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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 405, 479 |
| AccB1I | GGYRCC | 3 cut(s) | 405, 479, 563 |
| AccII | CGCG | 1 cut(s) | 390 |
| AciI | CCGC | 2 cut(s) | 82, 484 |
| AclWI | GGATC | 1 cut(s) | 342 |
| AcoI | YGGCCR | 1 cut(s) | 550 |
| AcsI | RAATTY | 1 cut(s) | 149 |
| AcyI | GRCGYC | 1 cut(s) | 564 |
| AfaI | GTAC | 2 cut(s) | 407, 481 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 401 |
| AgsI | TTSAA | 1 cut(s) | 97 |
| AluBI | AGCT | 2 cut(s) | 283, 293 |
| AluI | AGCT | 2 cut(s) | 283, 293 |
| Alw21I | GWGCWC | 1 cut(s) | 285 |
| Alw26I | GTCTC | 1 cut(s) | 13 |
| AlwI | GGATC | 1 cut(s) | 342 |
| AoxI | GGCC | 1 cut(s) | 550 |
| ApoI | RAATTY | 1 cut(s) | 149 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 126 |
| Asp718I | GGTACC | 2 cut(s) | 405, 479 |
| AspLEI | GCGC | 2 cut(s) | 566, 607 |
| AspS9I | GGNCC | 1 cut(s) | 452 |
| AvaII | GGWCC | 1 cut(s) | 452 |
| BalI | TGGCCA | 1 cut(s) | 552 |
| BanI | GGYRCC | 3 cut(s) | 405, 479, 563 |
| BanII | GRGCYC | 1 cut(s) | 285 |
| BbsI | GAAGAC | 1 cut(s) | 197 |
| Bbv12I | GWGCWC | 1 cut(s) | 285 |
| BccI | CCATC | 3 cut(s) | 63, 217, 591 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 236, 270 |
| BclI | TGATCA | 1 cut(s) | 661 |
| BcoDI | GTCTC | 1 cut(s) | 13 |
| BfaI | CTAG | 1 cut(s) | 59 |
| BfoI | RGCGCY | 2 cut(s) | 567, 608 |
| Bme18I | GGWCC | 1 cut(s) | 452 |
| BmgT120I | GGNCC | 1 cut(s) | 452 |
| BmiI | GGNNCC | 4 cut(s) | 407, 481, 506, 565 |
| BpiI | GAAGAC | 1 cut(s) | 197 |
| Bsa29I | ATCGAT | 1 cut(s) | 246 |
| BsaHI | GRCGYC | 1 cut(s) | 564 |
| BsaI | GGTCTC | 1 cut(s) | 13 |
| BsaJI | CCNNGG | 1 cut(s) | 351 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 401 |
| Bse1I | ACTGG | 1 cut(s) | 101 |
| BseCI | ATCGAT | 1 cut(s) | 246 |
| BseDI | CCNNGG | 1 cut(s) | 351 |
| BseGI | GGATG | 3 cut(s) | 33, 321, 449 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 401 |
| BseNI | ACTGG | 1 cut(s) | 101 |
| Bsh1236I | CGCG | 1 cut(s) | 390 |
| BshFI | GGCC | 1 cut(s) | 552 |
| BshNI | GGYRCC | 3 cut(s) | 405, 479, 563 |
| BshVI | ATCGAT | 1 cut(s) | 246 |
| BsiHKAI | GWGCWC | 1 cut(s) | 285 |
| BslFI | GGGAC | 1 cut(s) | 377 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 401 |
| BsmAI | GTCTC | 1 cut(s) | 13 |
