 1 cut(s) | 70 |
| BtsCI | GGATG | 4 cut(s) | 144, 172, 472, 502 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CfoI | GCGC | 2 cut(s) | 473, 521 |
| Cfr13I | GGNCC | 1 cut(s) | 576 |
| CseI | GACGC | 1 cut(s) | 577 |
| Csp6I | GTAC | 1 cut(s) | 181 |
| CviAII | CATG | 3 cut(s) | 485, 493, 509 |
| CviQI | GTAC | 1 cut(s) | 181 |
| DdeI | CTNAG | 2 cut(s) | 118, 572 |
| DinI | GGCGCC | 1 cut(s) | 520 |
| DpnI | GATC | 2 cut(s) | 387, 399 |
| DpnII | GATC | 2 cut(s) | 385, 397 |
| Eco130I | CCWWGG | 3 cut(s) | 461, 492, 523 |
| Eco31I | GGTCTC | 1 cut(s) | 226 |
| EcoRII | CCWGG | 1 cut(s) | 63 |
| EcoT14I | CCWWGG | 3 cut(s) | 461, 492, 523 |
| EgeI | GGCGCC | 1 cut(s) | 520 |
| EheI | GGCGCC | 1 cut(s) | 520 |
| ErhI | CCWWGG | 3 cut(s) | 461, 492, 523 |
| FaeI | CATG | 3 cut(s) | 488, 496, 512 |
| FaqI | GGGAC | 1 cut(s) | 461 |
| FatI | CATG | 3 cut(s) | 484, 492, 508 |
| FauNDI | CATATG | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 2 cut(s) | 114, 534 |
| FokI | GGATG | 4 cut(s) | 131, 179, 479, 509 |
| Fsp4HI | GCNGC | 2 cut(s) | 114, 534 |
| FspBI | CTAG | 5 cut(s) | 45, 272, 401, 462, 524 |
| GlaI | GCGC | 2 cut(s) | 472, 520 |
| GluI | GCNGC | 2 cut(s) | 114, 534 |
| GsaI | CCCAGC | 1 cut(s) | 436 |
| GsuI | CTGGAG | 1 cut(s) | 161 |
| HaeII | RGCGCY | 1 cut(s) | 522 |
| HaeIII | GGCC | 2 cut(s) | 491, 577 |
| HgaI | GACGC | 1 cut(s) | 577 |
| HhaI | GCGC | 2 cut(s) | 473, 521 |
| Hin1I | GRCGYC | 1 cut(s) | 519 |
| Hin1II | CATG | 3 cut(s) | 488, 496, 512 |
| Hin6I | GCGC | 2 cut(s) | 471, 519 |
| HinP1I | GCGC | 2 cut(s) | 471, 519 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 3 cut(s) | 154, 170, 254 |
| HphI | GGTGA | 5 cut(s) | 263, 322, 524, 532, 539 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 567 |
| Hpy188III | TCNNGA | 4 cut(s) | 266, 317, 389, 401 |
| Hpy99I | CGWCG | 1 cut(s) | 251 |
| HpyAV | CCTTC | 2 cut(s) | 204, 457 |
| HpyCH4III | ACNGT | 1 cut(s) | 79 |
| HpyCH4IV | ACGT | 2 cut(s) | 69, 246 |
| HpyCH4V | TGCA | 2 cut(s) | 408, 536 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 101, 110, 122, 131, 341, 362 |
| HpyF3I | CTNAG | 2 cut(s) | 118, 572 |
| HpySE526I | ACGT | 2 cut(s) | 69, 246 |
| Hsp92I | GRCGYC | 1 cut(s) | 519 |
| Hsp92II | CATG | 3 cut(s) | 488, 496, 512 |
| HspAI | GCGC | 2 cut(s) | 471, 519 |
| KasI | GGCGCC | 1 cut(s) | 518 |
| Kzo9I | GATC | 2 cut(s) | 385, 397 |
| LmnI | GCTCC | 1 cut(s) | 180 |
| Lsp1109I | GCAGC | 2 cut(s) | 125, 520 |
| LweI | GCATC | 1 cut(s) | 520 |
| MaeI | CTAG | 5 cut(s) | 45, 272, 401, 462, 524 |
| MaeII | ACGT | 2 cut(s) | 69, 246 |
