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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 282 |
| AarI | CACCTGC | 1 cut(s) | 48 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 618 |
| Acc36I | ACCTGC | 1 cut(s) | 48 |
| AccB1I | GGYRCC | 3 cut(s) | 458, 772, 806 |
| AccBSI | CCGCTC | 1 cut(s) | 100 |
| AccII | CGCG | 1 cut(s) | 558 |
| AciI | CCGC | 3 cut(s) | 98, 249, 810 |
| AcoI | YGGCCR | 1 cut(s) | 325 |
| AcsI | RAATTY | 1 cut(s) | 604 |
| AcvI | CACGTG | 1 cut(s) | 68 |
| AcyI | GRCGYC | 1 cut(s) | 459 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 569, 640, 769, 832, 836 |
| AflIII | ACRYGT | 1 cut(s) | 688 |
| AgsI | TTSAA | 3 cut(s) | 184, 265, 399 |
| AjiI | CACGTC | 2 cut(s) | 109, 129 |
| AjnI | CCWGG | 1 cut(s) | 892 |
| AluBI | AGCT | 3 cut(s) | 293, 451, 473 |
| AluI | AGCT | 3 cut(s) | 293, 451, 473 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 2 cut(s) | 194, 312 |
| Ama87I | CYCGRG | 1 cut(s) | 197 |
| AoxI | GGCC | 5 cut(s) | 15, 76, 325, 944, 977 |
| ApeKI | GCWGC | 3 cut(s) | 43, 46, 71 |
| ApoI | RAATTY | 1 cut(s) | 604 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspA2I | CCTAGG | 1 cut(s) | 830 |
| AspLEI | GCGC | 3 cut(s) | 212, 461, 560 |
| AspS9I | GGNCC | 3 cut(s) | 16, 77, 119 |
| AsuHPI | GGTGA | 3 cut(s) | 893, 901, 908 |
| AsuII | TTCGAA | 1 cut(s) | 973 |
| AvaI | CYCGRG | 1 cut(s) | 197 |
| AvaII | GGWCC | 1 cut(s) | 119 |
| AvrII | CCTAGG | 1 cut(s) | 830 |
| BalI | TGGCCA | 1 cut(s) | 327 |
| BanI | GGYRCC | 3 cut(s) | 458, 772, 806 |
| BanII | GRGCYC | 1 cut(s) | 453 |
| BbrPI | CACGTG | 1 cut(s) | 68 |
| BbsI | GAAGAC | 1 cut(s) | 365 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvI | GCAGC | 3 cut(s) | 30, 58, 83 |
| BccI | CCATC | 6 cut(s) | 230, 307, 386, 797, 878, 882 |
| BciT130I | CCWGG | 1 cut(s) | 894 |
| BciVI | GTATCC | 1 cut(s) | 209 |
| BcoDI | GTCTC | 2 cut(s) | 194, 312 |
| BfaI | CTAG | 3 cut(s) | 513, 618, 831 |
| BfmI | CTRYAG | 1 cut(s) | 44 |
| BfoI | RGCGCY | 1 cut(s) | 462 |
| BfuAI | ACCTGC | 1 cut(s) | 48 |
| BfuI | GTATCC | 1 cut(s) | 209 |
| BisI | GCNGC | 4 cut(s) | 44, 47, 72, 98 |
| BlnI | CCTAGG | 1 cut(s) | 830 |
| BlsI | GCNGC | 4 cut(s) | 45, 48, 73, 99 |
| Bme1390I | CCNGG | 1 cut(s) | 894 |
| Bme18I | GGWCC | 1 cut(s) | 119 |
| BmeT110I | CYCGRG | 1 cut(s) | 197 |
| BmgBI | CACGTC | 2 cut(s) | 109, 129 |
| BmgT120I | GGNCC | 3 cut(s) | 16, 77, 119 |
| BmiI | GGNNCC | 8 cut(s) | 18, 79, 460, 674, 774, 789, 808, 889 |
| BmrFI | CCNGG | 1 cut(s) | 894 |
| BmsI | GCATC | 1 cut(s) | 847 |
| BpiI | GAAGAC | 1 cut(s) | 365 |
| BpmI | CTGGAG | 1 cut(s) | 560 |
| Bpu14I | TTCGAA | 1 cut(s) | 973 |
| BsaAI | YACGTR | 1 cut(s) | 68 |
| BsaBI | GATNNNNATC | 1 cut(s) | 350 |
| BsaHI | GRCGYC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 4 cut(s) | 676, 830, 861, 892 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 569, 640, 769, 832, 836 |
| Bse1I | ACTGG | 2 cut(s) | 121, 211 |
| Bse8I | GATNNNNATC | 1 cut(s) | 350 |
| BseBI | CCWGG | 1 cut(s) | 894 |
| BseDI | CCNNGG | 4 cut(s) | 676, 830, 861, 892 |
| BseGI | GGATG | 1 cut(s) | 168 |
