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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 390, 435 |
| Acc36I | ACCTGC | 1 cut(s) | 138 |
| AccB1I | GGYRCC | 1 cut(s) | 640 |
| AciI | CCGC | 2 cut(s) | 510, 664 |
| AclWI | GGATC | 1 cut(s) | 323 |
| AcuI | CTGAAG | 1 cut(s) | 318 |
| AcvI | CACGTG | 2 cut(s) | 553, 581 |
| AdeI | CACNNNGTG | 1 cut(s) | 556 |
| AfaI | GTAC | 2 cut(s) | 295, 467 |
| AfeI | AGCGCT | 2 cut(s) | 63, 74 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 198, 449, 450, 475, 519, 538, 582, 654 |
| AflIII | ACRYGT | 2 cut(s) | 550, 578 |
| AgsI | TTSAA | 5 cut(s) | 112, 119, 148, 396, 407 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 215 |
| AjnI | CCWGG | 2 cut(s) | 518, 565 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 7 cut(s) | 52, 158, 176, 232, 334, 356, 463 |
| AluI | AGCT | 7 cut(s) | 52, 158, 176, 232, 334, 356, 463 |
| Alw21I | GWGCWC | 1 cut(s) | 675 |
| Alw44I | GTGCAC | 1 cut(s) | 671 |
| AlwI | GGATC | 1 cut(s) | 323 |
| Aor51HI | AGCGCT | 2 cut(s) | 63, 74 |
| AoxI | GGCC | 2 cut(s) | 398, 498 |
| ApaI | GGGCCC | 1 cut(s) | 502 |
| ApaLI | GTGCAC | 1 cut(s) | 671 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspA2I | CCTAGG | 1 cut(s) | 652 |
| AspLEI | GCGC | 4 cut(s) | 64, 75, 135, 456 |
| AspS9I | GGNCC | 3 cut(s) | 399, 498, 499 |
| AvrII | CCTAGG | 1 cut(s) | 652 |
| BaeGI | GKGCMC | 2 cut(s) | 502, 675 |
| BanI | GGYRCC | 1 cut(s) | 640 |
| BanII | GRGCYC | 1 cut(s) | 502 |
| BauI | CACGAG | 2 cut(s) | 319, 377 |
| BbrPI | CACGTG | 2 cut(s) | 553, 581 |
| Bbv12I | GWGCWC | 1 cut(s) | 675 |
| BccI | CCATC | 1 cut(s) | 306 |
| BciT130I | CCWGG | 2 cut(s) | 520, 567 |
| BciVI | GTATCC | 2 cut(s) | 540, 611 |
| BfaI | CTAG | 2 cut(s) | 65, 653 |
| BfmI | CTRYAG | 2 cut(s) | 153, 351 |
| BfoI | RGCGCY | 2 cut(s) | 65, 76 |
| BfuAI | ACCTGC | 1 cut(s) | 138 |
| BfuI | GTATCC | 2 cut(s) | 540, 611 |
| BlnI | CCTAGG | 1 cut(s) | 652 |
| Bme1390I | CCNGG | 2 cut(s) | 520, 567 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 3 cut(s) | 399, 498, 499 |
| BmiI | GGNNCC | 2 cut(s) | 500, 642 |
| BmrFI | CCNGG | 2 cut(s) | 520, 567 |
| BmsI | GCATC | 1 cut(s) | 31 |
| BsaAI | YACGTR | 2 cut(s) | 553, 581 |
| BsaJI | CCNNGG | 1 cut(s) | 652 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 14, 44, 577, 607, 633, 663 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 198, 449, 450, 475, 519, 538, 582, 654 |
| Bse3DI | GCAATG | 1 cut(s) | 88 |
| BseBI | CCWGG | 2 cut(s) | 520, 567 |
| BseDI | CCNNGG | 1 cut(s) | 652 |
| BseGI | GGATG | 2 cut(s) | 46, 317 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 198, 449, 450, 475, 519, 538, 582, 654 |
| BseMI | GCAATG | 1 cut(s) | 88 |
| BseMII | CTCAG | 2 cut(s) | 28, 348 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseSI | GKGCMC | 2 cut(s) | 502, 675 |
| BshFI | GGCC | 2 cut(s) | 400, 500 |
| BshNI | GGYRCC | 1 cut(s) | 640 |
| BsiHKAI | GWGCWC | 1 cut(s) | 675 |
| BslFI | GGGAC | 1 cut(s) | 503 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 198, 449, 450, 475, 519, 538, 582, 654 |
| BsmFI | GGGAC | 1 cut(s) | 503 |
| BsnI | GGCC | 2 cut(s) | 400, 500 |
| Bsp120I | GGGCCC | 1 cut(s) | 498 |
| Bsp1286I | GDGCHC | 2 cut(s) | 502, 675 |
| Bsp143I | GATC | 2 cut(s) | 33, 315 |
