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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 628 |
| AcoI | YGGCCR | 3 cut(s) | 36, 56, 321 |
| AcsI | RAATTY | 2 cut(s) | 351, 695 |
| AfaI | GTAC | 1 cut(s) | 515 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 61, 103 |
| AgeI | ACCGGT | 1 cut(s) | 235 |
| AgsI | TTSAA | 2 cut(s) | 643, 683 |
| AjiI | CACGTC | 1 cut(s) | 196 |
| AluBI | AGCT | 3 cut(s) | 68, 829, 839 |
| AluI | AGCT | 3 cut(s) | 68, 829, 839 |
| Alw21I | GWGCWC | 1 cut(s) | 831 |
| Alw26I | GTCTC | 1 cut(s) | 559 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 425 |
| AoxI | GGCC | 4 cut(s) | 36, 56, 159, 321 |
| ApeKI | GCWGC | 3 cut(s) | 17, 82, 446 |
| ApoI | RAATTY | 2 cut(s) | 351, 695 |
| AsiGI | ACCGGT | 1 cut(s) | 235 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 672 |
| AspS9I | GGNCC | 1 cut(s) | 160 |
| AsuC2I | CCSGG | 1 cut(s) | 309 |
| BaeGI | GKGCMC | 1 cut(s) | 314 |
| BanII | GRGCYC | 1 cut(s) | 831 |
| BbsI | GAAGAC | 2 cut(s) | 540, 743 |
| Bbv12I | GWGCWC | 1 cut(s) | 831 |
| BbvI | GCAGC | 3 cut(s) | 29, 94, 458 |
| BccI | CCATC | 3 cut(s) | 482, 609, 763 |
| BcnI | CCSGG | 1 cut(s) | 309 |
| BcoDI | GTCTC | 1 cut(s) | 559 |
| BfaI | CTAG | 1 cut(s) | 605 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 455 |
| BisI | GCNGC | 3 cut(s) | 18, 83, 447 |
| BlsI | GCNGC | 3 cut(s) | 19, 84, 448 |
| Bme1390I | CCNGG | 1 cut(s) | 309 |
| BmgBI | CACGTC | 1 cut(s) | 196 |
| BmgT120I | GGNCC | 1 cut(s) | 160 |
| BmrFI | CCNGG | 1 cut(s) | 309 |
| BpiI | GAAGAC | 2 cut(s) | 540, 743 |
| BpmI | CTGGAG | 1 cut(s) | 494 |
| BpuMI | CCSGG | 1 cut(s) | 309 |
| BsaI | GGTCTC | 1 cut(s) | 559 |
| BsaJI | CCNNGG | 1 cut(s) | 205 |
| BsaWI | WCCGGW | 3 cut(s) | 61, 235, 259 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 61, 103 |
| Bse118I | RCCGGY | 3 cut(s) | 34, 54, 235 |
| Bse1I | ACTGG | 2 cut(s) | 108, 511 |
| BseDI | CCNNGG | 1 cut(s) | 205 |
| BseGI | GGATG | 4 cut(s) | 381, 477, 505, 867 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 61, 103 |
| BseNI | ACTGG | 2 cut(s) | 108, 511 |
| BseSI | GKGCMC | 1 cut(s) | 314 |
| BseX3I | CGGCCG | 1 cut(s) | 36 |
| BseXI | GCAGC | 3 cut(s) | 29, 94, 458 |
| BseYI | CCCAGC | 1 cut(s) | 539 |
| Bsh1285I | CGRYCG | 1 cut(s) | 39 |
| BshFI | GGCC | 4 cut(s) | 38, 58, 161, 323 |
| BshTI | ACCGGT | 1 cut(s) | 235 |
