gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 951 |
| Acc36I | ACCTGC | 1 cut(s) | 217 |
| AccB1I | GGYRCC | 2 cut(s) | 114, 1064 |
| AccBSI | CCGCTC | 1 cut(s) | 892 |
| AccII | CGCG | 1 cut(s) | 833 |
| AccIII | TCCGGA | 1 cut(s) | 550 |
| AciI | CCGC | 6 cut(s) | 147, 191, 261, 503, 525, 892 |
| AclWI | GGATC | 5 cut(s) | 17, 691, 703, 704, 1084 |
| AcoI | YGGCCR | 1 cut(s) | 541 |
| AcsI | RAATTY | 2 cut(s) | 556, 570 |
| AcuI | CTGAAG | 2 cut(s) | 157, 1130 |
| AcyI | GRCGYC | 1 cut(s) | 115 |
| AfaI | GTAC | 5 cut(s) | 18, 81, 490, 706, 848 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 38, 111, 396, 550, 658, 973 |
| AflII | CTTAAG | 2 cut(s) | 451, 683 |
| AgsI | TTSAA | 5 cut(s) | 131, 161, 591, 743, 761 |
| AjiI | CACGTC | 1 cut(s) | 498 |
| AluBI | AGCT | 9 cut(s) | 312, 442, 463, 618, 718, 773, 794, 1053, 1084 |
| AluI | AGCT | 9 cut(s) | 312, 442, 463, 618, 718, 773, 794, 1053, 1084 |
| Alw21I | GWGCWC | 1 cut(s) | 1003 |
| Alw26I | GTCTC | 1 cut(s) | 626 |
| Alw44I | GTGCAC | 1 cut(s) | 999 |
| AlwI | GGATC | 5 cut(s) | 17, 691, 703, 704, 1084 |
| Ama87I | CYCGRG | 2 cut(s) | 234, 887 |
| Aor13HI | TCCGGA | 1 cut(s) | 550 |
| AoxI | GGCC | 4 cut(s) | 102, 230, 541, 783 |
| ApaLI | GTGCAC | 1 cut(s) | 999 |
| ApeKI | GCWGC | 4 cut(s) | 93, 123, 418, 903 |
| ApoI | RAATTY | 2 cut(s) | 556, 570 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 706, 738 |
| AspLEI | GCGC | 8 cut(s) | 13, 93, 98, 117, 644, 675, 835, 1097 |
| AspS9I | GGNCC | 8 cut(s) | 5, 45, 102, 179, 231, 661, 953, 1163 |
| AsuC2I | CCSGG | 2 cut(s) | 100, 203 |
| AsuHPI | GGTGA | 4 cut(s) | 62, 492, 956, 1098 |
| AsuNHI | GCTAGC | 1 cut(s) | 527 |
| AvaI | CYCGRG | 2 cut(s) | 234, 887 |
| AvaII | GGWCC | 6 cut(s) | 5, 45, 179, 661, 953, 1163 |
| BaeGI | GKGCMC | 1 cut(s) | 1003 |
| BalI | TGGCCA | 1 cut(s) | 543 |
| BamHI | GGATCC | 1 cut(s) | 696 |
| BanI | GGYRCC | 2 cut(s) | 114, 1064 |
| BanII | GRGCYC | 1 cut(s) | 300 |
| BbsI | GAAGAC | 1 cut(s) | 1136 |
| Bbv12I | GWGCWC | 1 cut(s) | 1003 |
| BbvI | GCAGC | 4 cut(s) | 80, 135, 430, 890 |
| BccI | CCATC | 1 cut(s) | 686 |
| BciVI | GTATCC | 1 cut(s) | 641 |
| BcnI | CCSGG | 2 cut(s) | 100, 203 |
| BcoDI | GTCTC | 1 cut(s) | 626 |
| BfaI | CTAG | 6 cut(s) | 423, 528, 564, 629, 1050, 1100 |
| BfmI | CTRYAG | 1 cut(s) | 283 |
| BfoI | RGCGCY | 2 cut(s) | 14, 118 |
| BfrI | CTTAAG | 2 cut(s) | 451, 683 |
| BfuAI | ACCTGC | 1 cut(s) | 217 |
| BfuI | GTATCC | 1 cut(s) | 641 |
