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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 593 |
| AccB1I | GGYRCC | 1 cut(s) | 706 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 813 |
| AccIII | TCCGGA | 1 cut(s) | 520 |
| AciI | CCGC | 3 cut(s) | 334, 627, 852 |
| AclWI | GGATC | 2 cut(s) | 422, 492 |
| AcoI | YGGCCR | 1 cut(s) | 727 |
| AcsI | RAATTY | 1 cut(s) | 401 |
| AcyI | GRCGYC | 1 cut(s) | 707 |
| AdeI | CACNNNGTG | 1 cut(s) | 892 |
| AfaI | GTAC | 1 cut(s) | 221 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 551, 813 |
| AgsI | TTSAA | 4 cut(s) | 139, 349, 481, 748 |
| AjiI | CACGTC | 1 cut(s) | 109 |
| AjnI | CCWGG | 2 cut(s) | 78, 102 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 261, 293 |
| AluBI | AGCT | 8 cut(s) | 27, 34, 128, 433, 443, 514, 833, 884 |
| AluI | AGCT | 8 cut(s) | 27, 34, 128, 433, 443, 514, 833, 884 |
| Alw21I | GWGCWC | 1 cut(s) | 835 |
| Alw26I | GTCTC | 1 cut(s) | 265 |
| AlwI | GGATC | 2 cut(s) | 422, 492 |
| Aor13HI | TCCGGA | 1 cut(s) | 520 |
| AoxI | GGCC | 1 cut(s) | 727 |
| ApeKI | GCWGC | 1 cut(s) | 152 |
| ApoI | RAATTY | 1 cut(s) | 401 |
| AspLEI | GCGC | 2 cut(s) | 709, 754 |
| AspS9I | GGNCC | 1 cut(s) | 595 |
| AsuHPI | GGTGA | 1 cut(s) | 841 |
| AvaII | GGWCC | 1 cut(s) | 595 |
| BaeGI | GKGCMC | 1 cut(s) | 820 |
| BanI | GGYRCC | 1 cut(s) | 706 |
| BanII | GRGCYC | 2 cut(s) | 558, 835 |
| BauI | CACGAG | 1 cut(s) | 834 |
| BbsI | GAAGAC | 1 cut(s) | 246 |
| Bbv12I | GWGCWC | 1 cut(s) | 835 |
| BbvI | GCAGC | 1 cut(s) | 164 |
| BccI | CCATC | 4 cut(s) | 65, 188, 315, 738 |
| BciT130I | CCWGG | 2 cut(s) | 80, 104 |
| BciVI | GTATCC | 3 cut(s) | 76, 570, 814 |
| BcoDI | GTCTC | 1 cut(s) | 265 |
| BfaI | CTAG | 3 cut(s) | 99, 311, 920 |
| BfoI | RGCGCY | 2 cut(s) | 710, 755 |
| BfuI | GTATCC | 3 cut(s) | 76, 570, 814 |
| BisI | GCNGC | 1 cut(s) | 153 |
| BlsI | GCNGC | 1 cut(s) | 154 |
| Bme1390I | CCNGG | 2 cut(s) | 80, 104 |
| Bme18I | GGWCC | 1 cut(s) | 595 |
| BmgBI | CACGTC | 1 cut(s) | 109 |
| BmgT120I | GGNCC | 1 cut(s) | 595 |
| BmiI | GGNNCC | 3 cut(s) | 557, 649, 708 |
| BmrFI | CCNGG | 2 cut(s) | 80, 104 |
| BmsI | GCATC | 1 cut(s) | 772 |
| BpiI | GAAGAC | 1 cut(s) | 246 |
| BpmI | CTGGAG | 1 cut(s) | 200 |
| BpuEI | CTTGAG | 3 cut(s) | 47, 77, 114 |
| BsaHI | GRCGYC | 1 cut(s) | 707 |
| BsaI | GGTCTC | 1 cut(s) | 265 |