| BsmFI | GGGAC | 1 cut(s) | 377 |
| BsnI | GGCC | 1 cut(s) | 552 |
| Bso31I | GGTCTC | 1 cut(s) | 13 |
| Bsp1286I | GDGCHC | 1 cut(s) | 285 |
| Bsp143I | GATC | 3 cut(s) | 165, 347, 661 |
| BspACI | CCGC | 2 cut(s) | 82, 484 |
| BspANI | GGCC | 1 cut(s) | 552 |
| BspDI | ATCGAT | 1 cut(s) | 246 |
| BspFNI | CGCG | 1 cut(s) | 390 |
| BspLI | GGNNCC | 4 cut(s) | 407, 481, 506, 565 |
| BspPI | GGATC | 1 cut(s) | 342 |
| BspT107I | GGYRCC | 3 cut(s) | 405, 479, 563 |
| BspTNI | GGTCTC | 1 cut(s) | 13 |
| BsrI | ACTGG | 1 cut(s) | 101 |
| BssECI | CCNNGG | 1 cut(s) | 351 |
| BssMI | GATC | 3 cut(s) | 165, 347, 661 |
| BssNI | GRCGYC | 1 cut(s) | 564 |
| Bst6I | CTCTTC | 1 cut(s) | 505 |
| BstACI | GRCGYC | 1 cut(s) | 564 |
| BstDEI | CTNAG | 2 cut(s) | 428, 576 |
| BstDSI | CCRYGG | 1 cut(s) | 351 |
| BstF5I | GGATG | 3 cut(s) | 33, 321, 449 |
| BstFNI | CGCG | 1 cut(s) | 390 |
| BstH2I | RGCGCY | 2 cut(s) | 567, 608 |
| BstHHI | GCGC | 2 cut(s) | 566, 607 |
| BstKTI | GATC | 3 cut(s) | 168, 350, 664 |
| BstMAI | GTCTC | 1 cut(s) | 13 |
| BstMBI | GATC | 3 cut(s) | 165, 347, 661 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 602 |
| BstUI | CGCG | 1 cut(s) | 390 |
| BstV2I | GAAGAC | 1 cut(s) | 197 |
| BstX2I | RGATCY | 1 cut(s) | 347 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 560 |
| BstYI | RGATCY | 1 cut(s) | 347 |
| Bsu15I | ATCGAT | 1 cut(s) | 246 |
| BsuRI | GGCC | 1 cut(s) | 552 |
| BsuTUI | ATCGAT | 1 cut(s) | 246 |
| BtgI | CCRYGG | 1 cut(s) | 351 |
| BtgZI | GCGATG | 1 cut(s) | 191 |
| BtsCI | GGATG | 3 cut(s) | 33, 321, 449 |
| BtsIMutI | CAGTG | 1 cut(s) | 303 |
| CfoI | GCGC | 2 cut(s) | 566, 607 |
| Cfr13I | GGNCC | 1 cut(s) | 452 |
| ClaI | ATCGAT | 1 cut(s) | 246 |
| CseI | GACGC | 2 cut(s) | 379, 602 |
| Csp6I | GTAC | 2 cut(s) | 406, 480 |
| CviAII | CATG | 2 cut(s) | 314, 554 |
| CviJI | RGCY | 6 cut(s) | 78, 100, 283, 293, 552, 582 |
| CviKI_1 | RGCY | 6 cut(s) | 78, 100, 283, 293, 552, 582 |
| CviQI | GTAC | 2 cut(s) | 406, 480 |
| DdeI | CTNAG | 2 cut(s) | 428, 576 |
| DinI | GGCGCC | 1 cut(s) | 565 |
| DpnI | GATC | 3 cut(s) | 167, 349, 663 |
| DpnII | GATC | 3 cut(s) | 165, 347, 661 |
| EaeI | YGGCCR | 1 cut(s) | 550 |
| Eam1104I | CTCTTC | 1 cut(s) | 505 |
| EarI | CTCTTC | 1 cut(s) | 505 |
| Ecl136II | GAGCTC | 1 cut(s) | 283 |
| Eco24I | GRGCYC | 1 cut(s) | 285 |