| BglII | AGATCT | 1 cut(s) | 250 |
| BisI | GCNGC | 6 cut(s) | 94, 124, 419, 525, 893, 904 |
| BlsI | GCNGC | 6 cut(s) | 95, 125, 420, 526, 894, 905 |
| Bme1390I | CCNGG | 2 cut(s) | 100, 203 |
| Bme18I | GGWCC | 6 cut(s) | 5, 45, 179, 661, 953, 1163 |
| BmeT110I | CYCGRG | 2 cut(s) | 234, 887 |
| BmgBI | CACGTC | 1 cut(s) | 498 |
| BmgT120I | GGNCC | 8 cut(s) | 5, 45, 102, 179, 231, 661, 953, 1163 |
| BmrFI | CCNGG | 2 cut(s) | 100, 203 |
| BmrI | ACTGGG | 1 cut(s) | 43 |
| BmsI | GCATC | 3 cut(s) | 688, 739, 1126 |
| BmtI | GCTAGC | 1 cut(s) | 531 |
| BmuI | ACTGGG | 1 cut(s) | 43 |
| BpiI | GAAGAC | 1 cut(s) | 1136 |
| BpuMI | CCSGG | 2 cut(s) | 100, 203 |
| BsaHI | GRCGYC | 1 cut(s) | 115 |
| BsaJI | CCNNGG | 3 cut(s) | 99, 118, 201 |
| BsaWI | WCCGGW | 1 cut(s) | 550 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 237, 267 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 38, 111, 396, 550, 658, 973 |
| Bse118I | RCCGGY | 2 cut(s) | 187, 228 |
| Bse1I | ACTGG | 4 cut(s) | 14, 26, 49, 518 |
| Bse3DI | GCAATG | 1 cut(s) | 264 |
| BseAI | TCCGGA | 1 cut(s) | 550 |
| BseDI | CCNNGG | 3 cut(s) | 99, 118, 201 |
| BseGI | GGATG | 1 cut(s) | 600 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 38, 111, 396, 550, 658, 973 |
| BseMI | GCAATG | 1 cut(s) | 264 |
| BseMII | CTCAG | 1 cut(s) | 692 |
| BseNI | ACTGG | 4 cut(s) | 14, 26, 49, 518 |
| BseSI | GKGCMC | 1 cut(s) | 1003 |
| BseXI | GCAGC | 4 cut(s) | 80, 135, 430, 890 |
| BsgI | GTGCAG | 1 cut(s) | 96 |
| Bsh1236I | CGCG | 1 cut(s) | 833 |
| BshFI | GGCC | 4 cut(s) | 104, 232, 543, 785 |
| BshNI | GGYRCC | 2 cut(s) | 114, 1064 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1003 |
| BsiHKCI | CYCGRG | 2 cut(s) | 234, 887 |
| BsiSI | CCGG | 5 cut(s) | 99, 188, 203, 229, 551 |
| BslFI | GGGAC | 4 cut(s) | 14, 18, 37, 1072 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 38, 111, 396, 550, 658, 973 |
| BsmAI | GTCTC | 1 cut(s) | 626 |
| BsmFI | GGGAC | 4 cut(s) | 14, 18, 37, 1072 |
| BsnI | GGCC | 4 cut(s) | 104, 232, 543, 785 |
| BsoBI | CYCGRG | 2 cut(s) | 234, 887 |
| Bsp1286I | GDGCHC | 2 cut(s) | 300, 1003 |
| Bsp13I | TCCGGA | 1 cut(s) | 550 |
| Bsp143I | GATC | 6 cut(s) | 22, 250, 696, 708, 1076, 1112 |
| BspACI | CCGC | 6 cut(s) | 147, 191, 261, 503, 525, 892 |
| BspANI | GGCC | 4 cut(s) | 104, 232, 543, 785 |
| BspCNI | CTCAG | 1 cut(s) | 693 |
| BspEI | TCCGGA | 1 cut(s) | 550 |
| BspFNI | CGCG | 1 cut(s) | 833 |
