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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 414, 459 |
| Acc36I | ACCTGC | 1 cut(s) | 549 |
| AccB1I | GGYRCC | 3 cut(s) | 91, 635, 677 |
| AccBSI | CCGCTC | 1 cut(s) | 487 |
| AccI | GTMKAC | 1 cut(s) | 232 |
| AciI | CCGC | 4 cut(s) | 316, 487, 535, 556 |
| AclWI | GGATC | 1 cut(s) | 111 |
| AcsI | RAATTY | 1 cut(s) | 323 |
| AcvI | CACGTG | 1 cut(s) | 596 |
| AcyI | GRCGYC | 1 cut(s) | 657 |
| AdeI | CACNNNGTG | 1 cut(s) | 581 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 34, 473, 474, 544, 597, 691 |
| AflIII | ACRYGT | 1 cut(s) | 593 |
| AgsI | TTSAA | 6 cut(s) | 66, 136, 143, 172, 328, 420 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 239 |
| AjnI | CCWGG | 2 cut(s) | 87, 619 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 4 cut(s) | 200, 256, 358, 380 |
| AluI | AGCT | 4 cut(s) | 200, 256, 358, 380 |
| AlwI | GGATC | 1 cut(s) | 111 |
| ApoI | RAATTY | 1 cut(s) | 323 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 201 |
| AspA2I | CCTAGG | 1 cut(s) | 689 |
| AspLEI | GCGC | 1 cut(s) | 480 |
| AspS9I | GGNCC | 1 cut(s) | 524 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AvaII | GGWCC | 1 cut(s) | 524 |
| AvrII | CCTAGG | 1 cut(s) | 689 |
| BanI | GGYRCC | 3 cut(s) | 91, 635, 677 |
| BauI | CACGAG | 1 cut(s) | 401 |
| BbrPI | CACGTG | 1 cut(s) | 596 |
| BciT130I | CCWGG | 2 cut(s) | 89, 621 |
| BciVI | GTATCC | 1 cut(s) | 626 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BfaI | CTAG | 1 cut(s) | 690 |
| BfmI | CTRYAG | 2 cut(s) | 209, 375 |
| BfuAI | ACCTGC | 1 cut(s) | 549 |
| BfuI | GTATCC | 1 cut(s) | 626 |
| BlnI | CCTAGG | 1 cut(s) | 689 |
| Bme1390I | CCNGG | 3 cut(s) | 89, 101, 621 |
| Bme18I | GGWCC | 1 cut(s) | 524 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 239 |
| BmgT120I | GGNCC | 1 cut(s) | 524 |
| BmiI | GGNNCC | 5 cut(s) | 93, 491, 525, 637, 679 |
| BmrFI | CCNGG | 3 cut(s) | 89, 101, 621 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| BsaAI | YACGTR | 1 cut(s) | 596 |
| BsaHI | GRCGYC | 1 cut(s) | 657 |
| BsaJI | CCNNGG | 3 cut(s) | 619, 639, 689 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 592, 622, 670, 700 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 34, 473, 474, 544, 597, 691 |
| Bse1I | ACTGG | 1 cut(s) | 433 |
| Bse3DI | GCAATG | 1 cut(s) | 592 |
| BseBI | CCWGG | 2 cut(s) | 89, 621 |
| BseDI | CCNNGG | 3 cut(s) | 619, 639, 689 |
| BseGI | GGATG | 1 cut(s) | 521 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 34, 473, 474, 544, 597, 691 |
| BseMI | GCAATG | 1 cut(s) | 592 |
| BseMII | CTCAG | 1 cut(s) | 372 |
| BseNI | ACTGG | 1 cut(s) | 433 |
| BseRI | GAGGAG | 1 cut(s) | 113 |
| BsgI | GTGCAG | 1 cut(s) | 140 |
| BshNI | GGYRCC | 3 cut(s) | 91, 635, 677 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 34, 473, 474, 544, 597, 691 |
| Bsp143I | GATC | 2 cut(s) | 103, 339 |
| Bsp19I | CCATGG | 1 cut(s) | 639 |
| BspACI | CCGC | 4 cut(s) | 316, 487, 535, 556 |
| BspCNI | CTCAG | 1 cut(s) | 373 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 5 cut(s) | 93, 491, 525, 637, 679 |
| BspMI | ACCTGC | 1 cut(s) | 549 |
| BspPI | GGATC | 1 cut(s) | 111 |
