gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 132, 224 |
| AclWI | GGATC | 2 cut(s) | 153, 215 |
| AcsI | RAATTY | 2 cut(s) | 23, 307 |
| AcuI | CTGAAG | 1 cut(s) | 74 |
| AfaI | GTAC | 1 cut(s) | 344 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 378 |
| AgsI | TTSAA | 5 cut(s) | 196, 299, 320, 328, 361 |
| AluBI | AGCT | 4 cut(s) | 232, 290, 353, 369 |
| AluI | AGCT | 4 cut(s) | 232, 290, 353, 369 |
| Alw21I | GWGCWC | 1 cut(s) | 292 |
| AlwI | GGATC | 2 cut(s) | 153, 215 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 412 |
| ApoI | RAATTY | 2 cut(s) | 23, 307 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 1 cut(s) | 401 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BanII | GRGCYC | 1 cut(s) | 292 |
| BbsI | GAAGAC | 1 cut(s) | 411 |
| Bbv12I | GWGCWC | 1 cut(s) | 292 |
| BbvI | GCAGC | 1 cut(s) | 399 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 239, 273 |
| BfaI | CTAG | 1 cut(s) | 416 |
| BisI | GCNGC | 1 cut(s) | 413 |
| BlsI | GCNGC | 1 cut(s) | 414 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BmsI | GCATC | 3 cut(s) | 64, 143, 267 |
| BpiI | GAAGAC | 1 cut(s) | 411 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 332, 364 |
| Bpu10I | CCTNAGC | 2 cut(s) | 244, 377 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 1 cut(s) | 103 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 378 |
| BseDI | CCNNGG | 1 cut(s) | 103 |
| BseGI | GGATG | 2 cut(s) | 134, 277 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 378 |
| BseMII | CTCAG | 1 cut(s) | 363 |
| BseXI | GCAGC | 1 cut(s) | 399 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKAI | GWGCWC | 1 cut(s) | 292 |
| BsiSI | CCGG | 1 cut(s) | 45 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 378 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 1 cut(s) | 292 |
| Bsp143I | GATC | 3 cut(s) | 145, 162, 220 |
| BspACI | CCGC | 2 cut(s) | 132, 224 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 362 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspPI | GGATC | 2 cut(s) | 153, 215 |
| BssECI | CCNNGG | 1 cut(s) | 103 |
| BssMI | GATC | 3 cut(s) | 145, 162, 220 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| Bst4CI | ACNGT | 3 cut(s) | 214, 334, 465 |
| BstC8I | GCNNGC | 1 cut(s) | 292 |
| BstDEI | CTNAG | 3 cut(s) | 244, 349, 377 |
| BstF5I | GGATG | 2 cut(s) | 134, 277 |
| BstKTI | GATC | 3 cut(s) | 148, 165, 223 |
| BstMBI | GATC | 3 cut(s) | 145, 162, 220 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNSI | RCATGY | 2 cut(s) | 412, 454 |
| BstV1I | GCAGC | 1 cut(s) | 399 |
| BstV2I | GAAGAC | 1 cut(s) | 411 |
| BstX2I | RGATCY | 1 cut(s) | 220 |
| BstYI | RGATCY | 1 cut(s) | 220 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtsCI | GGATG | 2 cut(s) | 134, 277 |
| BtsIMutI | CAGTG | 2 cut(s) | 210, 339 |
| Cac8I | GCNNGC | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| Csp6I | GTAC | 1 cut(s) | 343 |
| CviAII | CATG | 6 cut(s) | 63, 160, 179, 373, 409, 451 |
| CviJI | RGCY | 9 cut(s) | 95, 158, 232, 242, 248, 290, 353, 369, 443 |
| CviKI_1 | RGCY | 9 cut(s) | 95, 158, 232, 242, 248, 290, 353, 369, 443 |
| CviQI | GTAC | 1 cut(s) | 343 |
| DdeI | CTNAG | 3 cut(s) | 244, 349, 377 |
| DpnI | GATC | 3 cut(s) | 147, 164, 222 |
| DpnII | GATC | 3 cut(s) | 145, 162, 220 |
| Ecl136II | GAGCTC | 1 cut(s) | 290 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| Eco147I | AGGCCT | 1 cut(s) | 95 |
| Eco24I | GRGCYC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco53kI | GAGCTC | 1 cut(s) | 290 |
| Eco57I | CTGAAG | 1 cut(s) | 74 |