| BspHI | TCATGA | 1 cut(s) | 810 |
| BspMI | ACCTGC | 1 cut(s) | 217 |
| BspOI | GCTAGC | 1 cut(s) | 531 |
| BspPI | GGATC | 5 cut(s) | 17, 691, 703, 704, 1084 |
| BspT107I | GGYRCC | 2 cut(s) | 114, 1064 |
| BspTI | CTTAAG | 2 cut(s) | 451, 683 |
| BsrBI | CCGCTC | 1 cut(s) | 892 |
| BsrDI | GCAATG | 1 cut(s) | 264 |
| BsrFI | RCCGGY | 2 cut(s) | 187, 228 |
| BsrI | ACTGG | 4 cut(s) | 14, 26, 49, 518 |
| BssAI | RCCGGY | 2 cut(s) | 187, 228 |
| BssECI | CCNNGG | 3 cut(s) | 99, 118, 201 |
| BssMI | GATC | 6 cut(s) | 22, 250, 696, 708, 1076, 1112 |
| BssNI | GRCGYC | 1 cut(s) | 115 |
| BssT1I | CCWWGG | 1 cut(s) | 118 |
| Bst4CI | ACNGT | 4 cut(s) | 68, 74, 488, 1010 |
| Bst6I | CTCTTC | 1 cut(s) | 744 |
| BstACI | GRCGYC | 1 cut(s) | 115 |
| BstAFI | CTTAAG | 2 cut(s) | 451, 683 |
| BstC8I | GCNNGC | 5 cut(s) | 261, 314, 318, 529, 677 |
| BstDEI | CTNAG | 3 cut(s) | 701, 719, 1167 |
| BstF5I | GGATG | 1 cut(s) | 600 |
| BstFNI | CGCG | 1 cut(s) | 833 |
| BstH2I | RGCGCY | 2 cut(s) | 14, 118 |
| BstHHI | GCGC | 8 cut(s) | 13, 93, 98, 117, 644, 675, 835, 1097 |
| BstKTI | GATC | 6 cut(s) | 25, 253, 699, 711, 1079, 1115 |
| BstMAI | GTCTC | 1 cut(s) | 626 |
| BstMBI | GATC | 6 cut(s) | 22, 250, 696, 708, 1076, 1112 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 123, 480, 770, 791, 1101 |
| BstSCI | CCNGG | 2 cut(s) | 98, 201 |
| BstSFI | CTRYAG | 1 cut(s) | 283 |
| BstSLI | GKGCMC | 1 cut(s) | 1003 |
| BstUI | CGCG | 1 cut(s) | 833 |
| BstV1I | GCAGC | 4 cut(s) | 80, 135, 430, 890 |
| BstV2I | GAAGAC | 1 cut(s) | 1136 |
| BstX2I | RGATCY | 3 cut(s) | 22, 250, 696 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 465 |
| BstYI | RGATCY | 3 cut(s) | 22, 250, 696 |
| BsuI | GTATCC | 1 cut(s) | 641 |
| BsuRI | GGCC | 4 cut(s) | 104, 232, 543, 785 |
| BtrI | CACGTC | 1 cut(s) | 498 |
| BtsCI | GGATG | 1 cut(s) | 600 |
| BtsIMutI | CAGTG | 2 cut(s) | 431, 1154 |
| BveI | ACCTGC | 1 cut(s) | 217 |
| Cac8I | GCNNGC | 5 cut(s) | 261, 314, 318, 529, 677 |
| CciI | TCATGA | 1 cut(s) | 810 |
| CfoI | GCGC | 8 cut(s) | 13, 93, 98, 117, 644, 675, 835, 1097 |
| Cfr10I | RCCGGY | 2 cut(s) | 187, 228 |
| Cfr13I | GGNCC | 8 cut(s) | 5, 45, 102, 179, 231, 661, 953, 1163 |
| CseI | GACGC | 2 cut(s) | 839, 1146 |
| Csp6I | GTAC | 5 cut(s) | 17, 80, 489, 705, 847 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 139, 174 |
| CviAII | CATG | 4 cut(s) | 476, 811, 823, 1130 |
| CviQI | GTAC | 5 cut(s) | 17, 80, 489, 705, 847 |
