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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 194 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 393 |
| AccII | CGCG | 1 cut(s) | 238 |
| AciI | CCGC | 3 cut(s) | 294, 485, 664 |
| AclWI | GGATC | 1 cut(s) | 821 |
| AcoI | YGGCCR | 2 cut(s) | 207, 314 |
| AcsI | RAATTY | 1 cut(s) | 986 |
| AcuI | CTGAAG | 1 cut(s) | 37 |
| AdeI | CACNNNGTG | 1 cut(s) | 363 |
| AfaI | GTAC | 1 cut(s) | 806 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 115, 393, 534, 540 |
| AgsI | TTSAA | 2 cut(s) | 128, 934 |
| AjnI | CCWGG | 5 cut(s) | 316, 527, 533, 690, 714 |
| AleI | CACNNNNGTG | 1 cut(s) | 924 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 8, 40 |
| AluBI | AGCT | 3 cut(s) | 21, 516, 740 |
| AluI | AGCT | 3 cut(s) | 21, 516, 740 |
| Alw26I | GTCTC | 3 cut(s) | 482, 850, 1053 |
| AlwI | GGATC | 1 cut(s) | 821 |
| Ama87I | CYCGRG | 2 cut(s) | 517, 704 |
| AoxI | GGCC | 9 cut(s) | 117, 207, 299, 314, 396, 429, 461, 531, 576 |
| ApeKI | GCWGC | 1 cut(s) | 482 |
| ApoI | RAATTY | 1 cut(s) | 986 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 536, 568 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 963 |
| AspA2I | CCTAGG | 1 cut(s) | 109 |
| AspLEI | GCGC | 2 cut(s) | 44, 262 |
| AspS9I | GGNCC | 7 cut(s) | 118, 299, 396, 429, 461, 531, 576 |
| AsuHPI | GGTGA | 3 cut(s) | 408, 429, 668 |
| AsuNHI | GCTAGC | 1 cut(s) | 512 |
| AvaI | CYCGRG | 2 cut(s) | 517, 704 |
| AvrII | CCTAGG | 1 cut(s) | 109 |
| BalI | TGGCCA | 2 cut(s) | 209, 316 |
| BbsI | GAAGAC | 2 cut(s) | 402, 1034 |
| BbvCI | CCTCAGC | 1 cut(s) | 276 |
| BbvI | GCAGC | 1 cut(s) | 494 |
| BccI | CCATC | 5 cut(s) | 75, 209, 677, 773, 900 |
| BceAI | ACGGC | 1 cut(s) | 563 |
| BciT130I | CCWGG | 5 cut(s) | 318, 529, 535, 692, 716 |
| BciVI | GTATCC | 1 cut(s) | 688 |
| BcoDI | GTCTC | 3 cut(s) | 482, 850, 1053 |
| BfaI | CTAG | 7 cut(s) | 39, 110, 242, 368, 513, 711, 896 |
| BfmI | CTRYAG | 1 cut(s) | 352 |
| BfoI | RGCGCY | 2 cut(s) | 45, 263 |
| BfuI | GTATCC | 1 cut(s) | 688 |
| BisI | GCNGC | 1 cut(s) | 483 |
| BlnI | CCTAGG | 1 cut(s) | 109 |
| BlsI | GCNGC | 1 cut(s) | 484 |
| Bme1390I | CCNGG | 5 cut(s) | 318, 529, 535, 692, 716 |
| BmeT110I | CYCGRG | 2 cut(s) | 517, 704 |
| BmgT120I | GGNCC | 7 cut(s) | 118, 299, 396, 429, 461, 531, 576 |
| BmiI | GGNNCC | 1 cut(s) | 120 |
| BmrFI | CCNGG | 5 cut(s) | 318, 529, 535, 692, 716 |
| BmsI | GCATC | 2 cut(s) | 353, 1000 |
| BmtI | GCTAGC | 1 cut(s) | 516 |
| BpiI | GAAGAC | 2 cut(s) | 402, 1034 |
| BpmI | CTGGAG | 1 cut(s) | 785 |