| EcoICRI | GAGCTC | 1 cut(s) | 290 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| EcoT38I | GRGCYC | 1 cut(s) | 292 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| FaeI | CATG | 6 cut(s) | 66, 163, 182, 376, 412, 454 |
| FaiI | YATR | 8 cut(s) | 41, 64, 161, 180, 258, 374, 410, 452 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 210, 242 |
| FatI | CATG | 6 cut(s) | 62, 159, 178, 372, 408, 450 |
| Fnu4HI | GCNGC | 1 cut(s) | 413 |
| FokI | GGATG | 2 cut(s) | 121, 284 |
| FriOI | GRGCYC | 1 cut(s) | 292 |
| Fsp4HI | GCNGC | 1 cut(s) | 413 |
| FspBI | CTAG | 1 cut(s) | 416 |
| GluI | GCNGC | 1 cut(s) | 413 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HapII | CCGG | 1 cut(s) | 45 |
| Hin1II | CATG | 6 cut(s) | 66, 163, 182, 376, 412, 454 |
| HpaII | CCGG | 1 cut(s) | 45 |
| HphI | GGTGA | 1 cut(s) | 401 |
| Hpy166II | GTNNAC | 1 cut(s) | 184 |
| Hpy188III | TCNNGA | 4 cut(s) | 185, 320, 328, 361 |
| Hpy8I | GTNNAC | 1 cut(s) | 184 |
| HpyAV | CCTTC | 3 cut(s) | 116, 182, 331 |
| HpyCH4III | ACNGT | 3 cut(s) | 214, 334, 465 |
| HpyCH4V | TGCA | 1 cut(s) | 460 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 3 cut(s) | 244, 349, 377 |
| Hsp92II | CATG | 6 cut(s) | 66, 163, 182, 376, 412, 454 |
| Kzo9I | GATC | 3 cut(s) | 145, 162, 220 |
| LmnI | GCTCC | 3 cut(s) | 285, 374, 459 |
| LpnPI | CCDG | 4 cut(s) | 58, 77, 128, 298 |
| Lsp1109I | GCAGC | 1 cut(s) | 399 |
| LweI | GCATC | 3 cut(s) | 64, 143, 267 |
| MaeI | CTAG | 1 cut(s) | 416 |
| MalI | GATC | 3 cut(s) | 147, 164, 222 |
| MboI | GATC | 3 cut(s) | 145, 162, 220 |
| MboII | GAAGA | 2 cut(s) | 80, 416 |
| MflI | RGATCY | 1 cut(s) | 220 |
| MhlI | GDGCHC | 1 cut(s) | 292 |
| MluCI | AATT | 4 cut(s) | 17, 23, 52, 307 |
| MnlI | CCTC | 3 cut(s) | 106, 218, 454 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MspI | CCGG | 1 cut(s) | 45 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeII | GATC | 3 cut(s) | 145, 162, 220 |
| NlaIII | CATG | 6 cut(s) | 66, 163, 182, 376, 412, 454 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| NmeAIII | GCCGAG | 2 cut(s) | 103, 274 |
| NspI | RCATGY | 2 cut(s) | 412, 454 |
| PceI | AGGCCT | 1 cut(s) | 95 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PkrI | GCNGC | 1 cut(s) | 414 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| Psp124BI | GAGCTC | 1 cut(s) | 292 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| PsuI | RGATCY | 1 cut(s) | 220 |
| RsaI | GTAC | 1 cut(s) | 344 |
| RsaNI | GTAC | 1 cut(s) | 343 |
| SacI | GAGCTC | 1 cut(s) | 292 |
| SatI | GCNGC | 1 cut(s) | 413 |
| Sau3AI | GATC | 3 cut(s) | 145, 162, 220 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SduI | GDGCHC | 1 cut(s) | 292 |
| SetI | ASST | 8 cut(s) | 60, 105, 210, 234, 292, 355, 371, 383 |
| SfaNI | GCATC | 3 cut(s) | 64, 143, 267 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 4 cut(s) | 17, 23, 52, 307 |
| SseBI | AGGCCT | 1 cut(s) | 95 |
| SsiI | CCGC | 2 cut(s) | 132, 224 |
| SspMI | CTAG | 1 cut(s) | 416 |
| SstI | GAGCTC | 1 cut(s) | 292 |
| StuI | AGGCCT | 1 cut(s) | 95 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 3 cut(s) | 214, 334, 465 |
| TaqI | TCGA | 1 cut(s) | 305 |
| TasI | AATT | 4 cut(s) | 17, 23, 52, 307 |
| TatI | WGTACW | 1 cut(s) | 342 |
| TscAI | CASTG | 2 cut(s) | 217, 339 |
| TseI | GCWGC | 1 cut(s) | 412 |
| TspDTI | ATGAA | 2 cut(s) | 51, 216 |
| TspGWI | ACGGA | 1 cut(s) | 161 |
| TspRI | CASTG | 2 cut(s) | 217, 339 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XapI | RAATTY | 2 cut(s) | 23, 307 |
| XceI | RCATGY | 2 cut(s) | 412, 454 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 1 cut(s) | 416 |