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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 420 |
| AccII | CGCG | 3 cut(s) | 328, 330, 990 |
| AciI | CCGC | 3 cut(s) | 230, 326, 372 |
| AclWI | GGATC | 4 cut(s) | 82, 95, 527, 540 |
| AcoI | YGGCCR | 3 cut(s) | 3, 163, 435 |
| AcuI | CTGAAG | 1 cut(s) | 186 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 24, 25, 120, 440, 1001 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 416 |
| AjnI | CCWGG | 2 cut(s) | 528, 552 |
| AluBI | AGCT | 4 cut(s) | 15, 578, 584, 883 |
| AluI | AGCT | 4 cut(s) | 15, 578, 584, 883 |
| Alw21I | GWGCWC | 2 cut(s) | 336, 885 |
| Alw26I | GTCTC | 2 cut(s) | 715, 940 |
| AlwI | GGATC | 4 cut(s) | 82, 95, 527, 540 |
| AoxI | GGCC | 7 cut(s) | 3, 143, 163, 354, 435, 516, 1004 |
| ApaI | GGGCCC | 1 cut(s) | 1008 |
| ApeKI | GCWGC | 2 cut(s) | 316, 602 |
| AspLEI | GCGC | 2 cut(s) | 330, 992 |
| AspS9I | GGNCC | 2 cut(s) | 1004, 1005 |
| AsuHPI | GGTGA | 3 cut(s) | 269, 420, 478 |
| AsuNHI | GCTAGC | 1 cut(s) | 238 |
| BaeGI | GKGCMC | 1 cut(s) | 1008 |
| BamHI | GGATCC | 2 cut(s) | 87, 532 |
| BanII | GRGCYC | 3 cut(s) | 115, 885, 1008 |
| BbsI | GAAGAC | 1 cut(s) | 696 |
| Bbv12I | GWGCWC | 2 cut(s) | 336, 885 |
| BbvI | GCAGC | 2 cut(s) | 303, 614 |
| BccI | CCATC | 1 cut(s) | 817 |
| BciT130I | CCWGG | 2 cut(s) | 530, 554 |
| BcoDI | GTCTC | 2 cut(s) | 715, 940 |
| BfaI | CTAG | 4 cut(s) | 239, 549, 761, 971 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 611 |
| BisI | GCNGC | 2 cut(s) | 317, 603 |
| BlsI | GCNGC | 2 cut(s) | 318, 604 |
| Bme1390I | CCNGG | 2 cut(s) | 530, 554 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 416 |
| BmgT120I | GGNCC | 2 cut(s) | 1004, 1005 |
| BmiI | GGNNCC | 5 cut(s) | 89, 112, 534, 1006, 1007 |
| BmrFI | CCNGG | 2 cut(s) | 530, 554 |
| BmrI | ACTGGG | 1 cut(s) | 37 |
| BmsI | GCATC | 2 cut(s) | 517, 761 |
| BmtI | GCTAGC | 1 cut(s) | 242 |
| BmuI | ACTGGG | 1 cut(s) | 37 |
| BpiI | GAAGAC | 1 cut(s) | 696 |
| BpmI | CTGGAG | 2 cut(s) | 462, 650 |
| BpuEI | CTTGAG | 3 cut(s) | 497, 563, 564 |
| BsaAI | YACGTR | 1 cut(s) | 385 |
| BsaI | GGTCTC | 1 cut(s) | 715 |
| BsaJI | CCNNGG | 2 cut(s) | 253, 606 |
| BsaWI | WCCGGW | 1 cut(s) | 78 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 24, 25, 120, 440, 1001 |
| Bse118I | RCCGGY | 1 cut(s) | 161 |
| Bse1I | ACTGG | 6 cut(s) | 43, 125, 140, 187, 445, 667 |
| BseBI | CCWGG | 2 cut(s) | 530, 554 |