| Bpu10I | CCTNAGC | 1 cut(s) | 276 |
| BpuEI | CTTGAG | 1 cut(s) | 659 |
| BsaI | GGTCTC | 1 cut(s) | 850 |
| BsaJI | CCNNGG | 4 cut(s) | 109, 286, 528, 534 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 8, 38 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 115, 393, 534, 540 |
| Bse118I | RCCGGY | 1 cut(s) | 398 |
| Bse1I | ACTGG | 4 cut(s) | 464, 634, 667, 802 |
| BseBI | CCWGG | 5 cut(s) | 318, 529, 535, 692, 716 |
| BseDI | CCNNGG | 4 cut(s) | 109, 286, 528, 534 |
| BseGI | GGATG | 5 cut(s) | 86, 502, 591, 768, 796 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 115, 393, 534, 540 |
| BseMII | CTCAG | 2 cut(s) | 267, 506 |
| BseNI | ACTGG | 4 cut(s) | 464, 634, 667, 802 |
| BseXI | GCAGC | 1 cut(s) | 494 |
| BsgI | GTGCAG | 1 cut(s) | 178 |
| Bsh1236I | CGCG | 1 cut(s) | 238 |
| BshFI | GGCC | 9 cut(s) | 119, 209, 301, 316, 398, 431, 463, 533, 578 |
| BsiHKCI | CYCGRG | 2 cut(s) | 517, 704 |
| BsiSI | CCGG | 1 cut(s) | 399 |
| BslFI | GGGAC | 1 cut(s) | 557 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 115, 393, 534, 540 |
| BsmAI | GTCTC | 3 cut(s) | 482, 850, 1053 |
| BsmBI | CGTCTC | 1 cut(s) | 1053 |
| BsmFI | GGGAC | 1 cut(s) | 557 |
| BsnI | GGCC | 9 cut(s) | 119, 209, 301, 316, 398, 431, 463, 533, 578 |
| Bso31I | GGTCTC | 1 cut(s) | 850 |
| BsoBI | CYCGRG | 2 cut(s) | 517, 704 |
| Bsp143I | GATC | 3 cut(s) | 370, 826, 1002 |
| BspACI | CCGC | 3 cut(s) | 294, 485, 664 |
| BspANI | GGCC | 9 cut(s) | 119, 209, 301, 316, 398, 431, 463, 533, 578 |
| BspCNI | CTCAG | 2 cut(s) | 268, 505 |
| BspFNI | CGCG | 1 cut(s) | 238 |
| BspLI | GGNNCC | 1 cut(s) | 120 |
| BspOI | GCTAGC | 1 cut(s) | 516 |
| BspPI | GGATC | 1 cut(s) | 821 |
| BspTNI | GGTCTC | 1 cut(s) | 850 |
| BsrFI | RCCGGY | 1 cut(s) | 398 |
| BsrI | ACTGG | 4 cut(s) | 464, 634, 667, 802 |
| BssAI | RCCGGY | 1 cut(s) | 398 |
| BssECI | CCNNGG | 4 cut(s) | 109, 286, 528, 534 |
| BssMI | GATC | 3 cut(s) | 370, 826, 1002 |
| BssT1I | CCWWGG | 2 cut(s) | 109, 286 |
| Bst2UI | CCWGG | 5 cut(s) | 318, 529, 535, 692, 716 |
| Bst4CI | ACNGT | 2 cut(s) | 234, 730 |
| BstC8I | GCNNGC | 3 cut(s) | 273, 514, 738 |
| BstDEI | CTNAG | 3 cut(s) | 276, 492, 566 |
| BstEII | GGTNACC | 1 cut(s) | 381 |
| BstF5I | GGATG | 5 cut(s) | 86, 502, 591, 768, 796 |
| BstFNI | CGCG | 1 cut(s) | 238 |
| BstH2I | RGCGCY | 2 cut(s) | 45, 263 |
| BstHHI | GCGC | 2 cut(s) | 44, 262 |
| BstKTI | GATC | 3 cut(s) | 373, 829, 1005 |
| BstMAI | GTCTC | 3 cut(s) | 482, 850, 1053 |
| BstMBI | GATC | 3 cut(s) | 370, 826, 1002 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 48, 206, 268, 746, 755 |
