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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 897 |
| AccB1I | GGYRCC | 1 cut(s) | 1012 |
| AccII | CGCG | 2 cut(s) | 837, 853 |
| AccIII | TCCGGA | 1 cut(s) | 817 |
| AciI | CCGC | 5 cut(s) | 221, 224, 265, 663, 931 |
| AclWI | GGATC | 4 cut(s) | 364, 376, 377, 1031 |
| AcuI | CTGAAG | 1 cut(s) | 494 |
| AcyI | GRCGYC | 1 cut(s) | 1013 |
| AfaI | GTAC | 2 cut(s) | 379, 521 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 261, 331, 919 |
| AflII | CTTAAG | 1 cut(s) | 356 |
| AflIII | ACRYGT | 1 cut(s) | 967 |
| AgsI | TTSAA | 2 cut(s) | 235, 434 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 378, 410 |
| AluBI | AGCT | 4 cut(s) | 291, 422, 730, 752 |
| AluI | AGCT | 4 cut(s) | 291, 422, 730, 752 |
| Alw26I | GTCTC | 2 cut(s) | 299, 664 |
| AlwI | GGATC | 4 cut(s) | 364, 376, 377, 1031 |
| Ama87I | CYCGRG | 1 cut(s) | 560 |
| Aor13HI | TCCGGA | 1 cut(s) | 817 |
| AoxI | GGCC | 2 cut(s) | 136, 215 |
| ApeKI | GCWGC | 1 cut(s) | 565 |
| AspLEI | GCGC | 6 cut(s) | 348, 839, 853, 855, 1015, 1045 |
| AspS9I | GGNCC | 2 cut(s) | 216, 334 |
| AsuHPI | GGTGA | 1 cut(s) | 110 |
| AvaI | CYCGRG | 1 cut(s) | 560 |
| AvaII | GGWCC | 1 cut(s) | 334 |
| AxyI | CCTNAGG | 1 cut(s) | 870 |
| BamHI | GGATCC | 1 cut(s) | 369 |
| BanI | GGYRCC | 1 cut(s) | 1012 |
| BbsI | GAAGAC | 2 cut(s) | 540, 644 |
| BbvI | GCAGC | 1 cut(s) | 577 |
| BccI | CCATC | 2 cut(s) | 115, 1040 |
| BceAI | ACGGC | 1 cut(s) | 123 |
| BcoDI | GTCTC | 2 cut(s) | 299, 664 |
| BfaI | CTAG | 4 cut(s) | 248, 302, 792, 888 |
| BfmI | CTRYAG | 1 cut(s) | 43 |
| BfoI | RGCGCY | 2 cut(s) | 1016, 1046 |
| BfrI | CTTAAG | 1 cut(s) | 356 |
| BglII | AGATCT | 1 cut(s) | 105 |
| BisI | GCNGC | 2 cut(s) | 224, 566 |
| BlsI | GCNGC | 2 cut(s) | 225, 567 |
| Bme18I | GGWCC | 1 cut(s) | 334 |
| BmeT110I | CYCGRG | 1 cut(s) | 560 |
| BmgT120I | GGNCC | 2 cut(s) | 216, 334 |
| BmiI | GGNNCC | 6 cut(s) | 218, 335, 371, 739, 953, 1014 |
| BmrI | ACTGGG | 1 cut(s) | 139 |
| BmsI | GCATC | 3 cut(s) | 148, 493, 720 |
| BmuI | ACTGGG | 1 cut(s) | 139 |
| BpiI | GAAGAC | 2 cut(s) | 540, 644 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 92, 124, 280, 312 |
| BpmI | CTGGAG | 1 cut(s) | 129 |
| Bpu10I | CCTNAGC | 1 cut(s) | 31 |
| BsaBI | GATNNNNATC | 1 cut(s) | 629 |
| BsaHI | GRCGYC | 1 cut(s) | 1013 |
| BsaJI | CCNNGG | 2 cut(s) | 955, 1019 |
| BsaWI | WCCGGW | 1 cut(s) | 817 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 261, 331, 919 |