| BseDI | CCNNGG | 2 cut(s) | 253, 606 |
| BseGI | GGATG | 2 cut(s) | 661, 921 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 24, 25, 120, 440, 1001 |
| BseNI | ACTGG | 6 cut(s) | 43, 125, 140, 187, 445, 667 |
| BseSI | GKGCMC | 1 cut(s) | 1008 |
| BseXI | GCAGC | 2 cut(s) | 303, 614 |
| BseYI | CCCAGC | 1 cut(s) | 186 |
| BsgI | GTGCAG | 1 cut(s) | 249 |
| Bsh1236I | CGCG | 3 cut(s) | 328, 330, 990 |
| BshFI | GGCC | 7 cut(s) | 5, 145, 165, 356, 437, 518, 1006 |
| BsiHKAI | GWGCWC | 2 cut(s) | 336, 885 |
| BsiSI | CCGG | 4 cut(s) | 79, 162, 434, 454 |
| BslFI | GGGAC | 1 cut(s) | 47 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 24, 25, 120, 440, 1001 |
| BsmAI | GTCTC | 2 cut(s) | 715, 940 |
| BsmFI | GGGAC | 1 cut(s) | 47 |
| BsnI | GGCC | 7 cut(s) | 5, 145, 165, 356, 437, 518, 1006 |
| Bso31I | GGTCTC | 1 cut(s) | 715 |
| Bsp120I | GGGCCC | 1 cut(s) | 1004 |
| Bsp1286I | GDGCHC | 4 cut(s) | 115, 336, 885, 1008 |
| Bsp1407I | TGTACA | 1 cut(s) | 246 |
| Bsp143I | GATC | 2 cut(s) | 87, 532 |
| BspACI | CCGC | 3 cut(s) | 230, 326, 372 |
| BspANI | GGCC | 7 cut(s) | 5, 145, 165, 356, 437, 518, 1006 |
| BspFNI | CGCG | 3 cut(s) | 328, 330, 990 |
| BspHI | TCATGA | 3 cut(s) | 754, 877, 894 |
| BspLI | GGNNCC | 5 cut(s) | 89, 112, 534, 1006, 1007 |
| BspOI | GCTAGC | 1 cut(s) | 242 |
| BspPI | GGATC | 4 cut(s) | 82, 95, 527, 540 |
| BspTNI | GGTCTC | 1 cut(s) | 715 |
| BsrFI | RCCGGY | 1 cut(s) | 161 |
| BsrGI | TGTACA | 1 cut(s) | 246 |
| BsrI | ACTGG | 6 cut(s) | 43, 125, 140, 187, 445, 667 |
| BssAI | RCCGGY | 1 cut(s) | 161 |
| BssECI | CCNNGG | 2 cut(s) | 253, 606 |
| BssMI | GATC | 2 cut(s) | 87, 532 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 2 cut(s) | 530, 554 |
| Bst4CI | ACNGT | 1 cut(s) | 568 |
| BstAUI | TGTACA | 1 cut(s) | 246 |
| BstBAI | YACGTR | 1 cut(s) | 385 |
| BstC8I | GCNNGC | 8 cut(s) | 240, 321, 332, 336, 358, 392, 396, 576 |
| BstDEI | CTNAG | 2 cut(s) | 831, 996 |
| BstEII | GGTNACC | 2 cut(s) | 257, 466 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 999 |
| BstF5I | GGATG | 2 cut(s) | 661, 921 |
| BstFNI | CGCG | 3 cut(s) | 328, 330, 990 |
| BstHHI | GCGC | 2 cut(s) | 330, 992 |
| BstKTI | GATC | 2 cut(s) | 90, 535 |
| BstMAI | GTCTC | 2 cut(s) | 715, 940 |
| BstMBI | GATC | 2 cut(s) | 87, 532 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 192, 325, 340, 590, 599, 611, 620 |
| BstNI | CCWGG | 2 cut(s) | 530, 554 |