| Eco31I | GGTCTC | 1 cut(s) | 13 |
| Eco47I | GGWCC | 1 cut(s) | 452 |
| Eco53kI | GAGCTC | 1 cut(s) | 283 |
| EcoICRI | GAGCTC | 1 cut(s) | 283 |
| EcoT38I | GRGCYC | 1 cut(s) | 285 |
| EgeI | GGCGCC | 1 cut(s) | 565 |
| EheI | GGCGCC | 1 cut(s) | 565 |
| FaeI | CATG | 2 cut(s) | 317, 557 |
| FaqI | GGGAC | 1 cut(s) | 377 |
| FatI | CATG | 2 cut(s) | 313, 553 |
| FauI | CCCGC | 1 cut(s) | 491 |
| FbaI | TGATCA | 1 cut(s) | 661 |
| FokI | GGATG | 3 cut(s) | 20, 308, 456 |
| FriOI | GRGCYC | 1 cut(s) | 285 |
| FspBI | CTAG | 1 cut(s) | 59 |
| GlaI | GCGC | 2 cut(s) | 565, 606 |
| HaeII | RGCGCY | 2 cut(s) | 567, 608 |
| HaeIII | GGCC | 1 cut(s) | 552 |
| HgaI | GACGC | 2 cut(s) | 379, 602 |
| HhaI | GCGC | 2 cut(s) | 566, 607 |
| Hin1I | GRCGYC | 1 cut(s) | 564 |
| Hin1II | CATG | 2 cut(s) | 317, 557 |
| Hin6I | GCGC | 2 cut(s) | 564, 605 |
| HinP1I | GCGC | 2 cut(s) | 564, 605 |
| HincII | GTYRAC | 1 cut(s) | 518 |
| HindII | GTYRAC | 1 cut(s) | 518 |
| HinfI | GANTC | 5 cut(s) | 41, 193, 243, 264, 374 |
| Hpy166II | GTNNAC | 1 cut(s) | 518 |
| Hpy188I | TCNGA | 2 cut(s) | 121, 661 |
| Hpy188III | TCNNGA | 5 cut(s) | 53, 107, 345, 371, 645 |
| Hpy8I | GTNNAC | 1 cut(s) | 518 |
| HpyAV | CCTTC | 1 cut(s) | 470 |
| HpyCH4IV | ACGT | 1 cut(s) | 520 |
| HpyCH4V | TGCA | 2 cut(s) | 218, 257 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 602 |
| HpyF3I | CTNAG | 2 cut(s) | 428, 576 |
| HpySE526I | ACGT | 1 cut(s) | 520 |
| Hsp92I | GRCGYC | 1 cut(s) | 564 |
| Hsp92II | CATG | 2 cut(s) | 317, 557 |
| HspAI | GCGC | 2 cut(s) | 564, 605 |
| KasI | GGCGCC | 1 cut(s) | 563 |
| KpnI | GGTACC | 2 cut(s) | 409, 483 |
| Ksp22I | TGATCA | 1 cut(s) | 661 |
| Kzo9I | GATC | 3 cut(s) | 165, 347, 661 |
| LmnI | GCTCC | 1 cut(s) | 290 |
| LpnPI | CCDG | 5 cut(s) | 59, 114, 384, 435, 534 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MaeII | ACGT | 1 cut(s) | 520 |
| MaeIII | GTNAC | 3 cut(s) | 38, 250, 301 |
| MalI | GATC | 3 cut(s) | 167, 349, 663 |
| MboI | GATC | 3 cut(s) | 165, 347, 661 |
| MboII | GAAGA | 3 cut(s) | 202, 343, 522 |
| MflI | RGATCY | 1 cut(s) | 347 |
| MhlI | GDGCHC | 1 cut(s) | 285 |
| MlsI | TGGCCA | 1 cut(s) | 552 |
| MluCI | AATT | 4 cut(s) | 115, 149, 340, 379 |
| MluNI | TGGCCA | 1 cut(s) | 552 |
| Mly113I | GGCGCC | 1 cut(s) | 564 |
| MlyI | GAGTC | 2 cut(s) | 35, 187 |
