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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| AccB1I | GGYRCC | 3 cut(s) | 456, 614, 689 |
| AccBSI | CCGCTC | 1 cut(s) | 13 |
| AccII | CGCG | 1 cut(s) | 441 |
| AccIII | TCCGGA | 1 cut(s) | 421 |
| AciI | CCGC | 3 cut(s) | 11, 133, 693 |
| AclWI | GGATC | 3 cut(s) | 2, 323, 393 |
| AcoI | YGGCCR | 1 cut(s) | 601 |
| AcsI | RAATTY | 3 cut(s) | 200, 812, 838 |
| AcyI | GRCGYC | 1 cut(s) | 615 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 452, 715, 719 |
| AgsI | TTSAA | 5 cut(s) | 71, 148, 359, 652, 806 |
| AjnI | CCWGG | 2 cut(s) | 712, 775 |
| AluBI | AGCT | 2 cut(s) | 334, 344 |
| AluI | AGCT | 2 cut(s) | 334, 344 |
| Alw26I | GTCTC | 2 cut(s) | 64, 268 |
| AlwI | GGATC | 3 cut(s) | 2, 323, 393 |
| Aor13HI | TCCGGA | 1 cut(s) | 421 |
| AoxI | GGCC | 2 cut(s) | 601, 827 |
| ApeKI | GCWGC | 1 cut(s) | 785 |
| ApoI | RAATTY | 3 cut(s) | 200, 812, 838 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 2 cut(s) | 443, 617 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AsuHPI | GGTGA | 3 cut(s) | 776, 784, 791 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| BalI | TGGCCA | 1 cut(s) | 603 |
| BanI | GGYRCC | 3 cut(s) | 456, 614, 689 |
| BanII | GRGCYC | 1 cut(s) | 775 |
| BbsI | GAAGAC | 2 cut(s) | 45, 248 |
| BbvI | GCAGC | 1 cut(s) | 772 |
| BccI | CCATC | 6 cut(s) | 114, 268, 642, 680, 761, 765 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 287, 321 |
| BciT130I | CCWGG | 2 cut(s) | 714, 777 |
| BciVI | GTATCC | 1 cut(s) | 478 |
| BcoDI | GTCTC | 2 cut(s) | 64, 268 |
| BfaI | CTAG | 2 cut(s) | 110, 492 |
| BfmI | CTRYAG | 1 cut(s) | 306 |
| BfoI | RGCGCY | 1 cut(s) | 618 |
| BfuI | GTATCC | 1 cut(s) | 478 |
| BisI | GCNGC | 1 cut(s) | 786 |
| BlsI | GCNGC | 1 cut(s) | 787 |
| Bme1390I | CCNGG | 2 cut(s) | 714, 777 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 5 cut(s) | 458, 557, 616, 691, 772 |
| BmrFI | CCNGG | 2 cut(s) | 714, 777 |
| BmsI | GCATC | 1 cut(s) | 772 |
| BpiI | GAAGAC | 2 cut(s) | 45, 248 |
| Bpu10I | CCTNAGC | 1 cut(s) | 824 |
| Bsa29I | ATCGAT | 1 cut(s) | 297 |
| BsaHI | GRCGYC | 1 cut(s) | 615 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| BsaJI | CCNNGG | 3 cut(s) | 713, 744, 775 |
| BsaWI | WCCGGW | 1 cut(s) | 421 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 452, 715, 719 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| BseAI | TCCGGA | 1 cut(s) | 421 |
| BseBI | CCWGG | 2 cut(s) | 714, 777 |
| BseCI | ATCGAT | 1 cut(s) | 297 |
| BseDI | CCNNGG | 3 cut(s) | 713, 744, 775 |
| BseGI | GGATG | 2 cut(s) | 10, 372 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 452, 715, 719 |
| BseMII | CTCAG | 1 cut(s) | 838 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BseXI | GCAGC | 1 cut(s) | 772 |
| Bsh1236I | CGCG | 1 cut(s) | 441 |
| BshFI | GGCC | 2 cut(s) | 603, 829 |
| BshNI | GGYRCC | 3 cut(s) | 456, 614, 689 |
| BshVI | ATCGAT | 1 cut(s) | 297 |
| BsiSI | CCGG | 1 cut(s) | 422 |