| BsiEI | CGRYCG | 1 cut(s) | 39 |
| BsiHKAI | GWGCWC | 1 cut(s) | 831 |
| BsiSI | CCGG | 9 cut(s) | 35, 39, 55, 62, 236, 248, 260, 308, 358 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 61, 103 |
| BsmAI | GTCTC | 1 cut(s) | 559 |
| BsnI | GGCC | 4 cut(s) | 38, 58, 161, 323 |
| Bso31I | GGTCTC | 1 cut(s) | 559 |
| Bsp1286I | GDGCHC | 2 cut(s) | 314, 831 |
| Bsp143I | GATC | 2 cut(s) | 346, 711 |
| BspACI | CCGC | 1 cut(s) | 628 |
| BspANI | GGCC | 4 cut(s) | 38, 58, 161, 323 |
| BspHI | TCATGA | 1 cut(s) | 823 |
| BspTNI | GGTCTC | 1 cut(s) | 559 |
| BsrFI | RCCGGY | 3 cut(s) | 34, 54, 235 |
| BsrI | ACTGG | 2 cut(s) | 108, 511 |
| BssAI | RCCGGY | 3 cut(s) | 34, 54, 235 |
| BssECI | CCNNGG | 1 cut(s) | 205 |
| BssMI | GATC | 2 cut(s) | 346, 711 |
| BssT1I | CCWWGG | 1 cut(s) | 205 |
| Bst4CI | ACNGT | 2 cut(s) | 228, 884 |
| BstC8I | GCNNGC | 1 cut(s) | 545 |
| BstDEI | CTNAG | 2 cut(s) | 451, 777 |
| BstF5I | GGATG | 4 cut(s) | 381, 477, 505, 867 |
| BstKTI | GATC | 2 cut(s) | 349, 714 |
| BstMAI | GTCTC | 1 cut(s) | 559 |
| BstMBI | GATC | 2 cut(s) | 346, 711 |
| BstMCI | CGRYCG | 1 cut(s) | 39 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 198, 220, 429, 443, 455, 464 |
| BstSCI | CCNGG | 1 cut(s) | 307 |
| BstSLI | GKGCMC | 1 cut(s) | 314 |
| BstV1I | GCAGC | 3 cut(s) | 29, 94, 458 |
| BstV2I | GAAGAC | 2 cut(s) | 540, 743 |
| BstZI | CGGCCG | 1 cut(s) | 36 |
| BsuRI | GGCC | 4 cut(s) | 38, 58, 161, 323 |
| BtgZI | GCGATG | 1 cut(s) | 737 |
| BtrI | CACGTC | 1 cut(s) | 196 |
| BtsCI | GGATG | 4 cut(s) | 381, 477, 505, 867 |
| BtsI | GCAGTG | 2 cut(s) | 163, 187 |
| BtsIMutI | CAGTG | 2 cut(s) | 163, 187 |
| Cac8I | GCNNGC | 1 cut(s) | 545 |
| CaiI | CAGNNNCTG | 1 cut(s) | 425 |
| CciI | TCATGA | 1 cut(s) | 823 |
| Cfr10I | RCCGGY | 3 cut(s) | 34, 54, 235 |
| Cfr13I | GGNCC | 1 cut(s) | 160 |
| Csp6I | GTAC | 1 cut(s) | 514 |
| CspAI | ACCGGT | 1 cut(s) | 235 |
| CviAII | CATG | 2 cut(s) | 824, 860 |
| CviQI | GTAC | 1 cut(s) | 514 |
| DdeI | CTNAG | 2 cut(s) | 451, 777 |
| DpnI | GATC | 2 cut(s) | 348, 713 |
| DpnII | GATC | 2 cut(s) | 346, 711 |
| EaeI | YGGCCR | 3 cut(s) | 36, 56, 321 |
| EagI | CGGCCG | 1 cut(s) | 36 |
| Ecl136II | GAGCTC | 1 cut(s) | 829 |
| EclXI | CGGCCG | 1 cut(s) | 36 |
| Eco130I | CCWWGG | 1 cut(s) | 205 |
| Eco24I | GRGCYC | 1 cut(s) | 831 |
| Eco31I | GGTCTC | 1 cut(s) | 559 |
