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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 783, 828 |
| Acc65I | GGTACC | 1 cut(s) | 869 |
| AccB1I | GGYRCC | 2 cut(s) | 869, 1036 |
| AccBSI | CCGCTC | 1 cut(s) | 867 |
| AciI | CCGC | 4 cut(s) | 867, 915, 949, 1060 |
| AclWI | GGATC | 1 cut(s) | 716 |
| AcuI | CTGAAG | 1 cut(s) | 711 |
| AcvI | CACGTG | 2 cut(s) | 958, 976 |
| AcyI | GRCGYC | 2 cut(s) | 190, 388 |
| AdeI | CACNNNGTG | 2 cut(s) | 961, 1075 |
| AfaI | GTAC | 2 cut(s) | 688, 871 |
| AfeI | AGCGCT | 2 cut(s) | 258, 456 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 64, 842, 843, 880, 924, 977, 1050 |
| AflIII | ACRYGT | 2 cut(s) | 955, 973 |
| AgsI | TTSAA | 9 cut(s) | 96, 217, 307, 314, 343, 505, 512, 541, 789 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 343, 541 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 255, 287, 453, 485 |
| AluBI | AGCT | 4 cut(s) | 247, 445, 727, 749 |
| AluI | AGCT | 4 cut(s) | 247, 445, 727, 749 |
| Alw21I | GWGCWC | 2 cut(s) | 1071, 1080 |
| Alw44I | GTGCAC | 2 cut(s) | 1067, 1076 |
| AlwI | GGATC | 1 cut(s) | 716 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 456 |
| AoxI | GGCC | 2 cut(s) | 791, 903 |
| ApaI | GGGCCC | 1 cut(s) | 907 |
| ApaLI | GTGCAC | 2 cut(s) | 1067, 1076 |
| Asp718I | GGTACC | 1 cut(s) | 869 |
| AspA2I | CCTAGG | 2 cut(s) | 14, 1048 |
| AspLEI | GCGC | 7 cut(s) | 259, 270, 330, 457, 528, 849, 860 |
| AspS9I | GGNCC | 3 cut(s) | 792, 903, 904 |
| AvrII | CCTAGG | 2 cut(s) | 14, 1048 |
| BaeGI | GKGCMC | 3 cut(s) | 907, 1071, 1080 |
| BanI | GGYRCC | 2 cut(s) | 869, 1036 |
| BanII | GRGCYC | 1 cut(s) | 907 |
| BauI | CACGAG | 2 cut(s) | 712, 770 |
| BbrPI | CACGTG | 2 cut(s) | 958, 976 |
| BbsI | GAAGAC | 1 cut(s) | 641 |
| Bbv12I | GWGCWC | 2 cut(s) | 1071, 1080 |
| BccI | CCATC | 1 cut(s) | 93 |
| BceAI | ACGGC | 1 cut(s) | 989 |
| BciVI | GTATCC | 2 cut(s) | 945, 1006 |
| BfaI | CTAG | 5 cut(s) | 15, 260, 458, 1001, 1049 |
| BfmI | CTRYAG | 1 cut(s) | 744 |
| BfoI | RGCGCY | 2 cut(s) | 260, 458 |
| BfuI | GTATCC | 2 cut(s) | 945, 1006 |
| BlnI | CCTAGG | 2 cut(s) | 14, 1048 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 343, 541 |
| BmgT120I | GGNCC | 3 cut(s) | 792, 903, 904 |
| BmiI | GGNNCC | 4 cut(s) | 871, 905, 1038, 1055 |
| BmsI | GCATC | 4 cut(s) | 174, 226, 372, 424 |
| BpiI | GAAGAC | 1 cut(s) | 641 |
| BpuEI | CTTGAG | 2 cut(s) | 153, 351 |
| BsaAI | YACGTR | 2 cut(s) | 958, 976 |
| BsaHI | GRCGYC | 2 cut(s) | 190, 388 |
| BsaJI | CCNNGG | 2 cut(s) | 14, 1048 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 407, 437, 972, 1002, 1029, 1059 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 64, 842, 843, 880, 924, 977, 1050 |
| Bse3DI | GCAATG | 2 cut(s) | 283, 481 |
| BseDI | CCNNGG | 2 cut(s) | 14, 1048 |
| BseGI | GGATG | 2 cut(s) | 241, 439 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 64, 842, 843, 880, 924, 977, 1050 |