| BsaWI | WCCGGW | 2 cut(s) | 520, 592 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 551, 813 |
| Bse1I | ACTGG | 3 cut(s) | 217, 223, 807 |
| BseAI | TCCGGA | 1 cut(s) | 520 |
| BseBI | CCWGG | 2 cut(s) | 80, 104 |
| BseGI | GGATG | 3 cut(s) | 183, 211, 471 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 551, 813 |
| BseNI | ACTGG | 3 cut(s) | 217, 223, 807 |
| BseSI | GKGCMC | 1 cut(s) | 820 |
| BseXI | GCAGC | 1 cut(s) | 164 |
| BshFI | GGCC | 1 cut(s) | 729 |
| BshNI | GGYRCC | 1 cut(s) | 706 |
| BsiHKAI | GWGCWC | 1 cut(s) | 835 |
| BsiSI | CCGG | 2 cut(s) | 521, 593 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 551, 813 |
| BsmAI | GTCTC | 1 cut(s) | 265 |
| BsnI | GGCC | 1 cut(s) | 729 |
| Bso31I | GGTCTC | 1 cut(s) | 265 |
| Bsp1286I | GDGCHC | 3 cut(s) | 558, 820, 835 |
| Bsp13I | TCCGGA | 1 cut(s) | 520 |
| Bsp143I | GATC | 4 cut(s) | 414, 497, 904, 916 |
| BspACI | CCGC | 3 cut(s) | 334, 627, 852 |
| BspANI | GGCC | 1 cut(s) | 729 |
| BspEI | TCCGGA | 1 cut(s) | 520 |
| BspHI | TCATGA | 1 cut(s) | 427 |
| BspLI | GGNNCC | 3 cut(s) | 557, 649, 708 |
| BspPI | GGATC | 2 cut(s) | 422, 492 |
| BspT107I | GGYRCC | 1 cut(s) | 706 |
| BspTNI | GGTCTC | 1 cut(s) | 265 |
| BsrI | ACTGG | 3 cut(s) | 217, 223, 807 |
| BssMI | GATC | 4 cut(s) | 414, 497, 904, 916 |
| BssNI | GRCGYC | 1 cut(s) | 707 |
| BssSI | CACGAG | 1 cut(s) | 834 |
| Bst2BI | CACGAG | 1 cut(s) | 834 |
| Bst2UI | CCWGG | 2 cut(s) | 80, 104 |
| Bst4CI | ACNGT | 1 cut(s) | 118 |
| Bst6I | CTCTTC | 1 cut(s) | 648 |
| BstACI | GRCGYC | 1 cut(s) | 707 |
| BstC8I | GCNNGC | 1 cut(s) | 126 |
| BstDEI | CTNAG | 4 cut(s) | 53, 546, 571, 719 |
| BstEII | GGTNACC | 1 cut(s) | 622 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 549 |
| BstF5I | GGATG | 3 cut(s) | 183, 211, 471 |
| BstH2I | RGCGCY | 2 cut(s) | 710, 755 |
| BstHHI | GCGC | 2 cut(s) | 709, 754 |
| BstKTI | GATC | 4 cut(s) | 417, 500, 907, 919 |
| BstMAI | GTCTC | 1 cut(s) | 265 |
| BstMBI | GATC | 4 cut(s) | 414, 497, 904, 916 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 149, 749, 860, 881 |
| BstNI | CCWGG | 2 cut(s) | 80, 104 |
| BstNSI | RCATGY | 1 cut(s) | 789 |
| BstPI | GGTNACC | 1 cut(s) | 622 |
| BstSCI | CCNGG | 2 cut(s) | 78, 102 |
| BstSLI | GKGCMC | 1 cut(s) | 820 |
| BstV1I | GCAGC | 1 cut(s) | 164 |
| BstV2I | GAAGAC | 1 cut(s) | 246 |
| BstX2I | RGATCY | 1 cut(s) | 497 |
| BstYI | RGATCY | 1 cut(s) | 497 |