| BstPI | GGTNACC | 2 cut(s) | 257, 466 |
| BstSCI | CCNGG | 2 cut(s) | 528, 552 |
| BstSLI | GKGCMC | 1 cut(s) | 1008 |
| BstUI | CGCG | 3 cut(s) | 328, 330, 990 |
| BstV1I | GCAGC | 2 cut(s) | 303, 614 |
| BstV2I | GAAGAC | 1 cut(s) | 696 |
| BstX2I | RGATCY | 2 cut(s) | 87, 532 |
| BstYI | RGATCY | 2 cut(s) | 87, 532 |
| BsuRI | GGCC | 7 cut(s) | 5, 145, 165, 356, 437, 518, 1006 |
| BtsCI | GGATG | 2 cut(s) | 661, 921 |
| BtsIMutI | CAGTG | 4 cut(s) | 50, 133, 228, 438 |
| Cac8I | GCNNGC | 8 cut(s) | 240, 321, 332, 336, 358, 392, 396, 576 |
| CciI | TCATGA | 3 cut(s) | 754, 877, 894 |
| CfoI | GCGC | 2 cut(s) | 330, 992 |
| Cfr10I | RCCGGY | 1 cut(s) | 161 |
| Cfr13I | GGNCC | 2 cut(s) | 1004, 1005 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 7 cut(s) | 24, 107, 748, 755, 878, 895, 914 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 831, 996 |
| DpnI | GATC | 2 cut(s) | 89, 534 |
| DpnII | GATC | 2 cut(s) | 87, 532 |
| DriI | GACNNNNNGTC | 1 cut(s) | 416 |
| EaeI | YGGCCR | 3 cut(s) | 3, 163, 435 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 416 |
| Ecl136II | GAGCTC | 1 cut(s) | 883 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 3 cut(s) | 115, 885, 1008 |
| Eco31I | GGTCTC | 1 cut(s) | 715 |
| Eco53kI | GAGCTC | 1 cut(s) | 883 |
| Eco57I | CTGAAG | 1 cut(s) | 186 |
| Eco91I | GGTNACC | 2 cut(s) | 257, 466 |
| EcoICRI | GAGCTC | 1 cut(s) | 883 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 999 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1004, 1005 |
| EcoO65I | GGTNACC | 2 cut(s) | 257, 466 |
| EcoRII | CCWGG | 2 cut(s) | 528, 552 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| EcoT22I | ATGCAT | 1 cut(s) | 776 |
| EcoT38I | GRGCYC | 3 cut(s) | 115, 885, 1008 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| FaeI | CATG | 7 cut(s) | 27, 110, 751, 758, 881, 898, 917 |
| FaqI | GGGAC | 1 cut(s) | 47 |
| FatI | CATG | 7 cut(s) | 23, 106, 747, 754, 877, 894, 913 |
| FauI | CCCGC | 1 cut(s) | 333 |
| FauNDI | CATATG | 1 cut(s) | 651 |
| FblI | GTMKAC | 1 cut(s) | 420 |
| Fnu4HI | GCNGC | 2 cut(s) | 317, 603 |
| FokI | GGATG | 2 cut(s) | 668, 908 |
| FriOI | GRGCYC | 3 cut(s) | 115, 885, 1008 |
| Fsp4HI | GCNGC | 2 cut(s) | 317, 603 |
| FspBI | CTAG | 4 cut(s) | 239, 549, 761, 971 |
| GlaI | GCGC | 2 cut(s) | 329, 991 |
| GluI | GCNGC | 2 cut(s) | 317, 603 |
| GsaI | CCCAGC | 1 cut(s) | 190 |
| GsuI | CTGGAG | 2 cut(s) | 462, 650 |
