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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 295 |
| AclWI | GGATC | 1 cut(s) | 169 |
| AcsI | RAATTY | 1 cut(s) | 362 |
| AfaI | GTAC | 1 cut(s) | 182 |
| AgsI | TTSAA | 2 cut(s) | 53, 310 |
| AjnI | CCWGG | 1 cut(s) | 63 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 222, 254 |
| AluBI | AGCT | 3 cut(s) | 95, 496, 506 |
| AluI | AGCT | 3 cut(s) | 95, 496, 506 |
| Alw21I | GWGCWC | 1 cut(s) | 498 |
| Alw26I | GTCTC | 1 cut(s) | 226 |
| AlwI | GGATC | 1 cut(s) | 169 |
| ApeKI | GCWGC | 1 cut(s) | 113 |
| ApoI | RAATTY | 1 cut(s) | 362 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 339 |
| AsuHPI | GGTGA | 1 cut(s) | 145 |
| BanII | GRGCYC | 1 cut(s) | 498 |
| BbsI | GAAGAC | 2 cut(s) | 207, 410 |
| Bbv12I | GWGCWC | 1 cut(s) | 498 |
| BbvI | GCAGC | 1 cut(s) | 125 |
| BccI | CCATC | 2 cut(s) | 276, 430 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 449, 483 |
| BciT130I | CCWGG | 1 cut(s) | 65 |
| BcoDI | GTCTC | 1 cut(s) | 226 |
| BfaI | CTAG | 2 cut(s) | 272, 471 |
| BfmI | CTRYAG | 1 cut(s) | 367 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 122 |
| BisI | GCNGC | 1 cut(s) | 114 |
| BlsI | GCNGC | 1 cut(s) | 115 |
| Bme1390I | CCNGG | 1 cut(s) | 65 |
| BmrFI | CCNGG | 1 cut(s) | 65 |
| BpiI | GAAGAC | 2 cut(s) | 207, 410 |
| BpuEI | CTTGAG | 1 cut(s) | 75 |
| Bsa29I | ATCGAT | 1 cut(s) | 459 |
| BsaI | GGTCTC | 1 cut(s) | 226 |
| Bse1I | ACTGG | 1 cut(s) | 178 |
| BseBI | CCWGG | 1 cut(s) | 65 |
| BseCI | ATCGAT | 1 cut(s) | 459 |
| BseGI | GGATG | 4 cut(s) | 73, 144, 172, 534 |
| BseNI | ACTGG | 1 cut(s) | 178 |
| BseXI | GCAGC | 1 cut(s) | 125 |
| BshVI | ATCGAT | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 1 cut(s) | 498 |
| BsmAI | GTCTC | 1 cut(s) | 226 |
| Bso31I | GGTCTC | 1 cut(s) | 226 |
| Bsp1286I | GDGCHC | 1 cut(s) | 498 |
| Bsp143I | GATC | 2 cut(s) | 174, 378 |
| BspACI | CCGC | 1 cut(s) | 295 |
| BspDI | ATCGAT | 1 cut(s) | 459 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspPI | GGATC | 1 cut(s) | 169 |
| BspTNI | GGTCTC | 1 cut(s) | 226 |
| BsrI | ACTGG | 1 cut(s) | 178 |
| BssMI | GATC | 2 cut(s) | 174, 378 |
| Bst2UI | CCWGG | 1 cut(s) | 65 |
| Bst6I | CTCTTC | 1 cut(s) | 162 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 2 cut(s) | 118, 444 |
| BstF5I | GGATG | 4 cut(s) | 73, 144, 172, 534 |
| BstKTI | GATC | 2 cut(s) | 177, 381 |
| BstMAI | GTCTC | 1 cut(s) | 226 |
| BstMBI | GATC | 2 cut(s) | 174, 378 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 101, 110, 122 |
| BstNI | CCWGG | 1 cut(s) | 65 |