| BstNI | CCWGG | 5 cut(s) | 318, 529, 535, 692, 716 |
| BstPI | GGTNACC | 1 cut(s) | 381 |
| BstSCI | CCNGG | 5 cut(s) | 316, 527, 533, 690, 714 |
| BstSFI | CTRYAG | 1 cut(s) | 352 |
| BstUI | CGCG | 1 cut(s) | 238 |
| BstV1I | GCAGC | 1 cut(s) | 494 |
| BstV2I | GAAGAC | 2 cut(s) | 402, 1034 |
| BstX2I | RGATCY | 1 cut(s) | 826 |
| BstYI | RGATCY | 1 cut(s) | 826 |
| BsuI | GTATCC | 1 cut(s) | 688 |
| BsuRI | GGCC | 9 cut(s) | 119, 209, 301, 316, 398, 431, 463, 533, 578 |
| BtgZI | GCGATG | 1 cut(s) | 1028 |
| BtsCI | GGATG | 5 cut(s) | 86, 502, 591, 768, 796 |
| BtsI | GCAGTG | 1 cut(s) | 881 |
| BtsIMutI | CAGTG | 2 cut(s) | 230, 881 |
| Cac8I | GCNNGC | 3 cut(s) | 273, 514, 738 |
| CfoI | GCGC | 2 cut(s) | 44, 262 |
| Cfr10I | RCCGGY | 1 cut(s) | 398 |
| Cfr13I | GGNCC | 7 cut(s) | 118, 299, 396, 429, 461, 531, 576 |
| CseI | GACGC | 1 cut(s) | 227 |
| Csp6I | GTAC | 1 cut(s) | 805 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 856, 891 |
| CviAII | CATG | 1 cut(s) | 227 |
| CviQI | GTAC | 1 cut(s) | 805 |
| DdeI | CTNAG | 3 cut(s) | 276, 492, 566 |
| DpnI | GATC | 3 cut(s) | 372, 828, 1004 |
| DpnII | GATC | 3 cut(s) | 370, 826, 1002 |
| DraIII | CACNNNGTG | 1 cut(s) | 363 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 194 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 194 |
| EaeI | YGGCCR | 2 cut(s) | 207, 314 |
| EciI | GGCGGA | 1 cut(s) | 653 |
| Eco130I | CCWWGG | 2 cut(s) | 109, 286 |
| Eco31I | GGTCTC | 1 cut(s) | 850 |
| Eco32I | GATATC | 1 cut(s) | 641 |
| Eco57I | CTGAAG | 1 cut(s) | 37 |
| Eco88I | CYCGRG | 2 cut(s) | 517, 704 |
| Eco91I | GGTNACC | 1 cut(s) | 381 |
| EcoO65I | GGTNACC | 1 cut(s) | 381 |
| EcoRI | GAATTC | 1 cut(s) | 986 |
| EcoRII | CCWGG | 5 cut(s) | 316, 527, 533, 690, 714 |
| EcoRV | GATATC | 1 cut(s) | 641 |
| EcoT14I | CCWWGG | 2 cut(s) | 109, 286 |
| ErhI | CCWWGG | 2 cut(s) | 109, 286 |
| Esp3I | CGTCTC | 1 cut(s) | 1053 |
| FaeI | CATG | 1 cut(s) | 230 |
| FaiI | YATR | 9 cut(s) | 96, 228, 305, 434, 786, 788, 815, 912, 1007 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 37 |
| FaqI | GGGAC | 1 cut(s) | 557 |
| FatI | CATG | 1 cut(s) | 226 |
| FauNDI | CATATG | 1 cut(s) | 786 |
| Fnu4HI | GCNGC | 1 cut(s) | 483 |
| FokI | GGATG | 5 cut(s) | 93, 489, 598, 755, 803 |
| Fsp4HI | GCNGC | 1 cut(s) | 483 |
| FspBI | CTAG | 7 cut(s) | 39, 110, 242, 368, 513, 711, 896 |
| GlaI | GCGC | 2 cut(s) | 43, 261 |
| GluI | GCNGC | 1 cut(s) | 483 |
| GsuI | CTGGAG | 1 cut(s) | 785 |
| HaeII | RGCGCY | 2 cut(s) | 45, 263 |
| HaeIII | GGCC | 9 cut(s) | 119, 209, 301, 316, 398, 431, 463, 533, 578 |