| HaeIII | GGCC | 7 cut(s) | 5, 145, 165, 356, 437, 518, 1006 |
| HapII | CCGG | 4 cut(s) | 79, 162, 434, 454 |
| HhaI | GCGC | 2 cut(s) | 330, 992 |
| Hin1II | CATG | 7 cut(s) | 27, 110, 751, 758, 881, 898, 917 |
| Hin6I | GCGC | 2 cut(s) | 328, 990 |
| HinP1I | GCGC | 2 cut(s) | 328, 990 |
| HincII | GTYRAC | 1 cut(s) | 421 |
| HindII | GTYRAC | 1 cut(s) | 421 |
| HindIII | AAGCTT | 1 cut(s) | 582 |
| HinfI | GANTC | 7 cut(s) | 525, 538, 643, 743, 793, 891, 974 |
| HpaII | CCGG | 4 cut(s) | 79, 162, 434, 454 |
| HphI | GGTGA | 3 cut(s) | 269, 420, 478 |
| Hpy166II | GTNNAC | 1 cut(s) | 421 |
| Hpy188I | TCNGA | 4 cut(s) | 87, 205, 537, 681 |
| Hpy188III | TCNNGA | 7 cut(s) | 64, 542, 755, 878, 895, 945, 971 |
| Hpy8I | GTNNAC | 1 cut(s) | 421 |
| HpyAV | CCTTC | 3 cut(s) | 311, 693, 814 |
| HpyCH4III | ACNGT | 1 cut(s) | 568 |
| HpyCH4IV | ACGT | 2 cut(s) | 384, 735 |
| HpyCH4V | TGCA | 4 cut(s) | 266, 390, 774, 857 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 192, 325, 340, 590, 599, 611, 620 |
| HpyF3I | CTNAG | 2 cut(s) | 831, 996 |
| HpySE526I | ACGT | 2 cut(s) | 384, 735 |
| Hsp92II | CATG | 7 cut(s) | 27, 110, 751, 758, 881, 898, 917 |
| HspAI | GCGC | 2 cut(s) | 328, 990 |
| Kzo9I | GATC | 2 cut(s) | 87, 532 |
| LmnI | GCTCC | 3 cut(s) | 20, 110, 669 |
| Lsp1109I | GCAGC | 2 cut(s) | 303, 614 |
| LweI | GCATC | 2 cut(s) | 517, 761 |
| MaeI | CTAG | 4 cut(s) | 239, 549, 761, 971 |
| MaeII | ACGT | 2 cut(s) | 384, 735 |
| MaeIII | GTNAC | 5 cut(s) | 257, 466, 740, 826, 850 |
| MalI | GATC | 2 cut(s) | 89, 534 |
| MboI | GATC | 2 cut(s) | 87, 532 |
| MboII | GAAGA | 4 cut(s) | 442, 698, 701, 943 |
| MflI | RGATCY | 2 cut(s) | 87, 532 |
| MhlI | GDGCHC | 4 cut(s) | 115, 336, 885, 1008 |
| MluCI | AATT | 2 cut(s) | 940, 979 |
| MlyI | GAGTC | 5 cut(s) | 637, 737, 787, 900, 983 |
| Mph1103I | ATGCAT | 1 cut(s) | 776 |
| MslI | CAYNNNNRTG | 3 cut(s) | 367, 654, 926 |
| MspI | CCGG | 4 cut(s) | 79, 162, 434, 454 |
| MspR9I | CCNGG | 2 cut(s) | 530, 554 |
| MvaI | CCWGG | 2 cut(s) | 530, 554 |
| MvnI | CGCG | 3 cut(s) | 328, 330, 990 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 192, 325, 340, 590, 599, 611, 620 |
| NdeI | CATATG | 1 cut(s) | 651 |
| NdeII | GATC | 2 cut(s) | 87, 532 |
| NheI | GCTAGC | 1 cut(s) | 238 |
| NlaIII | CATG | 7 cut(s) | 27, 110, 751, 758, 881, 898, 917 |
| NlaIV | GGNNCC | 5 cut(s) | 89, 112, 534, 1006, 1007 |