| BseJI | GATNNNNATC | 1 cut(s) | 350 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 569, 640, 769, 832, 836 |
| BseMII | CTCAG | 2 cut(s) | 300, 955 |
| BseNI | ACTGG | 2 cut(s) | 121, 211 |
| BseRI | GAGGAG | 2 cut(s) | 23, 26 |
| BseXI | GCAGC | 3 cut(s) | 30, 58, 83 |
| BseYI | CCCAGC | 1 cut(s) | 19 |
| BsgI | GTGCAG | 3 cut(s) | 90, 369, 861 |
| Bsh1236I | CGCG | 1 cut(s) | 558 |
| BshFI | GGCC | 5 cut(s) | 17, 78, 327, 946, 979 |
| BshNI | GGYRCC | 3 cut(s) | 458, 772, 806 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiHKCI | CYCGRG | 1 cut(s) | 197 |
| BsiSI | CCGG | 1 cut(s) | 160 |
| BslFI | GGGAC | 1 cut(s) | 830 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 569, 640, 769, 832, 836 |
| BsmAI | GTCTC | 2 cut(s) | 194, 312 |
| BsmFI | GGGAC | 1 cut(s) | 830 |
| BsnI | GGCC | 5 cut(s) | 17, 78, 327, 946, 979 |
| BsoBI | CYCGRG | 1 cut(s) | 197 |
| Bsp119I | TTCGAA | 1 cut(s) | 973 |
| Bsp1286I | GDGCHC | 1 cut(s) | 453 |
| Bsp143I | GATC | 3 cut(s) | 147, 351, 779 |
| Bsp19I | CCATGG | 1 cut(s) | 861 |
| BspACI | CCGC | 3 cut(s) | 98, 249, 810 |
| BspANI | GGCC | 5 cut(s) | 17, 78, 327, 946, 979 |
| BspCNI | CTCAG | 2 cut(s) | 299, 954 |
| BspFNI | CGCG | 1 cut(s) | 558 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 8 cut(s) | 18, 79, 460, 674, 774, 789, 808, 889 |
| BspMAI | CTGCAG | 1 cut(s) | 48 |
| BspMI | ACCTGC | 1 cut(s) | 48 |
| BspQI | GCTCTTC | 1 cut(s) | 300 |
| BspT104I | TTCGAA | 1 cut(s) | 973 |
| BspT107I | GGYRCC | 3 cut(s) | 458, 772, 806 |
| BsrBI | CCGCTC | 1 cut(s) | 100 |
| BsrI | ACTGG | 2 cut(s) | 121, 211 |
| BssECI | CCNNGG | 4 cut(s) | 676, 830, 861, 892 |
| BssMI | GATC | 3 cut(s) | 147, 351, 779 |
| BssNI | GRCGYC | 1 cut(s) | 459 |
| BssT1I | CCWWGG | 2 cut(s) | 830, 861 |
| Bst2UI | CCWGG | 1 cut(s) | 894 |
| Bst4CI | ACNGT | 1 cut(s) | 677 |
| Bst6I | CTCTTC | 2 cut(s) | 300, 689 |
| BstACI | GRCGYC | 1 cut(s) | 459 |
| BstBAI | YACGTR | 1 cut(s) | 68 |
| BstBI | TTCGAA | 1 cut(s) | 973 |
| BstC8I | GCNNGC | 2 cut(s) | 76, 666 |
| BstDEI | CTNAG | 5 cut(s) | 286, 528, 591, 941, 1008 |
| BstDSI | CCRYGG | 2 cut(s) | 676, 861 |
| BstF5I | GGATG | 1 cut(s) | 168 |
| BstFNI | CGCG | 1 cut(s) | 558 |
| BstH2I | RGCGCY | 1 cut(s) | 462 |
| BstHHI | GCGC | 3 cut(s) | 212, 461, 560 |
| BstKTI | GATC | 3 cut(s) | 150, 354, 782 |
| BstMAI | GTCTC | 2 cut(s) | 194, 312 |
| BstMBI | GATC | 3 cut(s) | 147, 351, 779 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 131, 976 |
| BstNI | CCWGG | 1 cut(s) | 894 |
| BstNSI | RCATGY | 1 cut(s) | 668 |
| BstSCI | CCNGG | 1 cut(s) | 892 |
| BstSFI | CTRYAG | 1 cut(s) | 44 |
| BstUI | CGCG | 1 cut(s) | 558 |
| BstV1I | GCAGC | 3 cut(s) | 30, 58, 83 |
| BstV2I | GAAGAC | 1 cut(s) | 365 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 803 |
| BsuI | GTATCC | 1 cut(s) | 209 |
| BsuRI | GGCC | 5 cut(s) | 17, 78, 327, 946, 979 |
| BtgI | CCRYGG | 2 cut(s) | 676, 861 |
| BtgZI | GCGATG | 1 cut(s) | 249 |
| BtrI | CACGTC | 2 cut(s) | 109, 129 |
| BtsCI | GGATG | 1 cut(s) | 168 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 386 |