| BslFI | GGGAC | 1 cut(s) | 713 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 452, 715, 719 |
| BsmAI | GTCTC | 2 cut(s) | 64, 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 1 cut(s) | 713 |
| BsnI | GGCC | 2 cut(s) | 603, 829 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp1286I | GDGCHC | 1 cut(s) | 775 |
| Bsp13I | TCCGGA | 1 cut(s) | 421 |
| Bsp143I | GATC | 4 cut(s) | 7, 216, 315, 398 |
| BspACI | CCGC | 3 cut(s) | 11, 133, 693 |
| BspANI | GGCC | 2 cut(s) | 603, 829 |
| BspCNI | CTCAG | 1 cut(s) | 837 |
| BspDI | ATCGAT | 1 cut(s) | 297 |
| BspEI | TCCGGA | 1 cut(s) | 421 |
| BspFNI | CGCG | 1 cut(s) | 441 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 5 cut(s) | 458, 557, 616, 691, 772 |
| BspMAI | CTGCAG | 1 cut(s) | 310 |
| BspPI | GGATC | 3 cut(s) | 2, 323, 393 |
| BspT107I | GGYRCC | 3 cut(s) | 456, 614, 689 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrBI | CCGCTC | 1 cut(s) | 13 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 3 cut(s) | 713, 744, 775 |
| BssMI | GATC | 4 cut(s) | 7, 216, 315, 398 |
| BssNI | GRCGYC | 1 cut(s) | 615 |
| BssT1I | CCWWGG | 1 cut(s) | 744 |
| Bst2UI | CCWGG | 2 cut(s) | 714, 777 |
| Bst4CI | ACNGT | 1 cut(s) | 727 |
| Bst6I | CTCTTC | 1 cut(s) | 556 |
| BstACI | GRCGYC | 1 cut(s) | 615 |
| BstC8I | GCNNGC | 1 cut(s) | 721 |
| BstDEI | CTNAG | 5 cut(s) | 282, 479, 627, 824, 891 |
| BstEII | GGTNACC | 1 cut(s) | 530 |
| BstF5I | GGATG | 2 cut(s) | 10, 372 |
| BstFNI | CGCG | 1 cut(s) | 441 |
| BstH2I | RGCGCY | 1 cut(s) | 618 |
| BstHHI | GCGC | 2 cut(s) | 443, 617 |
| BstKTI | GATC | 4 cut(s) | 10, 219, 318, 401 |
| BstMAI | GTCTC | 2 cut(s) | 64, 268 |
| BstMBI | GATC | 4 cut(s) | 7, 216, 315, 398 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 859 |
| BstNI | CCWGG | 2 cut(s) | 714, 777 |
| BstPI | GGTNACC | 1 cut(s) | 530 |
| BstSCI | CCNGG | 2 cut(s) | 712, 775 |
| BstSFI | CTRYAG | 1 cut(s) | 306 |
| BstUI | CGCG | 1 cut(s) | 441 |
| BstV1I | GCAGC | 1 cut(s) | 772 |
| BstV2I | GAAGAC | 2 cut(s) | 45, 248 |
| BstX2I | RGATCY | 1 cut(s) | 398 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 611, 713 |
| BstYI | RGATCY | 1 cut(s) | 398 |
| Bsu15I | ATCGAT | 1 cut(s) | 297 |
| BsuI | GTATCC | 1 cut(s) | 478 |
| BsuRI | GGCC | 2 cut(s) | 603, 829 |
| BsuTUI | ATCGAT | 1 cut(s) | 297 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 2 cut(s) | 10, 372 |
| Cac8I | GCNNGC | 1 cut(s) | 721 |
| CciI | TCATGA | 1 cut(s) | 328 |
| CfoI | GCGC | 2 cut(s) | 443, 617 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| ClaI | ATCGAT | 1 cut(s) | 297 |
| CseI | GACGC | 2 cut(s) | 653, 742 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 5 cut(s) | 329, 365, 605, 737, 761 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 5 cut(s) | 282, 479, 627, 824, 891 |
| DinI | GGCGCC | 1 cut(s) | 616 |
| DpnI | GATC | 4 cut(s) | 9, 218, 317, 400 |
| DpnII | GATC | 4 cut(s) | 7, 216, 315, 398 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| EaeI | YGGCCR | 1 cut(s) | 601 |