| BseMI | GCAATG | 2 cut(s) | 283, 481 |
| BseMII | CTCAG | 3 cut(s) | 223, 421, 741 |
| BseRI | GAGGAG | 2 cut(s) | 284, 482 |
| BseSI | GKGCMC | 3 cut(s) | 907, 1071, 1080 |
| BshFI | GGCC | 2 cut(s) | 793, 905 |
| BshNI | GGYRCC | 2 cut(s) | 869, 1036 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1071, 1080 |
| BslFI | GGGAC | 2 cut(s) | 899, 908 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 64, 842, 843, 880, 924, 977, 1050 |
| BsmFI | GGGAC | 2 cut(s) | 899, 908 |
| BsnI | GGCC | 2 cut(s) | 793, 905 |
| Bsp120I | GGGCCC | 1 cut(s) | 903 |
| Bsp1286I | GDGCHC | 3 cut(s) | 907, 1071, 1080 |
| Bsp143I | GATC | 4 cut(s) | 133, 228, 426, 708 |
| BspACI | CCGC | 4 cut(s) | 867, 915, 949, 1060 |
| BspANI | GGCC | 2 cut(s) | 793, 905 |
| BspCNI | CTCAG | 3 cut(s) | 222, 420, 742 |
| BspHI | TCATGA | 1 cut(s) | 814 |
| BspLI | GGNNCC | 4 cut(s) | 871, 905, 1038, 1055 |
| BspPI | GGATC | 1 cut(s) | 716 |
| BspQI | GCTCTTC | 2 cut(s) | 456, 576 |
| BspT107I | GGYRCC | 2 cut(s) | 869, 1036 |
| BsrBI | CCGCTC | 1 cut(s) | 867 |
| BsrDI | GCAATG | 2 cut(s) | 283, 481 |
| BssECI | CCNNGG | 2 cut(s) | 14, 1048 |
| BssMI | GATC | 4 cut(s) | 133, 228, 426, 708 |
| BssNI | GRCGYC | 2 cut(s) | 190, 388 |
| BssSI | CACGAG | 2 cut(s) | 712, 770 |
| BssT1I | CCWWGG | 2 cut(s) | 14, 1048 |
| Bst2BI | CACGAG | 2 cut(s) | 712, 770 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 686 |
| Bst6I | CTCTTC | 2 cut(s) | 456, 576 |
| BstACI | GRCGYC | 2 cut(s) | 190, 388 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1075 |
| BstBAI | YACGTR | 2 cut(s) | 958, 976 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 363 |
| BstDEI | CTNAG | 5 cut(s) | 209, 407, 750, 804, 875 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 241, 439 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 458 |
| BstHHI | GCGC | 7 cut(s) | 259, 270, 330, 457, 528, 849, 860 |
| BstKTI | GATC | 4 cut(s) | 136, 231, 429, 711 |
| BstMBI | GATC | 4 cut(s) | 133, 228, 426, 708 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 265, 463, 855, 864, 1075 |
| BstNSI | RCATGY | 2 cut(s) | 167, 365 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSFI | CTRYAG | 1 cut(s) | 744 |
| BstSLI | GKGCMC | 3 cut(s) | 907, 1071, 1080 |
| BstV2I | GAAGAC | 1 cut(s) | 641 |
| BsuI | GTATCC | 2 cut(s) | 945, 1006 |
| BsuRI | GGCC | 2 cut(s) | 793, 905 |
| BtsCI | GGATG | 2 cut(s) | 241, 439 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 363 |
| CciI | TCATGA | 1 cut(s) | 814 |
| CfoI | GCGC | 7 cut(s) | 259, 270, 330, 457, 528, 849, 860 |
| Cfr13I | GGNCC | 3 cut(s) | 792, 903, 904 |
| CseI | GACGC | 2 cut(s) | 198, 396 |
| Csp6I | GTAC | 2 cut(s) | 687, 870 |
| CviAII | CATG | 7 cut(s) | 31, 164, 362, 586, 758, 815, 889 |
| CviQI | GTAC | 2 cut(s) | 687, 870 |
| DdeI | CTNAG | 5 cut(s) | 209, 407, 750, 804, 875 |
| DpnI | GATC | 4 cut(s) | 135, 230, 428, 710 |
| DpnII | GATC | 4 cut(s) | 133, 228, 426, 708 |