| Bse118I | RCCGGY | 1 cut(s) | 261 |
| Bse1I | ACTGG | 1 cut(s) | 134 |
| Bse21I | CCTNAGG | 1 cut(s) | 870 |
| Bse3DI | GCAATG | 1 cut(s) | 583 |
| Bse8I | GATNNNNATC | 1 cut(s) | 629 |
| BseAI | TCCGGA | 1 cut(s) | 817 |
| BseDI | CCNNGG | 2 cut(s) | 955, 1019 |
| BseGI | GGATG | 2 cut(s) | 273, 1032 |
| BseJI | GATNNNNATC | 1 cut(s) | 629 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 261, 331, 919 |
| BseMI | GCAATG | 1 cut(s) | 583 |
| BseMII | CTCAG | 2 cut(s) | 45, 365 |
| BseNI | ACTGG | 1 cut(s) | 134 |
| BsePI | GCGCGC | 1 cut(s) | 851 |
| BseRI | GAGGAG | 1 cut(s) | 402 |
| BseXI | GCAGC | 1 cut(s) | 577 |
| BsgI | GTGCAG | 1 cut(s) | 336 |
| Bsh1236I | CGCG | 2 cut(s) | 837, 853 |
| BshFI | GGCC | 2 cut(s) | 138, 217 |
| BshNI | GGYRCC | 1 cut(s) | 1012 |
| BsiHKCI | CYCGRG | 1 cut(s) | 560 |
| BsiSI | CCGG | 4 cut(s) | 262, 705, 818, 998 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 261, 331, 919 |
| BsmAI | GTCTC | 2 cut(s) | 299, 664 |
| BsmBI | CGTCTC | 1 cut(s) | 664 |
| BsnI | GGCC | 2 cut(s) | 138, 217 |
| BsoBI | CYCGRG | 1 cut(s) | 560 |
| Bsp13I | TCCGGA | 1 cut(s) | 817 |
| Bsp143I | GATC | 6 cut(s) | 6, 105, 369, 381, 630, 1023 |
| BspACI | CCGC | 5 cut(s) | 221, 224, 265, 663, 931 |
| BspANI | GGCC | 2 cut(s) | 138, 217 |
| BspCNI | CTCAG | 2 cut(s) | 44, 366 |
| BspEI | TCCGGA | 1 cut(s) | 817 |
| BspFNI | CGCG | 2 cut(s) | 837, 853 |
| BspHI | TCATGA | 1 cut(s) | 483 |
| BspLI | GGNNCC | 6 cut(s) | 218, 335, 371, 739, 953, 1014 |
| BspPI | GGATC | 4 cut(s) | 364, 376, 377, 1031 |
| BspT107I | GGYRCC | 1 cut(s) | 1012 |
| BspTI | CTTAAG | 1 cut(s) | 356 |
| BsrDI | GCAATG | 1 cut(s) | 583 |
| BsrFI | RCCGGY | 1 cut(s) | 261 |
| BsrI | ACTGG | 1 cut(s) | 134 |
| BssAI | RCCGGY | 1 cut(s) | 261 |
| BssECI | CCNNGG | 2 cut(s) | 955, 1019 |
| BssHII | GCGCGC | 1 cut(s) | 851 |
| BssMI | GATC | 6 cut(s) | 6, 105, 369, 381, 630, 1023 |
| BssNI | GRCGYC | 1 cut(s) | 1013 |
| BssT1I | CCWWGG | 1 cut(s) | 1019 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 169, 956 |
| BstACI | GRCGYC | 1 cut(s) | 1013 |
| BstAFI | CTTAAG | 1 cut(s) | 356 |
| BstC8I | GCNNGC | 2 cut(s) | 853, 945 |
| BstDEI | CTNAG | 3 cut(s) | 31, 374, 870 |
| BstDSI | CCRYGG | 1 cut(s) | 955 |
| BstF5I | GGATG | 2 cut(s) | 273, 1032 |
| BstFNI | CGCG | 2 cut(s) | 837, 853 |
| BstH2I | RGCGCY | 2 cut(s) | 1016, 1046 |
| BstHHI | GCGC | 6 cut(s) | 348, 839, 853, 855, 1015, 1045 |
| BstKTI | GATC | 6 cut(s) | 9, 108, 372, 384, 633, 1026 |