| BsuI | GTATCC | 3 cut(s) | 76, 570, 814 |
| BsuRI | GGCC | 1 cut(s) | 729 |
| BtrI | CACGTC | 1 cut(s) | 109 |
| BtsCI | GGATG | 3 cut(s) | 183, 211, 471 |
| BtsIMutI | CAGTG | 1 cut(s) | 230 |
| Cac8I | GCNNGC | 1 cut(s) | 126 |
| CciI | TCATGA | 1 cut(s) | 427 |
| CfoI | GCGC | 2 cut(s) | 709, 754 |
| Cfr13I | GGNCC | 1 cut(s) | 595 |
| CseI | GACGC | 1 cut(s) | 749 |
| Csp6I | GTAC | 1 cut(s) | 220 |
| CviAII | CATG | 2 cut(s) | 428, 786 |
| CviQI | GTAC | 1 cut(s) | 220 |
| DdeI | CTNAG | 4 cut(s) | 53, 546, 571, 719 |
| DinI | GGCGCC | 1 cut(s) | 708 |
| DpnI | GATC | 4 cut(s) | 416, 499, 906, 918 |
| DpnII | GATC | 4 cut(s) | 414, 497, 904, 916 |
| DraIII | CACNNNGTG | 1 cut(s) | 892 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 593 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 593 |
| EaeI | YGGCCR | 1 cut(s) | 727 |
| Eam1104I | CTCTTC | 1 cut(s) | 648 |
| EarI | CTCTTC | 1 cut(s) | 648 |
| Ecl136II | GAGCTC | 1 cut(s) | 833 |
| Eco24I | GRGCYC | 2 cut(s) | 558, 835 |
| Eco31I | GGTCTC | 1 cut(s) | 265 |
| Eco47I | GGWCC | 1 cut(s) | 595 |
| Eco53kI | GAGCTC | 1 cut(s) | 833 |
| Eco91I | GGTNACC | 1 cut(s) | 622 |
| EcoICRI | GAGCTC | 1 cut(s) | 833 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 549 |
| EcoO65I | GGTNACC | 1 cut(s) | 622 |
| EcoRII | CCWGG | 2 cut(s) | 78, 102 |
| EcoT22I | ATGCAT | 1 cut(s) | 787 |
| EcoT38I | GRGCYC | 2 cut(s) | 558, 835 |
| EgeI | GGCGCC | 1 cut(s) | 708 |
| EheI | GGCGCC | 1 cut(s) | 708 |
| FaeI | CATG | 2 cut(s) | 431, 789 |
| FatI | CATG | 2 cut(s) | 427, 785 |
| FauNDI | CATATG | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 1 cut(s) | 153 |
| FokI | GGATG | 3 cut(s) | 170, 218, 458 |
| FriOI | GRGCYC | 2 cut(s) | 558, 835 |
| Fsp4HI | GCNGC | 1 cut(s) | 153 |
| FspBI | CTAG | 3 cut(s) | 99, 311, 920 |
| GlaI | GCGC | 2 cut(s) | 708, 753 |
| GluI | GCNGC | 1 cut(s) | 153 |
| GsuI | CTGGAG | 1 cut(s) | 200 |
| HaeII | RGCGCY | 2 cut(s) | 710, 755 |
| HaeIII | GGCC | 1 cut(s) | 729 |
| HapII | CCGG | 2 cut(s) | 521, 593 |
| HgaI | GACGC | 1 cut(s) | 749 |
| HhaI | GCGC | 2 cut(s) | 709, 754 |
| Hin1I | GRCGYC | 1 cut(s) | 707 |
| Hin1II | CATG | 2 cut(s) | 431, 789 |
| Hin6I | GCGC | 2 cut(s) | 707, 752 |
| HinP1I | GCGC | 2 cut(s) | 707, 752 |
| HincII | GTYRAC | 1 cut(s) | 661 |
| HindII | GTYRAC | 1 cut(s) | 661 |
| HindIII | AAGCTT | 2 cut(s) | 25, 512 |