| BspACI | CCGC | 2 cut(s) | 510, 664 |
| BspANI | GGCC | 2 cut(s) | 400, 500 |
| BspCNI | CTCAG | 2 cut(s) | 27, 349 |
| BspHI | TCATGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 2 cut(s) | 500, 642 |
| BspMI | ACCTGC | 1 cut(s) | 138 |
| BspPI | GGATC | 1 cut(s) | 323 |
| BspQI | GCTCTTC | 2 cut(s) | 63, 183 |
| BspT107I | GGYRCC | 1 cut(s) | 640 |
| BsrDI | GCAATG | 1 cut(s) | 88 |
| BssECI | CCNNGG | 1 cut(s) | 652 |
| BssMI | GATC | 2 cut(s) | 33, 315 |
| BssSI | CACGAG | 2 cut(s) | 319, 377 |
| BssT1I | CCWWGG | 1 cut(s) | 652 |
| Bst2BI | CACGAG | 2 cut(s) | 319, 377 |
| Bst2UI | CCWGG | 2 cut(s) | 520, 567 |
| Bst4CI | ACNGT | 2 cut(s) | 189, 293 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 183 |
| BstBAI | YACGTR | 2 cut(s) | 553, 581 |
| BstC8I | GCNNGC | 1 cut(s) | 664 |
| BstDEI | CTNAG | 4 cut(s) | 14, 357, 411, 470 |
| BstF5I | GGATG | 2 cut(s) | 46, 317 |
| BstH2I | RGCGCY | 2 cut(s) | 65, 76 |
| BstHHI | GCGC | 4 cut(s) | 64, 75, 135, 456 |
| BstKTI | GATC | 2 cut(s) | 36, 318 |
| BstMBI | GATC | 2 cut(s) | 33, 315 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 70, 460 |
| BstNI | CCWGG | 2 cut(s) | 520, 567 |
| BstSCI | CCNGG | 2 cut(s) | 518, 565 |
| BstSFI | CTRYAG | 2 cut(s) | 153, 351 |
| BstSLI | GKGCMC | 2 cut(s) | 502, 675 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 616 |
| BsuI | GTATCC | 2 cut(s) | 540, 611 |
| BsuRI | GGCC | 2 cut(s) | 400, 500 |
| BtsCI | GGATG | 2 cut(s) | 46, 317 |
| BveI | ACCTGC | 1 cut(s) | 138 |
| Cac8I | GCNNGC | 1 cut(s) | 664 |
| CciI | TCATGA | 1 cut(s) | 421 |
| CfoI | GCGC | 4 cut(s) | 64, 75, 135, 456 |
| Cfr13I | GGNCC | 3 cut(s) | 399, 498, 499 |
| Csp6I | GTAC | 2 cut(s) | 294, 466 |
| CviAII | CATG | 4 cut(s) | 193, 365, 422, 484 |
| CviQI | GTAC | 2 cut(s) | 294, 466 |
| DdeI | CTNAG | 4 cut(s) | 14, 357, 411, 470 |
| DpnI | GATC | 2 cut(s) | 35, 317 |
| DpnII | GATC | 2 cut(s) | 33, 315 |
| DraIII | CACNNNGTG | 1 cut(s) | 556 |
| DriI | GACNNNNNGTC | 1 cut(s) | 215 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 183 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 215 |
| EarI | CTCTTC | 2 cut(s) | 63, 183 |
| Eco130I | CCWWGG | 1 cut(s) | 652 |
| Eco24I | GRGCYC | 1 cut(s) | 502 |
| Eco47III | AGCGCT | 2 cut(s) | 63, 74 |
| Eco57I | CTGAAG | 1 cut(s) | 318 |
| Eco72I | CACGTG | 2 cut(s) | 553, 581 |
| EcoRII | CCWGG | 2 cut(s) | 518, 565 |
| EcoT14I | CCWWGG | 1 cut(s) | 652 |
| EcoT38I | GRGCYC | 1 cut(s) | 502 |
| ErhI | CCWWGG | 1 cut(s) | 652 |
| FaeI | CATG | 4 cut(s) | 196, 368, 425, 487 |
| FaqI | GGGAC | 1 cut(s) | 503 |
| FatI | CATG | 4 cut(s) | 192, 364, 421, 483 |
| FauI | CCCGC | 1 cut(s) | 671 |
| FokI | GGATG | 2 cut(s) | 53, 324 |
| FriOI | GRGCYC | 1 cut(s) | 502 |
| FspBI | CTAG | 2 cut(s) | 65, 653 |
| GlaI | GCGC | 4 cut(s) | 63, 74, 134, 455 |
| HaeII | RGCGCY | 2 cut(s) | 65, 76 |
| HaeIII | GGCC | 2 cut(s) | 400, 500 |
| HhaI | GCGC | 4 cut(s) | 64, 75, 135, 456 |
| Hin1II | CATG | 4 cut(s) | 196, 368, 425, 487 |
| Hin6I | GCGC | 4 cut(s) | 62, 73, 133, 454 |
| HinP1I | GCGC | 4 cut(s) | 62, 73, 133, 454 |
| HinfI | GANTC | 1 cut(s) | 92 |
| Hpy166II | GTNNAC | 1 cut(s) | 673 |
| Hpy188I | TCNGA | 2 cut(s) | 17, 172 |
| Hpy188III | TCNNGA | 3 cut(s) | 319, 379, 422 |
| Hpy8I | GTNNAC | 1 cut(s) | 673 |