| BstMAI | GTCTC | 2 cut(s) | 299, 664 |
| BstMBI | GATC | 6 cut(s) | 6, 105, 369, 381, 630, 1023 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 223, 434, 859 |
| BstNSI | RCATGY | 1 cut(s) | 947 |
| BstSFI | CTRYAG | 1 cut(s) | 43 |
| BstUI | CGCG | 2 cut(s) | 837, 853 |
| BstV1I | GCAGC | 1 cut(s) | 577 |
| BstV2I | GAAGAC | 2 cut(s) | 540, 644 |
| BstX2I | RGATCY | 2 cut(s) | 105, 369 |
| BstYI | RGATCY | 2 cut(s) | 105, 369 |
| Bsu36I | CCTNAGG | 1 cut(s) | 870 |
| BsuRI | GGCC | 2 cut(s) | 138, 217 |
| BtgI | CCRYGG | 1 cut(s) | 955 |
| BtsCI | GGATG | 2 cut(s) | 273, 1032 |
| BtsIMutI | CAGTG | 1 cut(s) | 615 |
| Cac8I | GCNNGC | 2 cut(s) | 853, 945 |
| CciI | TCATGA | 1 cut(s) | 483 |
| CfoI | GCGC | 6 cut(s) | 348, 839, 853, 855, 1015, 1045 |
| Cfr10I | RCCGGY | 1 cut(s) | 261 |
| Cfr13I | GGNCC | 2 cut(s) | 216, 334 |
| CseI | GACGC | 1 cut(s) | 717 |
| Csp6I | GTAC | 2 cut(s) | 378, 520 |
| CviAII | CATG | 5 cut(s) | 484, 489, 496, 742, 944 |
| CviQI | GTAC | 2 cut(s) | 378, 520 |
| DdeI | CTNAG | 3 cut(s) | 31, 374, 870 |
| DinI | GGCGCC | 1 cut(s) | 1014 |
| DpnI | GATC | 6 cut(s) | 8, 107, 371, 383, 632, 1025 |
| DpnII | GATC | 6 cut(s) | 6, 105, 369, 381, 630, 1023 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 897 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 897 |
| EciI | GGCGGA | 1 cut(s) | 280 |
| Eco130I | CCWWGG | 1 cut(s) | 1019 |
| Eco47I | GGWCC | 1 cut(s) | 334 |
| Eco57I | CTGAAG | 1 cut(s) | 494 |
| Eco81I | CCTNAGG | 1 cut(s) | 870 |
| Eco88I | CYCGRG | 1 cut(s) | 560 |
| EcoT14I | CCWWGG | 1 cut(s) | 1019 |
| EgeI | GGCGCC | 1 cut(s) | 1014 |
| EheI | GGCGCC | 1 cut(s) | 1014 |
| ErhI | CCWWGG | 1 cut(s) | 1019 |
| Esp3I | CGTCTC | 1 cut(s) | 664 |
| FaeI | CATG | 5 cut(s) | 487, 492, 499, 745, 947 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 275, 307 |
| FatI | CATG | 5 cut(s) | 483, 488, 495, 741, 943 |
| FauI | CCCGC | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 224, 566 |
| FokI | GGATG | 2 cut(s) | 280, 1019 |
| Fsp4HI | GCNGC | 2 cut(s) | 224, 566 |
| FspBI | CTAG | 4 cut(s) | 248, 302, 792, 888 |
| GlaI | GCGC | 6 cut(s) | 347, 838, 852, 854, 1014, 1044 |
| GluI | GCNGC | 2 cut(s) | 224, 566 |
| GsuI | CTGGAG | 1 cut(s) | 129 |
| HaeII | RGCGCY | 2 cut(s) | 1016, 1046 |
| HaeIII | GGCC | 2 cut(s) | 138, 217 |
| HapII | CCGG | 4 cut(s) | 262, 705, 818, 998 |
| HgaI | GACGC | 1 cut(s) | 717 |
| HhaI | GCGC | 6 cut(s) | 348, 839, 853, 855, 1015, 1045 |
| Hin1I | GRCGYC | 1 cut(s) | 1013 |