| DdeI | CTNAG | 3 cut(s) | 701, 719, 1167 |
| DinI | GGCGCC | 1 cut(s) | 116 |
| DpnI | GATC | 6 cut(s) | 24, 252, 698, 710, 1078, 1114 |
| DpnII | GATC | 6 cut(s) | 22, 250, 696, 708, 1076, 1112 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 951 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 951 |
| EaeI | YGGCCR | 1 cut(s) | 541 |
| Eam1104I | CTCTTC | 1 cut(s) | 744 |
| EarI | CTCTTC | 1 cut(s) | 744 |
| EciI | GGCGGA | 1 cut(s) | 206 |
| Eco130I | CCWWGG | 1 cut(s) | 118 |
| Eco24I | GRGCYC | 1 cut(s) | 300 |
| Eco47I | GGWCC | 6 cut(s) | 5, 45, 179, 661, 953, 1163 |
| Eco57I | CTGAAG | 2 cut(s) | 157, 1130 |
| Eco88I | CYCGRG | 2 cut(s) | 234, 887 |
| EcoO109I | RGGNCCY | 1 cut(s) | 102 |
| EcoT14I | CCWWGG | 1 cut(s) | 118 |
| EcoT38I | GRGCYC | 1 cut(s) | 300 |
| EgeI | GGCGCC | 1 cut(s) | 116 |
| EheI | GGCGCC | 1 cut(s) | 116 |
| ErhI | CCWWGG | 1 cut(s) | 118 |
| FaeI | CATG | 4 cut(s) | 479, 814, 826, 1133 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 602, 634 |
| FaqI | GGGAC | 4 cut(s) | 14, 18, 37, 1072 |
| FatI | CATG | 4 cut(s) | 475, 810, 822, 1129 |
| FauI | CCCGC | 1 cut(s) | 268 |
| Fnu4HI | GCNGC | 6 cut(s) | 94, 124, 419, 525, 893, 904 |
| FokI | GGATG | 1 cut(s) | 607 |
| FriOI | GRGCYC | 1 cut(s) | 300 |
| Fsp4HI | GCNGC | 6 cut(s) | 94, 124, 419, 525, 893, 904 |
| FspBI | CTAG | 6 cut(s) | 423, 528, 564, 629, 1050, 1100 |
| GlaI | GCGC | 8 cut(s) | 12, 92, 97, 116, 643, 674, 834, 1096 |
| GluI | GCNGC | 6 cut(s) | 94, 124, 419, 525, 893, 904 |
| HaeII | RGCGCY | 2 cut(s) | 14, 118 |
| HaeIII | GGCC | 4 cut(s) | 104, 232, 543, 785 |
| HapII | CCGG | 5 cut(s) | 99, 188, 203, 229, 551 |
| HgaI | GACGC | 2 cut(s) | 839, 1146 |
| HhaI | GCGC | 8 cut(s) | 13, 93, 98, 117, 644, 675, 835, 1097 |
| Hin1I | GRCGYC | 1 cut(s) | 115 |
| Hin1II | CATG | 4 cut(s) | 479, 814, 826, 1133 |
| Hin6I | GCGC | 8 cut(s) | 11, 91, 96, 115, 642, 673, 833, 1095 |
| HinP1I | GCGC | 8 cut(s) | 11, 91, 96, 115, 642, 673, 833, 1095 |
| HincII | GTYRAC | 2 cut(s) | 448, 1019 |
| HindII | GTYRAC | 2 cut(s) | 448, 1019 |
| HindIII | AAGCTT | 2 cut(s) | 310, 616 |
| HinfI | GANTC | 1 cut(s) | 161 |
| HpaII | CCGG | 5 cut(s) | 99, 188, 203, 229, 551 |
| HphI | GGTGA | 4 cut(s) | 62, 492, 956, 1098 |
| Hpy166II | GTNNAC | 3 cut(s) | 448, 1001, 1019 |
| Hpy188I | TCNGA | 2 cut(s) | 726, 1081 |
| Hpy188III | TCNNGA | 6 cut(s) | 182, 551, 700, 811, 942, 1161 |
| Hpy8I | GTNNAC | 3 cut(s) | 448, 1001, 1019 |