| Eam1104I | CTCTTC | 1 cut(s) | 556 |
| EarI | CTCTTC | 1 cut(s) | 556 |
| Eco130I | CCWWGG | 1 cut(s) | 744 |
| Eco147I | AGGCCT | 1 cut(s) | 829 |
| Eco24I | GRGCYC | 1 cut(s) | 775 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| Eco91I | GGTNACC | 1 cut(s) | 530 |
| EcoO65I | GGTNACC | 1 cut(s) | 530 |
| EcoRI | GAATTC | 1 cut(s) | 200 |
| EcoRII | CCWGG | 2 cut(s) | 712, 775 |
| EcoT14I | CCWWGG | 1 cut(s) | 744 |
| EcoT38I | GRGCYC | 1 cut(s) | 775 |
| EgeI | GGCGCC | 1 cut(s) | 616 |
| EheI | GGCGCC | 1 cut(s) | 616 |
| ErhI | CCWWGG | 1 cut(s) | 744 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 5 cut(s) | 332, 368, 608, 740, 764 |
| FaqI | GGGAC | 1 cut(s) | 713 |
| FatI | CATG | 5 cut(s) | 328, 364, 604, 736, 760 |
| Fnu4HI | GCNGC | 1 cut(s) | 786 |
| FokI | GGATG | 2 cut(s) | 17, 359 |
| FriOI | GRGCYC | 1 cut(s) | 775 |
| Fsp4HI | GCNGC | 1 cut(s) | 786 |
| FspBI | CTAG | 2 cut(s) | 110, 492 |
| GlaI | GCGC | 2 cut(s) | 442, 616 |
| GluI | GCNGC | 1 cut(s) | 786 |
| HaeII | RGCGCY | 1 cut(s) | 618 |
| HaeIII | GGCC | 2 cut(s) | 603, 829 |
| HapII | CCGG | 1 cut(s) | 422 |
| HgaI | GACGC | 2 cut(s) | 653, 742 |
| HhaI | GCGC | 2 cut(s) | 443, 617 |
| Hin1I | GRCGYC | 1 cut(s) | 615 |
| Hin1II | CATG | 5 cut(s) | 332, 368, 608, 740, 764 |
| Hin6I | GCGC | 2 cut(s) | 441, 615 |
| HinP1I | GCGC | 2 cut(s) | 441, 615 |
| HincII | GTYRAC | 1 cut(s) | 569 |
| HindII | GTYRAC | 1 cut(s) | 569 |
| HinfI | GANTC | 4 cut(s) | 92, 244, 294, 425 |
| HpaII | CCGG | 1 cut(s) | 422 |
| HphI | GGTGA | 3 cut(s) | 776, 784, 791 |
| Hpy166II | GTNNAC | 2 cut(s) | 569, 703 |
| Hpy188I | TCNGA | 1 cut(s) | 172 |
| Hpy188III | TCNNGA | 6 cut(s) | 104, 158, 329, 396, 422, 492 |
| Hpy8I | GTNNAC | 2 cut(s) | 569, 703 |
| HpyAV | CCTTC | 2 cut(s) | 265, 521 |
| HpyCH4III | ACNGT | 1 cut(s) | 727 |
| HpyCH4IV | ACGT | 3 cut(s) | 84, 496, 571 |
| HpyCH4V | TGCA | 3 cut(s) | 269, 308, 788 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 859 |
| HpyF3I | CTNAG | 5 cut(s) | 282, 479, 627, 824, 891 |
| HpySE526I | ACGT | 3 cut(s) | 84, 496, 571 |
| Hsp92I | GRCGYC | 1 cut(s) | 615 |
| Hsp92II | CATG | 5 cut(s) | 332, 368, 608, 740, 764 |
| HspAI | GCGC | 2 cut(s) | 441, 615 |
| KasI | GGCGCC | 1 cut(s) | 614 |
| Kpn2I | TCCGGA | 1 cut(s) | 421 |
| Kzo9I | GATC | 4 cut(s) | 7, 216, 315, 398 |
| LmnI | GCTCC | 2 cut(s) | 18, 770 |
| Lsp1109I | GCAGC | 1 cut(s) | 772 |
| LweI | GCATC | 1 cut(s) | 772 |
| MaeI | CTAG | 2 cut(s) | 110, 492 |
| MaeII | ACGT | 3 cut(s) | 84, 496, 571 |
| MaeIII | GTNAC | 3 cut(s) | 89, 301, 530 |
| MalI | GATC | 4 cut(s) | 9, 218, 317, 400 |
| MbiI | CCGCTC | 1 cut(s) | 13 |
| MboI | GATC | 4 cut(s) | 7, 216, 315, 398 |
| MboII | GAAGA | 5 cut(s) | 47, 50, 253, 394, 573 |
| MflI | RGATCY | 1 cut(s) | 398 |
| MhlI | GDGCHC | 1 cut(s) | 775 |
| MlsI | TGGCCA | 1 cut(s) | 603 |
| MluCI | AATT | 5 cut(s) | 200, 391, 430, 812, 838 |
| MluNI | TGGCCA | 1 cut(s) | 603 |
| Mly113I | GGCGCC | 1 cut(s) | 615 |