| Hin1II | CATG | 5 cut(s) | 487, 492, 499, 745, 947 |
| Hin6I | GCGC | 6 cut(s) | 346, 837, 851, 853, 1013, 1043 |
| HinP1I | GCGC | 6 cut(s) | 346, 837, 851, 853, 1013, 1043 |
| HincII | GTYRAC | 1 cut(s) | 965 |
| HindII | GTYRAC | 1 cut(s) | 965 |
| HinfI | GANTC | 4 cut(s) | 74, 79, 587, 640 |
| HpaII | CCGG | 4 cut(s) | 262, 705, 818, 998 |
| HphI | GGTGA | 1 cut(s) | 110 |
| Hpy166II | GTNNAC | 1 cut(s) | 965 |
| Hpy188I | TCNGA | 4 cut(s) | 90, 399, 513, 737 |
| Hpy188III | TCNNGA | 9 cut(s) | 146, 373, 484, 584, 599, 634, 792, 818, 888 |
| Hpy8I | GTNNAC | 1 cut(s) | 965 |
| Hpy99I | CGWCG | 1 cut(s) | 121 |
| HpyAV | CCTTC | 4 cut(s) | 394, 661, 739, 917 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 169, 956 |
| HpyCH4IV | ACGT | 1 cut(s) | 967 |
| HpyCH4V | TGCA | 3 cut(s) | 317, 506, 947 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 223, 434, 859 |
| HpyF3I | CTNAG | 3 cut(s) | 31, 374, 870 |
| HpySE526I | ACGT | 1 cut(s) | 967 |
| Hsp92I | GRCGYC | 1 cut(s) | 1013 |
| Hsp92II | CATG | 5 cut(s) | 487, 492, 499, 745, 947 |
| HspAI | GCGC | 6 cut(s) | 346, 837, 851, 853, 1013, 1043 |
| KasI | GGCGCC | 1 cut(s) | 1012 |
| Kpn2I | TCCGGA | 1 cut(s) | 817 |
| Kzo9I | GATC | 6 cut(s) | 6, 105, 369, 381, 630, 1023 |
| LmnI | GCTCC | 6 cut(s) | 301, 737, 803, 844, 848, 859 |
| Lsp1109I | GCAGC | 1 cut(s) | 577 |
| LweI | GCATC | 3 cut(s) | 148, 493, 720 |
| MaeI | CTAG | 4 cut(s) | 248, 302, 792, 888 |
| MaeII | ACGT | 1 cut(s) | 967 |
| MaeIII | GTNAC | 3 cut(s) | 71, 272, 584 |
| MalI | GATC | 6 cut(s) | 8, 107, 371, 383, 632, 1025 |
| MboI | GATC | 6 cut(s) | 6, 105, 369, 381, 630, 1023 |
| MboII | GAAGA | 5 cut(s) | 115, 545, 649, 790, 985 |
| MflI | RGATCY | 2 cut(s) | 105, 369 |
| MluCI | AATT | 5 cut(s) | 393, 477, 813, 826, 883 |
| Mly113I | GGCGCC | 1 cut(s) | 1013 |
| MlyI | GAGTC | 3 cut(s) | 68, 581, 634 |
| MroI | TCCGGA | 1 cut(s) | 817 |
| MseI | TTAA | 4 cut(s) | 357, 468, 699, 825 |
| MslI | CAYNNNNRTG | 3 cut(s) | 498, 620, 773 |
| MspCI | CTTAAG | 1 cut(s) | 356 |
| MspI | CCGG | 4 cut(s) | 262, 705, 818, 998 |
| MvnI | CGCG | 2 cut(s) | 837, 853 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 223, 434, 859 |
| NarI | GGCGCC | 1 cut(s) | 1013 |
| NdeII | GATC | 6 cut(s) | 6, 105, 369, 381, 630, 1023 |
| NlaIII | CATG | 5 cut(s) | 487, 492, 499, 745, 947 |
| NlaIV | GGNNCC | 6 cut(s) | 218, 335, 371, 739, 953, 1014 |
| NmuCI | GTSAC | 2 cut(s) | 71, 584 |
| NspI | RCATGY | 1 cut(s) | 947 |
| PaeI | GCATGC | 1 cut(s) | 947 |