| HpyAV | CCTTC | 6 cut(s) | 115, 137, 352, 405, 923, 971 |
| HpyCH4III | ACNGT | 4 cut(s) | 68, 74, 488, 1010 |
| HpyCH4IV | ACGT | 3 cut(s) | 497, 946, 1021 |
| HpyCH4V | TGCA | 4 cut(s) | 77, 316, 396, 1001 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 123, 480, 770, 791, 1101 |
| HpyF3I | CTNAG | 3 cut(s) | 701, 719, 1167 |
| HpySE526I | ACGT | 3 cut(s) | 497, 946, 1021 |
| Hsp92I | GRCGYC | 1 cut(s) | 115 |
| Hsp92II | CATG | 4 cut(s) | 479, 814, 826, 1133 |
| HspAI | GCGC | 8 cut(s) | 11, 91, 96, 115, 642, 673, 833, 1095 |
| KasI | GGCGCC | 1 cut(s) | 114 |
| Kpn2I | TCCGGA | 1 cut(s) | 550 |
| Kzo9I | GATC | 6 cut(s) | 22, 250, 696, 708, 1076, 1112 |
| LmnI | GCTCC | 5 cut(s) | 193, 628, 840, 1120, 1154 |
| Lsp1109I | GCAGC | 4 cut(s) | 80, 135, 430, 890 |
| LweI | GCATC | 3 cut(s) | 688, 739, 1126 |
| MaeI | CTAG | 6 cut(s) | 423, 528, 564, 629, 1050, 1100 |
| MaeII | ACGT | 3 cut(s) | 497, 946, 1021 |
| MaeIII | GTNAC | 4 cut(s) | 68, 498, 579, 599 |
| MalI | GATC | 6 cut(s) | 24, 252, 698, 710, 1078, 1114 |
| MbiI | CCGCTC | 1 cut(s) | 892 |
| MboI | GATC | 6 cut(s) | 22, 250, 696, 708, 1076, 1112 |
| MboII | GAAGA | 3 cut(s) | 731, 869, 1136 |
| MflI | RGATCY | 3 cut(s) | 22, 250, 696 |
| MhlI | GDGCHC | 2 cut(s) | 300, 1003 |
| MlsI | TGGCCA | 1 cut(s) | 543 |
| MluCI | AATT | 4 cut(s) | 532, 556, 570, 804 |
| MluNI | TGGCCA | 1 cut(s) | 543 |
| Mly113I | GGCGCC | 1 cut(s) | 115 |
| MmeI | TCCRAC | 1 cut(s) | 23 |
| Mox20I | TGGCCA | 1 cut(s) | 543 |
| MroI | TCCGGA | 1 cut(s) | 550 |
| MscI | TGGCCA | 1 cut(s) | 543 |
| MseI | TTAA | 3 cut(s) | 452, 614, 684 |
| MslI | CAYNNNNRTG | 3 cut(s) | 474, 825, 1134 |
| Msp20I | TGGCCA | 1 cut(s) | 543 |
| MspCI | CTTAAG | 2 cut(s) | 451, 683 |
| MspI | CCGG | 5 cut(s) | 99, 188, 203, 229, 551 |
| MspR9I | CCNGG | 2 cut(s) | 100, 203 |
| MteI | GCGCNGCGC | 1 cut(s) | 94 |
| MvnI | CGCG | 1 cut(s) | 833 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 123, 480, 770, 791, 1101 |
| NarI | GGCGCC | 1 cut(s) | 115 |
| NciI | CCSGG | 2 cut(s) | 100, 203 |
| NdeII | GATC | 6 cut(s) | 22, 250, 696, 708, 1076, 1112 |
| NheI | GCTAGC | 1 cut(s) | 527 |
| NlaIII | CATG | 4 cut(s) | 479, 814, 826, 1133 |
| NmeAIII | GCCGAG | 1 cut(s) | 91 |
| NmuCI | GTSAC | 2 cut(s) | 68, 498 |
| PaeR7I | CTCGAG | 1 cut(s) | 887 |
| PagI | TCATGA | 1 cut(s) | 810 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 503 |
| PfeI | GAWTC | 1 cut(s) | 161 |