| BspQI | GCTCTTC | 1 cut(s) | 207 |
| BspT107I | GGYRCC | 3 cut(s) | 91, 635, 677 |
| BsrBI | CCGCTC | 1 cut(s) | 487 |
| BsrDI | GCAATG | 1 cut(s) | 592 |
| BsrI | ACTGG | 1 cut(s) | 433 |
| BssECI | CCNNGG | 3 cut(s) | 619, 639, 689 |
| BssMI | GATC | 2 cut(s) | 103, 339 |
| BssNI | GRCGYC | 1 cut(s) | 657 |
| BssSI | CACGAG | 1 cut(s) | 401 |
| BssT1I | CCWWGG | 2 cut(s) | 639, 689 |
| Bst2BI | CACGAG | 1 cut(s) | 401 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 621 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 213 |
| Bst6I | CTCTTC | 1 cut(s) | 207 |
| BstACI | GRCGYC | 1 cut(s) | 657 |
| BstBAI | YACGTR | 1 cut(s) | 596 |
| BstDEI | CTNAG | 3 cut(s) | 381, 435, 495 |
| BstDSI | CCRYGG | 1 cut(s) | 639 |
| BstF5I | GGATG | 1 cut(s) | 521 |
| BstHHI | GCGC | 1 cut(s) | 480 |
| BstKTI | GATC | 2 cut(s) | 106, 342 |
| BstMBI | GATC | 2 cut(s) | 103, 339 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 484 |
| BstNI | CCWGG | 2 cut(s) | 89, 621 |
| BstSCI | CCNGG | 3 cut(s) | 87, 99, 619 |
| BstSFI | CTRYAG | 2 cut(s) | 209, 375 |
| BsuI | GTATCC | 1 cut(s) | 626 |
| BtgI | CCRYGG | 1 cut(s) | 639 |
| BtsCI | GGATG | 1 cut(s) | 521 |
| BtsIMutI | CAGTG | 2 cut(s) | 318, 426 |
| BveI | ACCTGC | 1 cut(s) | 549 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 1 cut(s) | 480 |
| Cfr13I | GGNCC | 1 cut(s) | 524 |
| CseI | GACGC | 1 cut(s) | 646 |
| CviAII | CATG | 6 cut(s) | 217, 389, 446, 640, 647, 661 |
| CviJI | RGCY | 6 cut(s) | 18, 200, 256, 358, 380, 644 |
| CviKI_1 | RGCY | 6 cut(s) | 18, 200, 256, 358, 380, 644 |
| DdeI | CTNAG | 3 cut(s) | 381, 435, 495 |
| DpnI | GATC | 2 cut(s) | 105, 341 |
| DpnII | GATC | 2 cut(s) | 103, 339 |
| DraIII | CACNNNGTG | 1 cut(s) | 581 |
| DriI | GACNNNNNGTC | 1 cut(s) | 239 |
| Eam1104I | CTCTTC | 1 cut(s) | 207 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 239 |
| EarI | CTCTTC | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 2 cut(s) | 639, 689 |
| Eco47I | GGWCC | 1 cut(s) | 524 |
| Eco72I | CACGTG | 1 cut(s) | 596 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoRII | CCWGG | 2 cut(s) | 87, 619 |
| EcoT14I | CCWWGG | 2 cut(s) | 639, 689 |
| ErhI | CCWWGG | 2 cut(s) | 639, 689 |
| FaeI | CATG | 6 cut(s) | 220, 392, 449, 643, 650, 664 |
| FatI | CATG | 6 cut(s) | 216, 388, 445, 639, 646, 660 |
| FblI | GTMKAC | 1 cut(s) | 232 |
| FokI | GGATG | 1 cut(s) | 528 |
| FspBI | CTAG | 1 cut(s) | 690 |
| GlaI | GCGC | 1 cut(s) | 479 |
| HapII | CCGG | 1 cut(s) | 101 |
| HgaI | GACGC | 1 cut(s) | 646 |
| HhaI | GCGC | 1 cut(s) | 480 |
| Hin1I | GRCGYC | 1 cut(s) | 657 |
| Hin1II | CATG | 6 cut(s) | 220, 392, 449, 643, 650, 664 |
| Hin6I | GCGC | 1 cut(s) | 478 |
| HinP1I | GCGC | 1 cut(s) | 478 |
| HinfI | GANTC | 2 cut(s) | 8, 116 |
| HpaII | CCGG | 1 cut(s) | 101 |
| Hpy166II | GTNNAC | 1 cut(s) | 233 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 196 |
| Hpy188III | TCNNGA | 3 cut(s) | 403, 420, 446 |
| Hpy8I | GTNNAC | 1 cut(s) | 233 |
| HpyAV | CCTTC | 3 cut(s) | 130, 289, 542 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 213 |
| HpyCH4IV | ACGT | 1 cut(s) | 595 |
| HpyCH4V | TGCA | 3 cut(s) | 157, 310, 569 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 484 |