| PaeR7I | CTCGAG | 1 cut(s) | 560 |
| PagI | TCATGA | 1 cut(s) | 483 |
| PauI | GCGCGC | 1 cut(s) | 851 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 455 |
| PfeI | GAWTC | 1 cut(s) | 79 |
| PkrI | GCNGC | 2 cut(s) | 225, 567 |
| PleI | GAGTC | 3 cut(s) | 68, 581, 634 |
| PluTI | GGCGCC | 1 cut(s) | 1016 |
| PpsI | GAGTC | 3 cut(s) | 68, 581, 634 |
| PspN4I | GGNNCC | 6 cut(s) | 218, 335, 371, 739, 953, 1014 |
| PspPI | GGNCC | 2 cut(s) | 216, 334 |
| PspXI | VCTCGAGB | 1 cut(s) | 560 |
| PsuI | RGATCY | 2 cut(s) | 105, 369 |
| PteI | GCGCGC | 1 cut(s) | 851 |
| RsaI | GTAC | 2 cut(s) | 379, 521 |
| RsaNI | GTAC | 2 cut(s) | 378, 520 |
| RseI | CAYNNNNRTG | 3 cut(s) | 498, 620, 773 |
| SaqAI | TTAA | 4 cut(s) | 357, 468, 699, 825 |
| SatI | GCNGC | 2 cut(s) | 224, 566 |
| Sau3AI | GATC | 6 cut(s) | 6, 105, 369, 381, 630, 1023 |
| Sau96I | GGNCC | 2 cut(s) | 216, 334 |
| SchI | GAGTC | 3 cut(s) | 68, 581, 634 |
| SfaNI | GCATC | 3 cut(s) | 148, 493, 720 |
| SfcI | CTRYAG | 1 cut(s) | 43 |
| SfoI | GGCGCC | 1 cut(s) | 1014 |
| Sfr274I | CTCGAG | 1 cut(s) | 560 |
| SinI | GGWCC | 1 cut(s) | 334 |
| SlaI | CTCGAG | 1 cut(s) | 560 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 498, 620, 773 |
| SmlI | CTYRAG | 2 cut(s) | 356, 560 |
| SmoI | CTYRAG | 2 cut(s) | 356, 560 |
| SphI | GCATGC | 1 cut(s) | 947 |
| Sse9I | AATT | 5 cut(s) | 393, 477, 813, 826, 883 |
| SsiI | CCGC | 5 cut(s) | 221, 224, 265, 663, 931 |
| SspDI | GGCGCC | 1 cut(s) | 1012 |
| SspMI | CTAG | 4 cut(s) | 248, 302, 792, 888 |
| StyI | CCWWGG | 1 cut(s) | 1019 |
| TaaI | ACNGT | 3 cut(s) | 62, 169, 956 |
| TaiI | ACGT | 1 cut(s) | 970 |
| TaqI | TCGA | 4 cut(s) | 77, 116, 561, 633 |
| TasI | AATT | 5 cut(s) | 393, 477, 813, 826, 883 |
| TatI | WGTACW | 1 cut(s) | 519 |
| TauI | GCSGC | 1 cut(s) | 226 |
| TfiI | GAWTC | 1 cut(s) | 79 |
| Tru1I | TTAA | 4 cut(s) | 357, 468, 699, 825 |
| Tru9I | TTAA | 4 cut(s) | 357, 468, 699, 825 |
| TscAI | CASTG | 1 cut(s) | 622 |
| TseFI | GTSAC | 2 cut(s) | 71, 584 |
| TseI | GCWGC | 1 cut(s) | 565 |
| Tsp45I | GTSAC | 2 cut(s) | 71, 584 |
| TspDTI | ATGAA | 3 cut(s) | 477, 512, 758 |
| TspGWI | ACGGA | 2 cut(s) | 326, 964 |
| TspRI | CASTG | 1 cut(s) | 622 |
| Vha464I | CTTAAG | 1 cut(s) | 356 |
| VpaK11BI | GGWCC | 1 cut(s) | 334 |
| XbaI | TCTAGA | 2 cut(s) | 791, 887 |
| XceI | RCATGY | 1 cut(s) | 947 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 118, 546 |
| XhoI | CTCGAG | 1 cut(s) | 560 |
| XspI | CTAG | 4 cut(s) | 248, 302, 792, 888 |