| BstNSI | RCATGY | 1 cut(s) | 89 |
| BstSCI | CCNGG | 1 cut(s) | 63 |
| BstSFI | CTRYAG | 1 cut(s) | 367 |
| BstV1I | GCAGC | 1 cut(s) | 125 |
| BstV2I | GAAGAC | 2 cut(s) | 207, 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 459 |
| BsuTUI | ATCGAT | 1 cut(s) | 459 |
| BtgZI | GCGATG | 1 cut(s) | 404 |
| BtsCI | GGATG | 4 cut(s) | 73, 144, 172, 534 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CciI | TCATGA | 1 cut(s) | 490 |
| ClaI | ATCGAT | 1 cut(s) | 459 |
| Csp6I | GTAC | 1 cut(s) | 181 |
| CviAII | CATG | 2 cut(s) | 86, 491 |
| CviJI | RGCY | 8 cut(s) | 48, 63, 95, 116, 214, 291, 496, 506 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 63, 95, 116, 214, 291, 496, 506 |
| CviQI | GTAC | 1 cut(s) | 181 |
| DdeI | CTNAG | 2 cut(s) | 118, 444 |
| DpnI | GATC | 2 cut(s) | 176, 380 |
| DpnII | GATC | 2 cut(s) | 174, 378 |
| Eam1104I | CTCTTC | 1 cut(s) | 162 |
| EarI | CTCTTC | 1 cut(s) | 162 |
| Ecl136II | GAGCTC | 1 cut(s) | 496 |
| Eco24I | GRGCYC | 1 cut(s) | 498 |
| Eco31I | GGTCTC | 1 cut(s) | 226 |
| Eco53kI | GAGCTC | 1 cut(s) | 496 |
| EcoICRI | GAGCTC | 1 cut(s) | 496 |
| EcoRI | GAATTC | 1 cut(s) | 362 |
| EcoRII | CCWGG | 1 cut(s) | 63 |
| EcoT38I | GRGCYC | 1 cut(s) | 498 |
| FaeI | CATG | 2 cut(s) | 89, 494 |
| FaiI | YATR | 9 cut(s) | 87, 162, 164, 191, 288, 492, 509, 528, 552 |
| FatI | CATG | 2 cut(s) | 85, 490 |
| FauNDI | CATATG | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 1 cut(s) | 114 |
| FokI | GGATG | 4 cut(s) | 80, 131, 179, 521 |
| FriOI | GRGCYC | 1 cut(s) | 498 |
| Fsp4HI | GCNGC | 1 cut(s) | 114 |
| FspBI | CTAG | 2 cut(s) | 272, 471 |
| GluI | GCNGC | 1 cut(s) | 114 |
| Hin1II | CATG | 2 cut(s) | 89, 494 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 6 cut(s) | 154, 170, 254, 406, 456, 477 |
| HphI | GGTGA | 1 cut(s) | 145 |
| Hpy188I | TCNGA | 1 cut(s) | 334 |
| Hpy188III | TCNNGA | 2 cut(s) | 320, 491 |
| HpyAV | CCTTC | 1 cut(s) | 204 |
| HpyCH4IV | ACGT | 1 cut(s) | 246 |
| HpyCH4V | TGCA | 1 cut(s) | 431 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 101, 110, 122 |
| HpyF3I | CTNAG | 2 cut(s) | 118, 444 |
| HpySE526I | ACGT | 1 cut(s) | 246 |
| Hsp92II | CATG | 2 cut(s) | 89, 494 |
| Kzo9I | GATC | 2 cut(s) | 174, 378 |
| LmnI | GCTCC | 2 cut(s) | 34, 503 |
| LpnPI | CCDG | 6 cut(s) | 23, 50, 77, 191, 220, 272 |
| Lsp1109I | GCAGC | 1 cut(s) | 125 |
| MaeI | CTAG | 2 cut(s) | 272, 471 |
| MaeII | ACGT | 1 cut(s) | 246 |
| MaeIII | GTNAC | 3 cut(s) | 5, 251, 463 |
| MalI | GATC | 2 cut(s) | 176, 380 |
| MboI | GATC | 2 cut(s) | 174, 378 |