| Eco52I | CGGCCG | 1 cut(s) | 36 |
| Eco53kI | GAGCTC | 1 cut(s) | 829 |
| EcoICRI | GAGCTC | 1 cut(s) | 829 |
| EcoT14I | CCWWGG | 1 cut(s) | 205 |
| EcoT38I | GRGCYC | 1 cut(s) | 831 |
| ErhI | CCWWGG | 1 cut(s) | 205 |
| FaeI | CATG | 2 cut(s) | 827, 863 |
| FatI | CATG | 2 cut(s) | 823, 859 |
| FauNDI | CATATG | 1 cut(s) | 495 |
| Fnu4HI | GCNGC | 3 cut(s) | 18, 83, 447 |
| FokI | GGATG | 4 cut(s) | 388, 464, 512, 854 |
| FriOI | GRGCYC | 1 cut(s) | 831 |
| Fsp4HI | GCNGC | 3 cut(s) | 18, 83, 447 |
| FspBI | CTAG | 1 cut(s) | 605 |
| GluI | GCNGC | 3 cut(s) | 18, 83, 447 |
| GsaI | CCCAGC | 1 cut(s) | 543 |
| GsuI | CTGGAG | 1 cut(s) | 494 |
| HaeIII | GGCC | 4 cut(s) | 38, 58, 161, 323 |
| HapII | CCGG | 9 cut(s) | 35, 39, 55, 62, 236, 248, 260, 308, 358 |
| Hin1II | CATG | 2 cut(s) | 827, 863 |
| HincII | GTYRAC | 1 cut(s) | 241 |
| HindII | GTYRAC | 1 cut(s) | 241 |
| HindIII | AAGCTT | 1 cut(s) | 66 |
| HinfI | GANTC | 8 cut(s) | 4, 503, 587, 683, 739, 789, 810, 894 |
| HpaII | CCGG | 9 cut(s) | 35, 39, 55, 62, 236, 248, 260, 308, 358 |
| Hpy166II | GTNNAC | 1 cut(s) | 241 |
| Hpy188I | TCNGA | 6 cut(s) | 182, 273, 333, 346, 427, 667 |
| Hpy188III | TCNNGA | 5 cut(s) | 8, 599, 653, 824, 891 |
| Hpy8I | GTNNAC | 1 cut(s) | 241 |
| Hpy99I | CGWCG | 1 cut(s) | 277 |
| HpyAV | CCTTC | 1 cut(s) | 132 |
| HpyCH4III | ACNGT | 2 cut(s) | 228, 884 |
| HpyCH4IV | ACGT | 1 cut(s) | 195 |
| HpyCH4V | TGCA | 2 cut(s) | 764, 803 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 198, 220, 429, 443, 455, 464 |
| HpyF3I | CTNAG | 2 cut(s) | 451, 777 |
| HpySE526I | ACGT | 1 cut(s) | 195 |
| Hsp92II | CATG | 2 cut(s) | 827, 863 |
| Kzo9I | GATC | 2 cut(s) | 346, 711 |
| LmnI | GCTCC | 2 cut(s) | 513, 836 |
| Lsp1109I | GCAGC | 3 cut(s) | 29, 94, 458 |
| MaeI | CTAG | 1 cut(s) | 605 |
| MaeII | ACGT | 1 cut(s) | 195 |
| MaeIII | GTNAC | 3 cut(s) | 380, 584, 796 |
| MalI | GATC | 2 cut(s) | 348, 713 |
| MboI | GATC | 2 cut(s) | 346, 711 |
| MboII | GAAGA | 5 cut(s) | 129, 542, 545, 748, 889 |
| MfeI | CAATTG | 1 cut(s) | 407 |
| MhlI | GDGCHC | 2 cut(s) | 314, 831 |
| MluCI | AATT | 5 cut(s) | 351, 392, 407, 695, 886 |
| MlyI | GAGTC | 3 cut(s) | 13, 581, 733 |
| MmeI | TCCRAC | 3 cut(s) | 296, 356, 880 |
| MnlI | CCTC | 4 cut(s) | 151, 366, 448, 635 |
| MroXI | GAANNNNTTC | 1 cut(s) | 672 |
| MseI | TTAA | 1 cut(s) | 689 |