| HapII | CCGG | 1 cut(s) | 399 |
| HgaI | GACGC | 1 cut(s) | 227 |
| HhaI | GCGC | 2 cut(s) | 44, 262 |
| Hin1II | CATG | 1 cut(s) | 230 |
| Hin6I | GCGC | 2 cut(s) | 42, 260 |
| HinP1I | GCGC | 2 cut(s) | 42, 260 |
| HindIII | AAGCTT | 1 cut(s) | 738 |
| HinfI | GANTC | 7 cut(s) | 195, 490, 687, 700, 778, 794, 1030 |
| HpaII | CCGG | 1 cut(s) | 399 |
| HphI | GGTGA | 3 cut(s) | 408, 429, 668 |
| Hpy166II | GTNNAC | 1 cut(s) | 881 |
| Hpy188I | TCNGA | 3 cut(s) | 33, 456, 958 |
| Hpy188III | TCNNGA | 5 cut(s) | 368, 636, 704, 890, 944 |
| Hpy8I | GTNNAC | 1 cut(s) | 881 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 3 cut(s) | 7, 250, 1051 |
| HpyCH4III | ACNGT | 2 cut(s) | 234, 730 |
| HpyCH4IV | ACGT | 2 cut(s) | 189, 870 |
| HpyCH4V | TGCA | 4 cut(s) | 159, 230, 405, 471 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 48, 206, 268, 746, 755 |
| HpyF3I | CTNAG | 3 cut(s) | 276, 492, 566 |
| HpySE526I | ACGT | 2 cut(s) | 189, 870 |
| Hsp92II | CATG | 1 cut(s) | 230 |
| HspAI | GCGC | 2 cut(s) | 42, 260 |
| Kzo9I | GATC | 3 cut(s) | 370, 826, 1002 |
| LmnI | GCTCC | 2 cut(s) | 619, 804 |
| Lsp1109I | GCAGC | 1 cut(s) | 494 |
| LweI | GCATC | 2 cut(s) | 353, 1000 |
| MaeI | CTAG | 7 cut(s) | 39, 110, 242, 368, 513, 711, 896 |
| MaeII | ACGT | 2 cut(s) | 189, 870 |
| MaeIII | GTNAC | 2 cut(s) | 381, 590 |
| MalI | GATC | 3 cut(s) | 372, 828, 1004 |
| MboI | GATC | 3 cut(s) | 370, 826, 1002 |
| MboII | GAAGA | 5 cut(s) | 402, 405, 833, 836, 1039 |
| MflI | RGATCY | 1 cut(s) | 826 |
| MlsI | TGGCCA | 2 cut(s) | 209, 316 |
| MluCI | AATT | 2 cut(s) | 602, 986 |
| MluNI | TGGCCA | 2 cut(s) | 209, 316 |
| MlyI | GAGTC | 4 cut(s) | 204, 484, 772, 1024 |
| MmeI | TCCRAC | 2 cut(s) | 172, 302 |
| MnlI | CCTC | 9 cut(s) | 61, 261, 271, 284, 450, 472, 605, 739, 926 |
| Mox20I | TGGCCA | 2 cut(s) | 209, 316 |
| MroXI | GAANNNNTTC | 1 cut(s) | 963 |
| MscI | TGGCCA | 2 cut(s) | 209, 316 |
| MseI | TTAA | 3 cut(s) | 171, 972, 980 |
| MslI | CAYNNNNRTG | 3 cut(s) | 773, 789, 924 |
| Msp20I | TGGCCA | 2 cut(s) | 209, 316 |
| MspA1I | CMGCKG | 1 cut(s) | 485 |
| MspI | CCGG | 1 cut(s) | 399 |
| MspR9I | CCNGG | 5 cut(s) | 318, 529, 535, 692, 716 |
| MvaI | CCWGG | 5 cut(s) | 318, 529, 535, 692, 716 |
| MvnI | CGCG | 1 cut(s) | 238 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 48, 206, 268, 746, 755 |
| NdeI | CATATG | 1 cut(s) | 786 |
| NdeII | GATC | 3 cut(s) | 370, 826, 1002 |
| NheI | GCTAGC | 1 cut(s) | 512 |
| NlaIII | CATG | 1 cut(s) | 230 |
| NlaIV | GGNNCC | 1 cut(s) | 120 |