| MaeIII | GTNAC | 3 cut(s) | 5, 251, 328 |
| MalI | GATC | 2 cut(s) | 387, 399 |
| MboI | GATC | 2 cut(s) | 385, 397 |
| MboII | GAAGA | 7 cut(s) | 209, 212, 242, 332, 395, 404, 428 |
| MfeI | CAATTG | 1 cut(s) | 32 |
| MhlI | GDGCHC | 1 cut(s) | 440 |
| MluCI | AATT | 2 cut(s) | 17, 32 |
| Mly113I | GGCGCC | 1 cut(s) | 519 |
| MlyI | GAGTC | 2 cut(s) | 148, 248 |
| MnlI | CCTC | 4 cut(s) | 115, 302, 454, 481 |
| MslI | CAYNNNNRTG | 4 cut(s) | 149, 165, 510, 513 |
| MspR9I | CCNGG | 1 cut(s) | 65 |
| MunI | CAATTG | 1 cut(s) | 32 |
| MvaI | CCWGG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 101, 110, 122, 131, 341, 362 |
| NarI | GGCGCC | 1 cut(s) | 519 |
| NcoI | CCATGG | 1 cut(s) | 492 |
| NdeI | CATATG | 1 cut(s) | 162 |
| NdeII | GATC | 2 cut(s) | 385, 397 |
| NlaIII | CATG | 3 cut(s) | 488, 496, 512 |
| NlaIV | GGNNCC | 2 cut(s) | 439, 520 |
| NmuCI | GTSAC | 2 cut(s) | 251, 328 |
| PfeI | GAWTC | 1 cut(s) | 170 |
| PkrI | GCNGC | 2 cut(s) | 115, 535 |
| PleI | GAGTC | 2 cut(s) | 148, 248 |
| PluTI | GGCGCC | 1 cut(s) | 522 |
| PpsI | GAGTC | 2 cut(s) | 148, 248 |
| Psp6I | CCWGG | 1 cut(s) | 63 |
| PspFI | CCCAGC | 1 cut(s) | 432 |
| PspGI | CCWGG | 1 cut(s) | 63 |
| PspN4I | GGNNCC | 2 cut(s) | 439, 520 |
| PspPI | GGNCC | 1 cut(s) | 576 |
| RsaI | GTAC | 1 cut(s) | 182 |
| RsaNI | GTAC | 1 cut(s) | 181 |
| RseI | CAYNNNNRTG | 4 cut(s) | 149, 165, 510, 513 |
| SatI | GCNGC | 2 cut(s) | 114, 534 |
| Sau3AI | GATC | 2 cut(s) | 385, 397 |
| Sau96I | GGNCC | 1 cut(s) | 576 |
| SchI | GAGTC | 2 cut(s) | 148, 248 |
| ScrFI | CCNGG | 1 cut(s) | 65 |
| SduI | GDGCHC | 1 cut(s) | 440 |
| SfaNI | GCATC | 1 cut(s) | 520 |
| SfoI | GGCGCC | 1 cut(s) | 520 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 149, 165, 510, 513 |
| SmlI | CTYRAG | 1 cut(s) | 90 |
| SmoI | CTYRAG | 1 cut(s) | 90 |
| Sse9I | AATT | 2 cut(s) | 17, 32 |
| SsiI | CCGC | 3 cut(s) | 295, 333, 441 |
| SspDI | GGCGCC | 1 cut(s) | 518 |
| SspMI | CTAG | 5 cut(s) | 45, 272, 401, 462, 524 |
| StyD4I | CCNGG | 1 cut(s) | 63 |
| StyI | CCWWGG | 3 cut(s) | 461, 492, 523 |
| TaaI | ACNGT | 1 cut(s) | 79 |
| TaiI | ACGT | 2 cut(s) | 72, 249 |
| TaqI | TCGA | 1 cut(s) | 228 |
| TasI | AATT | 2 cut(s) | 17, 32 |
| TfiI | GAWTC | 1 cut(s) | 170 |
| TseFI | GTSAC | 2 cut(s) | 251, 328 |
| TseI | GCWGC | 2 cut(s) | 113, 533 |
| Tsp45I | GTSAC | 2 cut(s) | 251, 328 |
| TspDTI | ATGAA | 3 cut(s) | 206, 210, 494 |
| XbaI | TCTAGA | 1 cut(s) | 400 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 464 |
| XmaJI | CCTAGG | 2 cut(s) | 461, 523 |
| XspI | CTAG | 5 cut(s) | 45, 272, 401, 462, 524 |