| DraIII | CACNNNGTG | 2 cut(s) | 961, 1075 |
| DriI | GACNNNNNGTC | 2 cut(s) | 343, 541 |
| Eam1104I | CTCTTC | 2 cut(s) | 456, 576 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 343, 541 |
| EarI | CTCTTC | 2 cut(s) | 456, 576 |
| Eco130I | CCWWGG | 2 cut(s) | 14, 1048 |
| Eco24I | GRGCYC | 1 cut(s) | 907 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 456 |
| Eco57I | CTGAAG | 1 cut(s) | 711 |
| Eco72I | CACGTG | 2 cut(s) | 958, 976 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 2 cut(s) | 14, 1048 |
| EcoT38I | GRGCYC | 1 cut(s) | 907 |
| ErhI | CCWWGG | 2 cut(s) | 14, 1048 |
| FaeI | CATG | 7 cut(s) | 34, 167, 365, 589, 761, 818, 892 |
| FaqI | GGGAC | 2 cut(s) | 899, 908 |
| FatI | CATG | 7 cut(s) | 30, 163, 361, 585, 757, 814, 888 |
| FauI | CCCGC | 1 cut(s) | 1067 |
| FauNDI | CATATG | 2 cut(s) | 195, 393 |
| FokI | GGATG | 2 cut(s) | 248, 446 |
| FriOI | GRGCYC | 1 cut(s) | 907 |
| FspBI | CTAG | 5 cut(s) | 15, 260, 458, 1001, 1049 |
| GlaI | GCGC | 7 cut(s) | 258, 269, 329, 456, 527, 848, 859 |
| HaeII | RGCGCY | 2 cut(s) | 260, 458 |
| HaeIII | GGCC | 2 cut(s) | 793, 905 |
| HgaI | GACGC | 2 cut(s) | 198, 396 |
| HhaI | GCGC | 7 cut(s) | 259, 270, 330, 457, 528, 849, 860 |
| Hin1I | GRCGYC | 2 cut(s) | 190, 388 |
| Hin1II | CATG | 7 cut(s) | 34, 167, 365, 589, 761, 818, 892 |
| Hin6I | GCGC | 7 cut(s) | 257, 268, 328, 455, 526, 847, 858 |
| HinP1I | GCGC | 7 cut(s) | 257, 268, 328, 455, 526, 847, 858 |
| HincII | GTYRAC | 2 cut(s) | 337, 348 |
| HindII | GTYRAC | 2 cut(s) | 337, 348 |
| HinfI | GANTC | 5 cut(s) | 38, 287, 485, 594, 637 |
| Hpy166II | GTNNAC | 4 cut(s) | 337, 348, 1069, 1078 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 212, 410, 565 |
| Hpy188III | TCNNGA | 5 cut(s) | 181, 379, 712, 772, 815 |
| Hpy8I | GTNNAC | 4 cut(s) | 337, 348, 1069, 1078 |
| Hpy99I | CGWCG | 2 cut(s) | 192, 390 |
| HpyAV | CCTTC | 4 cut(s) | 301, 499, 658, 922 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 686 |
| HpyCH4IV | ACGT | 5 cut(s) | 897, 957, 975, 1065, 1074 |
| HpyCH4V | TGCA | 7 cut(s) | 206, 239, 437, 833, 938, 1069, 1078 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 265, 463, 855, 864, 1075 |
| HpyF3I | CTNAG | 5 cut(s) | 209, 407, 750, 804, 875 |
| HpySE526I | ACGT | 5 cut(s) | 897, 957, 975, 1065, 1074 |
| Hsp92I | GRCGYC | 2 cut(s) | 190, 388 |
| Hsp92II | CATG | 7 cut(s) | 34, 167, 365, 589, 761, 818, 892 |
| HspAI | GCGC | 7 cut(s) | 257, 268, 328, 455, 526, 847, 858 |
| KpnI | GGTACC | 1 cut(s) | 873 |
| Kzo9I | GATC | 4 cut(s) | 133, 228, 426, 708 |
| LguI | GCTCTTC | 2 cut(s) | 456, 576 |
| LmnI | GCTCC | 1 cut(s) | 864 |
| LpnPI | CCDG | 6 cut(s) | 30, 144, 312, 510, 621, 687 |
| LweI | GCATC | 4 cut(s) | 174, 226, 372, 424 |
| MaeI | CTAG | 5 cut(s) | 15, 260, 458, 1001, 1049 |
| MaeII | ACGT | 5 cut(s) | 897, 957, 975, 1065, 1074 |
| MaeIII | GTNAC | 2 cut(s) | 67, 610 |