| HinfI | GANTC | 8 cut(s) | 41, 75, 209, 293, 524, 567, 723, 767 |
| HpaII | CCGG | 2 cut(s) | 521, 593 |
| HphI | GGTGA | 1 cut(s) | 841 |
| Hpy166II | GTNNAC | 1 cut(s) | 661 |
| Hpy188I | TCNGA | 2 cut(s) | 373, 772 |
| Hpy8I | GTNNAC | 1 cut(s) | 661 |
| HpyAV | CCTTC | 3 cut(s) | 243, 266, 613 |
| HpyCH4III | ACNGT | 1 cut(s) | 118 |
| HpyCH4IV | ACGT | 4 cut(s) | 108, 285, 588, 663 |
| HpyCH4V | TGCA | 2 cut(s) | 384, 785 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 149, 749, 860, 881 |
| HpyF3I | CTNAG | 4 cut(s) | 53, 546, 571, 719 |
| HpySE526I | ACGT | 4 cut(s) | 108, 285, 588, 663 |
| Hsp92I | GRCGYC | 1 cut(s) | 707 |
| Hsp92II | CATG | 2 cut(s) | 431, 789 |
| HspAI | GCGC | 2 cut(s) | 707, 752 |
| KasI | GGCGCC | 1 cut(s) | 706 |
| Kpn2I | TCCGGA | 1 cut(s) | 520 |
| Kzo9I | GATC | 4 cut(s) | 414, 497, 904, 916 |
| LmnI | GCTCC | 4 cut(s) | 31, 219, 440, 561 |
| Lsp1109I | GCAGC | 1 cut(s) | 164 |
| LweI | GCATC | 1 cut(s) | 772 |
| MaeI | CTAG | 3 cut(s) | 99, 311, 920 |
| MaeII | ACGT | 4 cut(s) | 108, 285, 588, 663 |
| MaeIII | GTNAC | 4 cut(s) | 290, 536, 622, 847 |
| MalI | GATC | 4 cut(s) | 416, 499, 906, 918 |
| MboI | GATC | 4 cut(s) | 414, 497, 904, 916 |
| MboII | GAAGA | 7 cut(s) | 248, 251, 281, 493, 665, 851, 914 |
| MflI | RGATCY | 1 cut(s) | 497 |
| MhlI | GDGCHC | 3 cut(s) | 558, 820, 835 |
| MluCI | AATT | 4 cut(s) | 401, 490, 529, 843 |
| Mly113I | GGCGCC | 1 cut(s) | 707 |
| MlyI | GAGTC | 4 cut(s) | 50, 287, 732, 776 |
| MnlI | CCTC | 8 cut(s) | 55, 341, 545, 649, 669, 673, 699, 765 |
| Mph1103I | ATGCAT | 1 cut(s) | 787 |
| MroI | TCCGGA | 1 cut(s) | 520 |
| MseI | TTAA | 3 cut(s) | 158, 387, 395 |
| MslI | CAYNNNNRTG | 2 cut(s) | 204, 735 |
| MspI | CCGG | 2 cut(s) | 521, 593 |
| MspR9I | CCNGG | 2 cut(s) | 80, 104 |
| MvaI | CCWGG | 2 cut(s) | 80, 104 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 149, 749, 860, 881 |
| NarI | GGCGCC | 1 cut(s) | 707 |
| NdeI | CATATG | 1 cut(s) | 201 |
| NdeII | GATC | 4 cut(s) | 414, 497, 904, 916 |
| NlaIII | CATG | 2 cut(s) | 431, 789 |
| NlaIV | GGNNCC | 3 cut(s) | 557, 649, 708 |
| NmuCI | GTSAC | 3 cut(s) | 290, 536, 847 |
| NsiI | ATGCAT | 1 cut(s) | 787 |
| NspI | RCATGY | 1 cut(s) | 789 |
| PagI | TCATGA | 1 cut(s) | 427 |
| PfeI | GAWTC | 4 cut(s) | 75, 209, 524, 567 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 813 |