| MslI | CAYNNNNRTG | 3 cut(s) | 482, 498, 872 |
| MspI | CCGG | 9 cut(s) | 35, 39, 55, 62, 236, 248, 260, 308, 358 |
| MspR9I | CCNGG | 1 cut(s) | 309 |
| MunI | CAATTG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 198, 220, 429, 443, 455, 464 |
| NciI | CCSGG | 1 cut(s) | 309 |
| NdeI | CATATG | 1 cut(s) | 495 |
| NdeII | GATC | 2 cut(s) | 346, 711 |
| NlaIII | CATG | 2 cut(s) | 827, 863 |
| NmuCI | GTSAC | 1 cut(s) | 584 |
| PagI | TCATGA | 1 cut(s) | 823 |
| PdmI | GAANNNNTTC | 1 cut(s) | 672 |
| PfeI | GAWTC | 5 cut(s) | 503, 683, 789, 810, 894 |
| PinAI | ACCGGT | 1 cut(s) | 235 |
| PkrI | GCNGC | 3 cut(s) | 19, 84, 448 |
| PleI | GAGTC | 3 cut(s) | 12, 581, 733 |
| PpsI | GAGTC | 3 cut(s) | 12, 581, 733 |
| Psp124BI | GAGCTC | 1 cut(s) | 831 |
| PspFI | CCCAGC | 1 cut(s) | 539 |
| PspPI | GGNCC | 1 cut(s) | 160 |
| PstNI | CAGNNNCTG | 1 cut(s) | 425 |
| RsaI | GTAC | 1 cut(s) | 515 |
| RsaNI | GTAC | 1 cut(s) | 514 |
| RseI | CAYNNNNRTG | 3 cut(s) | 482, 498, 872 |
| SacI | GAGCTC | 1 cut(s) | 831 |
| SaqAI | TTAA | 1 cut(s) | 689 |
| SatI | GCNGC | 3 cut(s) | 18, 83, 447 |
| Sau3AI | GATC | 2 cut(s) | 346, 711 |
| Sau96I | GGNCC | 1 cut(s) | 160 |
| SchI | GAGTC | 3 cut(s) | 13, 581, 733 |
| ScrFI | CCNGG | 1 cut(s) | 309 |
| SduI | GDGCHC | 2 cut(s) | 314, 831 |
| SetI | ASST | 9 cut(s) | 48, 70, 198, 367, 387, 606, 821, 831, 841 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 482, 498, 872 |
| Sse9I | AATT | 5 cut(s) | 351, 392, 407, 695, 886 |
| SsiI | CCGC | 1 cut(s) | 628 |
| SspI | AATATT | 1 cut(s) | 90 |
| SspMI | CTAG | 1 cut(s) | 605 |
| SstI | GAGCTC | 1 cut(s) | 831 |
| StyD4I | CCNGG | 1 cut(s) | 307 |
| StyI | CCWWGG | 1 cut(s) | 205 |
| TaaI | ACNGT | 2 cut(s) | 228, 884 |
| TaiI | ACGT | 1 cut(s) | 198 |
| TaqI | TCGA | 3 cut(s) | 371, 787, 890 |
| TasI | AATT | 5 cut(s) | 351, 392, 407, 695, 886 |
| TfiI | GAWTC | 5 cut(s) | 503, 683, 789, 810, 894 |
| Tru1I | TTAA | 1 cut(s) | 689 |
| Tru9I | TTAA | 1 cut(s) | 689 |
| TscAI | CASTG | 2 cut(s) | 170, 194 |
| TseFI | GTSAC | 1 cut(s) | 584 |
| TseI | GCWGC | 3 cut(s) | 17, 82, 446 |
| Tsp45I | GTSAC | 1 cut(s) | 584 |
| TspDTI | ATGAA | 6 cut(s) | 60, 539, 543, 707, 812, 857 |
| TspGWI | ACGGA | 1 cut(s) | 572 |
| TspRI | CASTG | 2 cut(s) | 170, 194 |
| XapI | RAATTY | 2 cut(s) | 351, 695 |
| XmnI | GAANNNNTTC | 1 cut(s) | 672 |
| XspI | CTAG | 1 cut(s) | 605 |