| MnlI | CCTC | 7 cut(s) | 89, 395, 506, 526, 530, 556, 618 |
| Mox20I | TGGCCA | 1 cut(s) | 552 |
| MroXI | GAANNNNTTC | 1 cut(s) | 126 |
| MscI | TGGCCA | 1 cut(s) | 552 |
| MseI | TTAA | 2 cut(s) | 135, 143 |
| MslI | CAYNNNNRTG | 4 cut(s) | 326, 442, 558, 588 |
| Msp20I | TGGCCA | 1 cut(s) | 552 |
| MvnI | CGCG | 1 cut(s) | 390 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 602 |
| NarI | GGCGCC | 1 cut(s) | 564 |
| NdeII | GATC | 3 cut(s) | 165, 347, 661 |
| NlaIII | CATG | 2 cut(s) | 317, 557 |
| NlaIV | GGNNCC | 4 cut(s) | 407, 481, 506, 565 |
| NmuCI | GTSAC | 2 cut(s) | 38, 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 126 |
| PfeI | GAWTC | 3 cut(s) | 243, 264, 374 |
| PleI | GAGTC | 2 cut(s) | 35, 187 |
| PluTI | GGCGCC | 1 cut(s) | 567 |
| PpsI | GAGTC | 2 cut(s) | 35, 187 |
| Psp124BI | GAGCTC | 1 cut(s) | 285 |
| PspN4I | GGNNCC | 4 cut(s) | 407, 481, 506, 565 |
| PspPI | GGNCC | 1 cut(s) | 452 |
| PsuI | RGATCY | 1 cut(s) | 347 |
| RsaI | GTAC | 2 cut(s) | 407, 481 |
| RsaNI | GTAC | 2 cut(s) | 406, 480 |
| RseI | CAYNNNNRTG | 4 cut(s) | 326, 442, 558, 588 |
| SacI | GAGCTC | 1 cut(s) | 285 |
| SaqAI | TTAA | 2 cut(s) | 135, 143 |
| Sau3AI | GATC | 3 cut(s) | 165, 347, 661 |
| Sau96I | GGNCC | 1 cut(s) | 452 |
| SchI | GAGTC | 2 cut(s) | 35, 187 |
| SduI | GDGCHC | 1 cut(s) | 285 |
| SetI | ASST | 7 cut(s) | 60, 275, 285, 295, 481, 517, 523 |
| SfoI | GGCGCC | 1 cut(s) | 565 |
| SinI | GGWCC | 1 cut(s) | 452 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 326, 442, 558, 588 |
| Sse9I | AATT | 4 cut(s) | 115, 149, 340, 379 |
| SsiI | CCGC | 2 cut(s) | 82, 484 |
| SspDI | GGCGCC | 1 cut(s) | 563 |
| SspMI | CTAG | 1 cut(s) | 59 |
| SstI | GAGCTC | 1 cut(s) | 285 |
| TaiI | ACGT | 1 cut(s) | 523 |
| TaqI | TCGA | 4 cut(s) | 241, 246, 344, 646 |
| TasI | AATT | 4 cut(s) | 115, 149, 340, 379 |
| TfiI | GAWTC | 3 cut(s) | 243, 264, 374 |
| Tru1I | TTAA | 2 cut(s) | 135, 143 |
| Tru9I | TTAA | 2 cut(s) | 135, 143 |
| TscAI | CASTG | 1 cut(s) | 310 |
| TseFI | GTSAC | 2 cut(s) | 38, 301 |
| Tsp45I | GTSAC | 2 cut(s) | 38, 301 |
| TspDTI | ATGAA | 2 cut(s) | 311, 589 |
| TspGWI | ACGGA | 3 cut(s) | 26, 340, 517 |
| TspRI | CASTG | 1 cut(s) | 310 |
| VpaK11BI | GGWCC | 1 cut(s) | 452 |
| XapI | RAATTY | 1 cut(s) | 149 |
| XmnI | GAANNNNTTC | 1 cut(s) | 126 |
| XspI | CTAG | 1 cut(s) | 59 |