| HpyF3I | CTNAG | 3 cut(s) | 381, 435, 495 |
| HpySE526I | ACGT | 1 cut(s) | 595 |
| Hsp92I | GRCGYC | 1 cut(s) | 657 |
| Hsp92II | CATG | 6 cut(s) | 220, 392, 449, 643, 650, 664 |
| HspAI | GCGC | 1 cut(s) | 478 |
| Kzo9I | GATC | 2 cut(s) | 103, 339 |
| LguI | GCTCTTC | 1 cut(s) | 207 |
| LmnI | GCTCC | 1 cut(s) | 484 |
| MaeI | CTAG | 1 cut(s) | 690 |
| MaeII | ACGT | 1 cut(s) | 595 |
| MaeIII | GTNAC | 1 cut(s) | 241 |
| MalI | GATC | 2 cut(s) | 105, 341 |
| MbiI | CCGCTC | 1 cut(s) | 487 |
| MboI | GATC | 2 cut(s) | 103, 339 |
| MboII | GAAGA | 1 cut(s) | 194 |
| MluCI | AATT | 6 cut(s) | 190, 258, 323, 409, 415, 454 |
| MlyI | GAGTC | 1 cut(s) | 2 |
| MroXI | GAANNNNTTC | 1 cut(s) | 201 |
| MseI | TTAA | 1 cut(s) | 290 |
| MslI | CAYNNNNRTG | 2 cut(s) | 221, 401 |
| MspI | CCGG | 1 cut(s) | 101 |
| MspR9I | CCNGG | 3 cut(s) | 89, 101, 621 |
| MvaI | CCWGG | 2 cut(s) | 89, 621 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 484 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NcoI | CCATGG | 1 cut(s) | 639 |
| NdeII | GATC | 2 cut(s) | 103, 339 |
| NlaIII | CATG | 6 cut(s) | 220, 392, 449, 643, 650, 664 |
| NlaIV | GGNNCC | 5 cut(s) | 93, 491, 525, 637, 679 |
| NmuCI | GTSAC | 1 cut(s) | 241 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PciSI | GCTCTTC | 1 cut(s) | 207 |
| PdmI | GAANNNNTTC | 1 cut(s) | 201 |
| PfeI | GAWTC | 1 cut(s) | 116 |
| PleI | GAGTC | 1 cut(s) | 2 |
| PmaCI | CACGTG | 1 cut(s) | 596 |
| PmlI | CACGTG | 1 cut(s) | 596 |
| PpsI | GAGTC | 1 cut(s) | 2 |
| Ppu21I | YACGTR | 1 cut(s) | 596 |
| PsiI | TTATAA | 2 cut(s) | 414, 459 |
| Psp6I | CCWGG | 2 cut(s) | 87, 619 |
| PspCI | CACGTG | 1 cut(s) | 596 |
| PspGI | CCWGG | 2 cut(s) | 87, 619 |
| PspN4I | GGNNCC | 5 cut(s) | 93, 491, 525, 637, 679 |
| PspPI | GGNCC | 1 cut(s) | 524 |
| RseI | CAYNNNNRTG | 2 cut(s) | 221, 401 |
| SapI | GCTCTTC | 1 cut(s) | 207 |
| SaqAI | TTAA | 1 cut(s) | 290 |
| Sau3AI | GATC | 2 cut(s) | 103, 339 |
| Sau96I | GGNCC | 1 cut(s) | 524 |
| SchI | GAGTC | 1 cut(s) | 2 |
| ScrFI | CCNGG | 3 cut(s) | 89, 101, 621 |
| SfcI | CTRYAG | 2 cut(s) | 209, 375 |
| SinI | GGWCC | 1 cut(s) | 524 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 221, 401 |
| Sse9I | AATT | 6 cut(s) | 190, 258, 323, 409, 415, 454 |
| SsiI | CCGC | 4 cut(s) | 316, 487, 535, 556 |
| SspI | AATATT | 1 cut(s) | 75 |
| SspMI | CTAG | 1 cut(s) | 690 |
| StyD4I | CCNGG | 3 cut(s) | 87, 99, 619 |
| StyI | CCWWGG | 2 cut(s) | 639, 689 |
| TaaI | ACNGT | 2 cut(s) | 32, 213 |
| TaiI | ACGT | 1 cut(s) | 598 |
| TaqI | TCGA | 1 cut(s) | 114 |
| TasI | AATT | 6 cut(s) | 190, 258, 323, 409, 415, 454 |
| TfiI | GAWTC | 1 cut(s) | 116 |
| Tru1I | TTAA | 1 cut(s) | 290 |
| Tru9I | TTAA | 1 cut(s) | 290 |
| TscAI | CASTG | 2 cut(s) | 325, 433 |
| TseFI | GTSAC | 1 cut(s) | 241 |
| Tsp45I | GTSAC | 1 cut(s) | 241 |
| TspDTI | ATGAA | 3 cut(s) | 341, 434, 477 |
| TspRI | CASTG | 2 cut(s) | 325, 433 |
| VpaK11BI | GGWCC | 1 cut(s) | 524 |
| XapI | RAATTY | 1 cut(s) | 323 |
| XmaJI | CCTAGG | 1 cut(s) | 689 |
| XmiI | GTMKAC | 1 cut(s) | 232 |
| XmnI | GAANNNNTTC | 1 cut(s) | 201 |
| XspI | CTAG | 1 cut(s) | 690 |