| HpyAV | CCTTC | 3 cut(s) | 106, 265, 517 |
| HpyCH4III | ACNGT | 2 cut(s) | 189, 293 |
| HpyCH4IV | ACGT | 4 cut(s) | 492, 552, 580, 669 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 440, 673 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 70, 460 |
| HpyF3I | CTNAG | 4 cut(s) | 14, 357, 411, 470 |
| HpySE526I | ACGT | 4 cut(s) | 492, 552, 580, 669 |
| Hsp92II | CATG | 4 cut(s) | 196, 368, 425, 487 |
| HspAI | GCGC | 4 cut(s) | 62, 73, 133, 454 |
| Kzo9I | GATC | 2 cut(s) | 33, 315 |
| LguI | GCTCTTC | 2 cut(s) | 63, 183 |
| LpnPI | CCDG | 9 cut(s) | 117, 143, 228, 294, 505, 532, 552, 579, 618 |
| LweI | GCATC | 1 cut(s) | 31 |
| MaeI | CTAG | 2 cut(s) | 65, 653 |
| MaeII | ACGT | 4 cut(s) | 492, 552, 580, 669 |
| MaeIII | GTNAC | 1 cut(s) | 217 |
| MalI | GATC | 2 cut(s) | 35, 317 |
| MboI | GATC | 2 cut(s) | 33, 315 |
| MboII | GAAGA | 2 cut(s) | 80, 170 |
| MhlI | GDGCHC | 2 cut(s) | 502, 675 |
| MluCI | AATT | 6 cut(s) | 166, 234, 385, 391, 430, 679 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MseI | TTAA | 1 cut(s) | 682 |
| MslI | CAYNNNNRTG | 2 cut(s) | 377, 614 |
| MspR9I | CCNGG | 2 cut(s) | 520, 567 |
| MvaI | CCWGG | 2 cut(s) | 520, 567 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 70, 460 |
| NdeII | GATC | 2 cut(s) | 33, 315 |
| NlaIII | CATG | 4 cut(s) | 196, 368, 425, 487 |
| NlaIV | GGNNCC | 2 cut(s) | 500, 642 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| PagI | TCATGA | 1 cut(s) | 421 |
| PciSI | GCTCTTC | 2 cut(s) | 63, 183 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 666 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PmaCI | CACGTG | 2 cut(s) | 553, 581 |
| PmlI | CACGTG | 2 cut(s) | 553, 581 |
| Ppu21I | YACGTR | 2 cut(s) | 553, 581 |
| PsiI | TTATAA | 2 cut(s) | 390, 435 |
| Psp6I | CCWGG | 2 cut(s) | 518, 565 |
| PspCI | CACGTG | 2 cut(s) | 553, 581 |
| PspGI | CCWGG | 2 cut(s) | 518, 565 |
| PspN4I | GGNNCC | 2 cut(s) | 500, 642 |
| PspOMI | GGGCCC | 1 cut(s) | 498 |
| PspPI | GGNCC | 3 cut(s) | 399, 498, 499 |
| RsaI | GTAC | 2 cut(s) | 295, 467 |
| RsaNI | GTAC | 2 cut(s) | 294, 466 |
| RseI | CAYNNNNRTG | 2 cut(s) | 377, 614 |
| SapI | GCTCTTC | 2 cut(s) | 63, 183 |
| SaqAI | TTAA | 1 cut(s) | 682 |
| Sau3AI | GATC | 2 cut(s) | 33, 315 |
| Sau96I | GGNCC | 3 cut(s) | 399, 498, 499 |
| ScrFI | CCNGG | 2 cut(s) | 520, 567 |
| SduI | GDGCHC | 2 cut(s) | 502, 675 |
| SfaNI | GCATC | 1 cut(s) | 31 |
| SfcI | CTRYAG | 2 cut(s) | 153, 351 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 377, 614 |
| Sse9I | AATT | 6 cut(s) | 166, 234, 385, 391, 430, 679 |
| SsiI | CCGC | 2 cut(s) | 510, 664 |
| SspMI | CTAG | 2 cut(s) | 65, 653 |
| StyD4I | CCNGG | 2 cut(s) | 518, 565 |
| StyI | CCWWGG | 1 cut(s) | 652 |
| TaaI | ACNGT | 2 cut(s) | 189, 293 |
| TaiI | ACGT | 4 cut(s) | 495, 555, 583, 672 |
| TaqI | TCGA | 1 cut(s) | 32 |
| TasI | AATT | 6 cut(s) | 166, 234, 385, 391, 430, 679 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 1 cut(s) | 682 |
| Tru9I | TTAA | 1 cut(s) | 682 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 2 cut(s) | 317, 410 |
| VneI | GTGCAC | 1 cut(s) | 671 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 540 |
| XmaJI | CCTAGG | 1 cut(s) | 652 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 2 cut(s) | 65, 653 |