| MalI | GATC | 4 cut(s) | 135, 230, 428, 710 |
| MbiI | CCGCTC | 1 cut(s) | 867 |
| MboI | GATC | 4 cut(s) | 133, 228, 426, 708 |
| MboII | GAAGA | 3 cut(s) | 473, 563, 646 |
| MhlI | GDGCHC | 3 cut(s) | 907, 1071, 1080 |
| MluCI | AATT | 6 cut(s) | 559, 627, 778, 784, 823, 1084 |
| MlyI | GAGTC | 2 cut(s) | 32, 631 |
| MseI | TTAA | 1 cut(s) | 1087 |
| MslI | CAYNNNNRTG | 1 cut(s) | 770 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 265, 463, 855, 864, 1075 |
| NdeI | CATATG | 2 cut(s) | 195, 393 |
| NdeII | GATC | 4 cut(s) | 133, 228, 426, 708 |
| NlaIII | CATG | 7 cut(s) | 34, 167, 365, 589, 761, 818, 892 |
| NlaIV | GGNNCC | 4 cut(s) | 871, 905, 1038, 1055 |
| NmuCI | GTSAC | 1 cut(s) | 610 |
| NspI | RCATGY | 2 cut(s) | 167, 365 |
| PaeI | GCATGC | 2 cut(s) | 167, 365 |
| PagI | TCATGA | 1 cut(s) | 814 |
| PciSI | GCTCTTC | 2 cut(s) | 456, 576 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1071 |
| PfeI | GAWTC | 3 cut(s) | 287, 485, 594 |
| PleI | GAGTC | 2 cut(s) | 32, 631 |
| PmaCI | CACGTG | 2 cut(s) | 958, 976 |
| PmlI | CACGTG | 2 cut(s) | 958, 976 |
| PpsI | GAGTC | 2 cut(s) | 32, 631 |
| Ppu21I | YACGTR | 2 cut(s) | 958, 976 |
| PsiI | TTATAA | 2 cut(s) | 783, 828 |
| PspCI | CACGTG | 2 cut(s) | 958, 976 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 4 cut(s) | 871, 905, 1038, 1055 |
| PspOMI | GGGCCC | 1 cut(s) | 903 |
| PspPI | GGNCC | 3 cut(s) | 792, 903, 904 |
| RsaI | GTAC | 2 cut(s) | 688, 871 |
| RsaNI | GTAC | 2 cut(s) | 687, 870 |
| RseI | CAYNNNNRTG | 1 cut(s) | 770 |
| SapI | GCTCTTC | 2 cut(s) | 456, 576 |
| SaqAI | TTAA | 1 cut(s) | 1087 |
| Sau3AI | GATC | 4 cut(s) | 133, 228, 426, 708 |
| Sau96I | GGNCC | 3 cut(s) | 792, 903, 904 |
| SchI | GAGTC | 2 cut(s) | 32, 631 |
| SduI | GDGCHC | 3 cut(s) | 907, 1071, 1080 |
| SfaNI | GCATC | 4 cut(s) | 174, 226, 372, 424 |
| SfcI | CTRYAG | 1 cut(s) | 744 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 770 |
| SmlI | CTYRAG | 2 cut(s) | 168, 366 |
| SmoI | CTYRAG | 2 cut(s) | 168, 366 |
| SphI | GCATGC | 2 cut(s) | 167, 365 |
| Sse9I | AATT | 6 cut(s) | 559, 627, 778, 784, 823, 1084 |
| SsiI | CCGC | 4 cut(s) | 867, 915, 949, 1060 |
| SspI | AATATT | 2 cut(s) | 105, 736 |
| SspMI | CTAG | 5 cut(s) | 15, 260, 458, 1001, 1049 |
| StyI | CCWWGG | 2 cut(s) | 14, 1048 |
| TaaI | ACNGT | 2 cut(s) | 62, 686 |
| TaiI | ACGT | 5 cut(s) | 900, 960, 978, 1068, 1077 |
| TaqI | TCGA | 4 cut(s) | 5, 21, 227, 425 |
| TasI | AATT | 6 cut(s) | 559, 627, 778, 784, 823, 1084 |
| TfiI | GAWTC | 3 cut(s) | 287, 485, 594 |
| Tru1I | TTAA | 1 cut(s) | 1087 |
| Tru9I | TTAA | 1 cut(s) | 1087 |
| TseFI | GTSAC | 1 cut(s) | 610 |
| Tsp45I | GTSAC | 1 cut(s) | 610 |
| TspDTI | ATGAA | 3 cut(s) | 24, 710, 803 |
| TspGWI | ACGGA | 1 cut(s) | 721 |
| VneI | GTGCAC | 2 cut(s) | 1067, 1076 |
| XceI | RCATGY | 2 cut(s) | 167, 365 |
| XmaJI | CCTAGG | 2 cut(s) | 14, 1048 |
| XspI | CTAG | 5 cut(s) | 15, 260, 458, 1001, 1049 |