| NmeAIII | GCCGAG | 1 cut(s) | 34 |
| OliI | CACNNNNGTG | 1 cut(s) | 924 |
| PaeR7I | CTCGAG | 1 cut(s) | 704 |
| PdmI | GAANNNNTTC | 1 cut(s) | 963 |
| PfeI | GAWTC | 3 cut(s) | 687, 700, 794 |
| PflFI | GACNNNGTC | 1 cut(s) | 869 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 393 |
| PfoI | TCCNGGA | 1 cut(s) | 690 |
| PkrI | GCNGC | 1 cut(s) | 484 |
| PleI | GAGTC | 4 cut(s) | 203, 484, 772, 1024 |
| PpsI | GAGTC | 4 cut(s) | 203, 484, 772, 1024 |
| Psp6I | CCWGG | 5 cut(s) | 316, 527, 533, 690, 714 |
| PspEI | GGTNACC | 1 cut(s) | 381 |
| PspGI | CCWGG | 5 cut(s) | 316, 527, 533, 690, 714 |
| PspN4I | GGNNCC | 1 cut(s) | 120 |
| PspPI | GGNCC | 7 cut(s) | 118, 299, 396, 429, 461, 531, 576 |
| PsuI | RGATCY | 1 cut(s) | 826 |
| PsyI | GACNNNGTC | 1 cut(s) | 869 |
| RsaI | GTAC | 1 cut(s) | 806 |
| RsaNI | GTAC | 1 cut(s) | 805 |
| RseI | CAYNNNNRTG | 3 cut(s) | 773, 789, 924 |
| SaqAI | TTAA | 3 cut(s) | 171, 972, 980 |
| SatI | GCNGC | 1 cut(s) | 483 |
| Sau3AI | GATC | 3 cut(s) | 370, 826, 1002 |
| Sau96I | GGNCC | 7 cut(s) | 118, 299, 396, 429, 461, 531, 576 |
| SchI | GAGTC | 4 cut(s) | 204, 484, 772, 1024 |
| ScrFI | CCNGG | 5 cut(s) | 318, 529, 535, 692, 716 |
| SfaNI | GCATC | 2 cut(s) | 353, 1000 |
| SfcI | CTRYAG | 1 cut(s) | 352 |
| Sfr274I | CTCGAG | 1 cut(s) | 704 |
| SlaI | CTCGAG | 1 cut(s) | 704 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 773, 789, 924 |
| SmlI | CTYRAG | 2 cut(s) | 674, 704 |
| SmoI | CTYRAG | 2 cut(s) | 674, 704 |
| Sse9I | AATT | 2 cut(s) | 602, 986 |
| SsiI | CCGC | 3 cut(s) | 294, 485, 664 |
| SspMI | CTAG | 7 cut(s) | 39, 110, 242, 368, 513, 711, 896 |
| StyD4I | CCNGG | 5 cut(s) | 316, 527, 533, 690, 714 |
| StyI | CCWWGG | 2 cut(s) | 109, 286 |
| TaaI | ACNGT | 2 cut(s) | 234, 730 |
| TaiI | ACGT | 2 cut(s) | 192, 873 |
| TaqI | TCGA | 2 cut(s) | 681, 705 |
| TasI | AATT | 2 cut(s) | 602, 986 |
| TfiI | GAWTC | 3 cut(s) | 687, 700, 794 |
| Tru1I | TTAA | 3 cut(s) | 171, 972, 980 |
| Tru9I | TTAA | 3 cut(s) | 171, 972, 980 |
| TscAI | CASTG | 2 cut(s) | 237, 888 |
| TseI | GCWGC | 1 cut(s) | 482 |
| TspDTI | ATGAA | 3 cut(s) | 491, 830, 834 |
| TspRI | CASTG | 2 cut(s) | 237, 888 |
| Tth111I | GACNNNGTC | 1 cut(s) | 869 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 393 |
| XapI | RAATTY | 1 cut(s) | 986 |
| XbaI | TCTAGA | 1 cut(s) | 367 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 293, 439 |
| XhoI | CTCGAG | 1 cut(s) | 704 |
| XmaJI | CCTAGG | 1 cut(s) | 109 |
| XmnI | GAANNNNTTC | 1 cut(s) | 963 |
| XspI | CTAG | 7 cut(s) | 39, 110, 242, 368, 513, 711, 896 |