| MlyI | GAGTC | 2 cut(s) | 86, 238 |
| Mox20I | TGGCCA | 1 cut(s) | 603 |
| MroI | TCCGGA | 1 cut(s) | 421 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MscI | TGGCCA | 1 cut(s) | 603 |
| MseI | TTAA | 1 cut(s) | 186 |
| MslI | CAYNNNNRTG | 5 cut(s) | 377, 609, 639, 762, 765 |
| Msp20I | TGGCCA | 1 cut(s) | 603 |
| MspI | CCGG | 1 cut(s) | 422 |
| MspR9I | CCNGG | 2 cut(s) | 714, 777 |
| MvaI | CCWGG | 2 cut(s) | 714, 777 |
| MvnI | CGCG | 1 cut(s) | 441 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 859 |
| NarI | GGCGCC | 1 cut(s) | 615 |
| NdeII | GATC | 4 cut(s) | 7, 216, 315, 398 |
| NlaIII | CATG | 5 cut(s) | 332, 368, 608, 740, 764 |
| NlaIV | GGNNCC | 5 cut(s) | 458, 557, 616, 691, 772 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PceI | AGGCCT | 1 cut(s) | 829 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 2 cut(s) | 294, 425 |
| PkrI | GCNGC | 1 cut(s) | 787 |
| PleI | GAGTC | 2 cut(s) | 86, 238 |
| PluTI | GGCGCC | 1 cut(s) | 618 |
| PpsI | GAGTC | 2 cut(s) | 86, 238 |
| Psp6I | CCWGG | 2 cut(s) | 712, 775 |
| PspEI | GGTNACC | 1 cut(s) | 530 |
| PspGI | CCWGG | 2 cut(s) | 712, 775 |
| PspN4I | GGNNCC | 5 cut(s) | 458, 557, 616, 691, 772 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| PstI | CTGCAG | 1 cut(s) | 310 |
| PsuI | RGATCY | 1 cut(s) | 398 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| RseI | CAYNNNNRTG | 5 cut(s) | 377, 609, 639, 762, 765 |
| SaqAI | TTAA | 1 cut(s) | 186 |
| SatI | GCNGC | 1 cut(s) | 786 |
| Sau3AI | GATC | 4 cut(s) | 7, 216, 315, 398 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SchI | GAGTC | 2 cut(s) | 86, 238 |
| ScrFI | CCNGG | 2 cut(s) | 714, 777 |
| SduI | GDGCHC | 1 cut(s) | 775 |
| SfaNI | GCATC | 1 cut(s) | 772 |
| SfcI | CTRYAG | 1 cut(s) | 306 |
| SfoI | GGCGCC | 1 cut(s) | 616 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 377, 609, 639, 762, 765 |
| Sse9I | AATT | 5 cut(s) | 200, 391, 430, 812, 838 |
| SseBI | AGGCCT | 1 cut(s) | 829 |
| SsiI | CCGC | 3 cut(s) | 11, 133, 693 |
| SspDI | GGCGCC | 1 cut(s) | 614 |
| SspMI | CTAG | 2 cut(s) | 110, 492 |
| StuI | AGGCCT | 1 cut(s) | 829 |
| StyD4I | CCNGG | 2 cut(s) | 712, 775 |
| StyI | CCWWGG | 1 cut(s) | 744 |
| TaaI | ACNGT | 1 cut(s) | 727 |
| TaiI | ACGT | 3 cut(s) | 87, 499, 574 |
| TaqI | TCGA | 3 cut(s) | 292, 297, 395 |
| TasI | AATT | 5 cut(s) | 200, 391, 430, 812, 838 |
| TfiI | GAWTC | 2 cut(s) | 294, 425 |
| Tru1I | TTAA | 1 cut(s) | 186 |
| Tru9I | TTAA | 1 cut(s) | 186 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| TseI | GCWGC | 1 cut(s) | 785 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 5 cut(s) | 44, 48, 317, 362, 806 |
| TspGWI | ACGGA | 5 cut(s) | 77, 328, 391, 568, 688 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| XapI | RAATTY | 3 cut(s) | 200, 812, 838 |
| XbaI | TCTAGA | 1 cut(s) | 491 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 710, 716, 764 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 2 cut(s) | 110, 492 |