| MboII | GAAGA | 5 cut(s) | 149, 209, 212, 415, 556 |
| MhlI | GDGCHC | 1 cut(s) | 498 |
| MluCI | AATT | 3 cut(s) | 17, 362, 553 |
| MlyI | GAGTC | 3 cut(s) | 148, 248, 400 |
| MnlI | CCTC | 2 cut(s) | 115, 302 |
| MroXI | GAANNNNTTC | 1 cut(s) | 339 |
| MseI | TTAA | 3 cut(s) | 348, 356, 556 |
| MslI | CAYNNNNRTG | 3 cut(s) | 149, 165, 539 |
| MspR9I | CCNGG | 1 cut(s) | 65 |
| MvaI | CCWGG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 101, 110, 122 |
| NdeI | CATATG | 1 cut(s) | 162 |
| NdeII | GATC | 2 cut(s) | 174, 378 |
| NlaIII | CATG | 2 cut(s) | 89, 494 |
| NmuCI | GTSAC | 1 cut(s) | 251 |
| NspI | RCATGY | 1 cut(s) | 89 |
| PaeI | GCATGC | 1 cut(s) | 89 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PdmI | GAANNNNTTC | 1 cut(s) | 339 |
| PfeI | GAWTC | 3 cut(s) | 170, 456, 477 |
| PkrI | GCNGC | 1 cut(s) | 115 |
| PleI | GAGTC | 3 cut(s) | 148, 248, 400 |
| PpsI | GAGTC | 3 cut(s) | 148, 248, 400 |
| Psp124BI | GAGCTC | 1 cut(s) | 498 |
| Psp6I | CCWGG | 1 cut(s) | 63 |
| PspGI | CCWGG | 1 cut(s) | 63 |
| RsaI | GTAC | 1 cut(s) | 182 |
| RsaNI | GTAC | 1 cut(s) | 181 |
| RseI | CAYNNNNRTG | 3 cut(s) | 149, 165, 539 |
| SacI | GAGCTC | 1 cut(s) | 498 |
| SaqAI | TTAA | 3 cut(s) | 348, 356, 556 |
| SatI | GCNGC | 1 cut(s) | 114 |
| Sau3AI | GATC | 2 cut(s) | 174, 378 |
| SchI | GAGTC | 3 cut(s) | 148, 248, 400 |
| ScrFI | CCNGG | 1 cut(s) | 65 |
| SduI | GDGCHC | 1 cut(s) | 498 |
| SetI | ASST | 8 cut(s) | 12, 97, 135, 249, 273, 488, 498, 508 |
| SfcI | CTRYAG | 1 cut(s) | 367 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 149, 165, 539 |
| SmlI | CTYRAG | 1 cut(s) | 90 |
| SmoI | CTYRAG | 1 cut(s) | 90 |
| SphI | GCATGC | 1 cut(s) | 89 |
| Sse9I | AATT | 3 cut(s) | 17, 362, 553 |
| SsiI | CCGC | 1 cut(s) | 295 |
| SspI | AATATT | 1 cut(s) | 56 |
| SspMI | CTAG | 2 cut(s) | 272, 471 |
| SstI | GAGCTC | 1 cut(s) | 498 |
| StyD4I | CCNGG | 1 cut(s) | 63 |
| TaiI | ACGT | 1 cut(s) | 249 |
| TaqI | TCGA | 4 cut(s) | 173, 228, 454, 459 |
| TasI | AATT | 3 cut(s) | 17, 362, 553 |
| TatI | WGTACW | 1 cut(s) | 180 |
| TfiI | GAWTC | 3 cut(s) | 170, 456, 477 |
| Tru1I | TTAA | 3 cut(s) | 348, 356, 556 |
| Tru9I | TTAA | 3 cut(s) | 348, 356, 556 |
| TseFI | GTSAC | 1 cut(s) | 251 |
| TseI | GCWGC | 1 cut(s) | 113 |
| Tsp45I | GTSAC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 5 cut(s) | 149, 206, 210, 479, 524 |
| TspGWI | ACGGA | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 362 |
| XceI | RCATGY | 1 cut(s) | 89 |
| XmnI | GAANNNNTTC | 1 cut(s) | 339 |
| XspI | CTAG | 2 cut(s) | 272, 471 |