| PflFI | GACNNNGTC | 1 cut(s) | 49 |
| PkrI | GCNGC | 6 cut(s) | 95, 125, 420, 526, 894, 905 |
| PluTI | GGCGCC | 1 cut(s) | 118 |
| PspPI | GGNCC | 8 cut(s) | 5, 45, 102, 179, 231, 661, 953, 1163 |
| PspXI | VCTCGAGB | 1 cut(s) | 887 |
| PsuI | RGATCY | 3 cut(s) | 22, 250, 696 |
| PsyI | GACNNNGTC | 1 cut(s) | 49 |
| RsaI | GTAC | 5 cut(s) | 18, 81, 490, 706, 848 |
| RsaNI | GTAC | 5 cut(s) | 17, 80, 489, 705, 847 |
| RseI | CAYNNNNRTG | 3 cut(s) | 474, 825, 1134 |
| SaqAI | TTAA | 3 cut(s) | 452, 614, 684 |
| SatI | GCNGC | 6 cut(s) | 94, 124, 419, 525, 893, 904 |
| Sau3AI | GATC | 6 cut(s) | 22, 250, 696, 708, 1076, 1112 |
| Sau96I | GGNCC | 8 cut(s) | 5, 45, 102, 179, 231, 661, 953, 1163 |
| ScrFI | CCNGG | 2 cut(s) | 100, 203 |
| SduI | GDGCHC | 2 cut(s) | 300, 1003 |
| SfaNI | GCATC | 3 cut(s) | 688, 739, 1126 |
| SfcI | CTRYAG | 1 cut(s) | 283 |
| SfoI | GGCGCC | 1 cut(s) | 116 |
| Sfr274I | CTCGAG | 1 cut(s) | 887 |
| SinI | GGWCC | 6 cut(s) | 5, 45, 179, 661, 953, 1163 |
| SlaI | CTCGAG | 1 cut(s) | 887 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 474, 825, 1134 |
| SmlI | CTYRAG | 3 cut(s) | 451, 683, 887 |
| SmoI | CTYRAG | 3 cut(s) | 451, 683, 887 |
| Sse9I | AATT | 4 cut(s) | 532, 556, 570, 804 |
| SsiI | CCGC | 6 cut(s) | 147, 191, 261, 503, 525, 892 |
| SspDI | GGCGCC | 1 cut(s) | 114 |
| SspMI | CTAG | 6 cut(s) | 423, 528, 564, 629, 1050, 1100 |
| StyD4I | CCNGG | 2 cut(s) | 98, 201 |
| StyI | CCWWGG | 1 cut(s) | 118 |
| TaaI | ACNGT | 4 cut(s) | 68, 74, 488, 1010 |
| TaiI | ACGT | 3 cut(s) | 500, 949, 1024 |
| TaqI | TCGA | 2 cut(s) | 888, 1111 |
| TasI | AATT | 4 cut(s) | 532, 556, 570, 804 |
| TatI | WGTACW | 1 cut(s) | 79 |
| TauI | GCSGC | 2 cut(s) | 527, 895 |
| TfiI | GAWTC | 1 cut(s) | 161 |
| Tru1I | TTAA | 3 cut(s) | 452, 614, 684 |
| Tru9I | TTAA | 3 cut(s) | 452, 614, 684 |
| TscAI | CASTG | 2 cut(s) | 438, 1154 |
| TseFI | GTSAC | 2 cut(s) | 68, 498 |
| TseI | GCWGC | 4 cut(s) | 93, 123, 418, 903 |
| Tsp45I | GTSAC | 2 cut(s) | 68, 498 |
| TspDTI | ATGAA | 3 cut(s) | 804, 839, 870 |
| TspGWI | ACGGA | 1 cut(s) | 653 |
| TspRI | CASTG | 2 cut(s) | 438, 1154 |
| Tth111I | GACNNNGTC | 1 cut(s) | 49 |
| Vha464I | CTTAAG | 2 cut(s) | 451, 683 |
| VneI | GTGCAC | 1 cut(s) | 999 |
| VpaK11BI | GGWCC | 6 cut(s) | 5, 45, 179, 661, 953, 1163 |
| XapI | RAATTY | 2 cut(s) | 556, 570 |
| XhoI | CTCGAG | 1 cut(s) | 887 |
| XspI | CTAG | 6 cut(s) | 423, 528, 564, 629, 1050, 1100 |