| PfoI | TCCNGGA | 1 cut(s) | 78 |
| PkrI | GCNGC | 1 cut(s) | 154 |
| PleI | GAGTC | 4 cut(s) | 49, 287, 731, 775 |
| PluTI | GGCGCC | 1 cut(s) | 710 |
| PpsI | GAGTC | 4 cut(s) | 49, 287, 731, 775 |
| Psp124BI | GAGCTC | 1 cut(s) | 835 |
| Psp6I | CCWGG | 2 cut(s) | 78, 102 |
| PspEI | GGTNACC | 1 cut(s) | 622 |
| PspGI | CCWGG | 2 cut(s) | 78, 102 |
| PspN4I | GGNNCC | 3 cut(s) | 557, 649, 708 |
| PspPI | GGNCC | 1 cut(s) | 595 |
| PsuI | RGATCY | 1 cut(s) | 497 |
| RsaI | GTAC | 1 cut(s) | 221 |
| RsaNI | GTAC | 1 cut(s) | 220 |
| RseI | CAYNNNNRTG | 2 cut(s) | 204, 735 |
| SacI | GAGCTC | 1 cut(s) | 835 |
| SaqAI | TTAA | 3 cut(s) | 158, 387, 395 |
| SatI | GCNGC | 1 cut(s) | 153 |
| Sau3AI | GATC | 4 cut(s) | 414, 497, 904, 916 |
| Sau96I | GGNCC | 1 cut(s) | 595 |
| SchI | GAGTC | 4 cut(s) | 50, 287, 732, 776 |
| ScrFI | CCNGG | 2 cut(s) | 80, 104 |
| SduI | GDGCHC | 3 cut(s) | 558, 820, 835 |
| SfaNI | GCATC | 1 cut(s) | 772 |
| SfoI | GGCGCC | 1 cut(s) | 708 |
| SinI | GGWCC | 1 cut(s) | 595 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 204, 735 |
| SmlI | CTYRAG | 3 cut(s) | 62, 92, 129 |
| SmoI | CTYRAG | 3 cut(s) | 62, 92, 129 |
| Sse9I | AATT | 4 cut(s) | 401, 490, 529, 843 |
| SsiI | CCGC | 3 cut(s) | 334, 627, 852 |
| SspDI | GGCGCC | 1 cut(s) | 706 |
| SspMI | CTAG | 3 cut(s) | 99, 311, 920 |
| SstI | GAGCTC | 1 cut(s) | 835 |
| StyD4I | CCNGG | 2 cut(s) | 78, 102 |
| TaaI | ACNGT | 1 cut(s) | 118 |
| TaiI | ACGT | 4 cut(s) | 111, 288, 591, 666 |
| TaqI | TCGA | 3 cut(s) | 267, 494, 793 |
| TaqII | GACCGA | 1 cut(s) | 83 |
| TasI | AATT | 4 cut(s) | 401, 490, 529, 843 |
| TfiI | GAWTC | 4 cut(s) | 75, 209, 524, 567 |
| Tru1I | TTAA | 3 cut(s) | 158, 387, 395 |
| Tru9I | TTAA | 3 cut(s) | 158, 387, 395 |
| TscAI | CASTG | 1 cut(s) | 230 |
| TseFI | GTSAC | 3 cut(s) | 290, 536, 847 |
| TseI | GCWGC | 1 cut(s) | 152 |
| Tsp45I | GTSAC | 3 cut(s) | 290, 536, 847 |
| TspDTI | ATGAA | 5 cut(s) | 245, 249, 413, 416, 461 |
| TspGWI | ACGGA | 4 cut(s) | 278, 427, 490, 660 |
| TspRI | CASTG | 1 cut(s) | 230 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 813 |
| VpaK11BI | GGWCC | 1 cut(s) | 595 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 549 |
| XapI | RAATTY | 1 cut(s) | 401 |
| XbaI | TCTAGA | 1 cut(s) | 919 |
| XceI | RCATGY | 1 cut(s) | 789 |
| XspI | CTAG | 3 cut(s) | 99, 311, 920 |
| Zsp2I | ATGCAT | 1 cut(s) | 787 |