| NmuCI | GTSAC | 3 cut(s) | 257, 466, 740 |
| NsiI | ATGCAT | 1 cut(s) | 776 |
| PagI | TCATGA | 3 cut(s) | 754, 877, 894 |
| PfeI | GAWTC | 2 cut(s) | 525, 538 |
| PfoI | TCCNGGA | 1 cut(s) | 528 |
| PkrI | GCNGC | 2 cut(s) | 318, 604 |
| PleI | GAGTC | 5 cut(s) | 637, 737, 787, 899, 982 |
| PpsI | GAGTC | 5 cut(s) | 637, 737, 787, 899, 982 |
| Ppu21I | YACGTR | 1 cut(s) | 385 |
| Psp124BI | GAGCTC | 1 cut(s) | 885 |
| Psp6I | CCWGG | 2 cut(s) | 528, 552 |
| PspEI | GGTNACC | 2 cut(s) | 257, 466 |
| PspFI | CCCAGC | 1 cut(s) | 186 |
| PspGI | CCWGG | 2 cut(s) | 528, 552 |
| PspN4I | GGNNCC | 5 cut(s) | 89, 112, 534, 1006, 1007 |
| PspOMI | GGGCCC | 1 cut(s) | 1004 |
| PspPI | GGNCC | 2 cut(s) | 1004, 1005 |
| PsuI | RGATCY | 2 cut(s) | 87, 532 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 367, 654, 926 |
| SacI | GAGCTC | 1 cut(s) | 885 |
| SalI | GTCGAC | 1 cut(s) | 419 |
| SatI | GCNGC | 2 cut(s) | 317, 603 |
| Sau3AI | GATC | 2 cut(s) | 87, 532 |
| Sau96I | GGNCC | 2 cut(s) | 1004, 1005 |
| SchI | GAGTC | 5 cut(s) | 637, 737, 787, 900, 983 |
| ScrFI | CCNGG | 2 cut(s) | 530, 554 |
| SduI | GDGCHC | 4 cut(s) | 115, 336, 885, 1008 |
| SfaNI | GCATC | 2 cut(s) | 517, 761 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 367, 654, 926 |
| SmlI | CTYRAG | 3 cut(s) | 512, 542, 579 |
| SmoI | CTYRAG | 3 cut(s) | 512, 542, 579 |
| Sse9I | AATT | 2 cut(s) | 940, 979 |
| SsiI | CCGC | 3 cut(s) | 230, 326, 372 |
| SspMI | CTAG | 4 cut(s) | 239, 549, 761, 971 |
| SstI | GAGCTC | 1 cut(s) | 885 |
| StyD4I | CCNGG | 2 cut(s) | 528, 552 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 1 cut(s) | 568 |
| TaiI | ACGT | 2 cut(s) | 387, 738 |
| TaqI | TCGA | 5 cut(s) | 304, 420, 481, 504, 944 |
| TasI | AATT | 2 cut(s) | 940, 979 |
| TatI | WGTACW | 1 cut(s) | 246 |
| TfiI | GAWTC | 2 cut(s) | 525, 538 |
| TscAI | CASTG | 4 cut(s) | 50, 140, 228, 445 |
| TseFI | GTSAC | 3 cut(s) | 257, 466, 740 |
| TseI | GCWGC | 2 cut(s) | 316, 602 |
| Tsp45I | GTSAC | 3 cut(s) | 257, 466, 740 |
| TspDTI | ATGAA | 6 cut(s) | 83, 95, 699, 743, 866, 911 |
| TspGWI | ACGGA | 1 cut(s) | 728 |
| TspRI | CASTG | 4 cut(s) | 50, 140, 228, 445 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 999 |
| XbaI | TCTAGA | 1 cut(s) | 970 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 526 |
| XmiI | GTMKAC | 1 cut(s) | 420 |
| XspI | CTAG | 4 cut(s) | 239, 549, 761, 971 |
| Zsp2I | ATGCAT | 1 cut(s) | 776 |