| BveI | ACCTGC | 1 cut(s) | 48 |
| Cac8I | GCNNGC | 2 cut(s) | 76, 666 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 3 cut(s) | 212, 461, 560 |
| Cfr13I | GGNCC | 3 cut(s) | 16, 77, 119 |
| CseI | GACGC | 2 cut(s) | 582, 859 |
| CviAII | CATG | 5 cut(s) | 446, 665, 854, 862, 878 |
| DdeI | CTNAG | 5 cut(s) | 286, 528, 591, 941, 1008 |
| DinI | GGCGCC | 1 cut(s) | 460 |
| DpnI | GATC | 3 cut(s) | 149, 353, 781 |
| DpnII | GATC | 3 cut(s) | 147, 351, 779 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 618 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 618 |
| EaeI | YGGCCR | 1 cut(s) | 325 |
| Eam1104I | CTCTTC | 2 cut(s) | 300, 689 |
| EarI | CTCTTC | 2 cut(s) | 300, 689 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| Eco130I | CCWWGG | 2 cut(s) | 830, 861 |
| Eco147I | AGGCCT | 2 cut(s) | 946, 979 |
| Eco24I | GRGCYC | 1 cut(s) | 453 |
| Eco47I | GGWCC | 1 cut(s) | 119 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| Eco72I | CACGTG | 1 cut(s) | 68 |
| Eco88I | CYCGRG | 1 cut(s) | 197 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoO109I | RGGNCCY | 2 cut(s) | 16, 77 |
| EcoRII | CCWGG | 1 cut(s) | 892 |
| EcoT14I | CCWWGG | 2 cut(s) | 830, 861 |
| EcoT38I | GRGCYC | 1 cut(s) | 453 |
| EgeI | GGCGCC | 1 cut(s) | 460 |
| EheI | GGCGCC | 1 cut(s) | 460 |
| ErhI | CCWWGG | 2 cut(s) | 830, 861 |
| FaeI | CATG | 5 cut(s) | 449, 668, 857, 865, 881 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 170, 202, 350, 382 |
| FaqI | GGGAC | 1 cut(s) | 830 |
| FatI | CATG | 5 cut(s) | 445, 664, 853, 861, 877 |
| FauNDI | CATATG | 1 cut(s) | 625 |
| Fnu4HI | GCNGC | 4 cut(s) | 44, 47, 72, 98 |
| FokI | GGATG | 1 cut(s) | 175 |
| FriOI | GRGCYC | 1 cut(s) | 453 |
| Fsp4HI | GCNGC | 4 cut(s) | 44, 47, 72, 98 |
| FspBI | CTAG | 3 cut(s) | 513, 618, 831 |
| GlaI | GCGC | 3 cut(s) | 211, 460, 559 |
| GluI | GCNGC | 4 cut(s) | 44, 47, 72, 98 |
| GsaI | CCCAGC | 1 cut(s) | 23 |
| GsuI | CTGGAG | 1 cut(s) | 560 |
| HaeII | RGCGCY | 1 cut(s) | 462 |
| HaeIII | GGCC | 5 cut(s) | 17, 78, 327, 946, 979 |
| HapII | CCGG | 1 cut(s) | 160 |
| HgaI | GACGC | 2 cut(s) | 582, 859 |
| HhaI | GCGC | 3 cut(s) | 212, 461, 560 |
| Hin1I | GRCGYC | 1 cut(s) | 459 |
| Hin1II | CATG | 5 cut(s) | 449, 668, 857, 865, 881 |
| Hin6I | GCGC | 3 cut(s) | 210, 459, 558 |
| HinP1I | GCGC | 3 cut(s) | 210, 459, 558 |
| HincII | GTYRAC | 2 cut(s) | 144, 686 |
| HindII | GTYRAC | 2 cut(s) | 144, 686 |
| HinfI | GANTC | 3 cut(s) | 361, 542, 937 |
| HpaII | CCGG | 1 cut(s) | 160 |
| HphI | GGTGA | 3 cut(s) | 893, 901, 908 |
| Hpy166II | GTNNAC | 3 cut(s) | 144, 686, 820 |
| Hpy188I | TCNGA | 5 cut(s) | 289, 312, 411, 718, 936 |
| Hpy188III | TCNNGA | 5 cut(s) | 199, 355, 446, 539, 609 |
| Hpy8I | GTNNAC | 3 cut(s) | 144, 686, 820 |
| HpyAV | CCTTC | 3 cut(s) | 382, 638, 969 |
| HpyCH4III | ACNGT | 1 cut(s) | 677 |
| HpyCH4IV | ACGT | 5 cut(s) | 67, 108, 128, 430, 688 |
| HpyCH4V | TGCA | 5 cut(s) | 46, 71, 386, 668, 842 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 131, 976 |
| HpyF3I | CTNAG | 5 cut(s) | 286, 528, 591, 941, 1008 |
| HpySE526I | ACGT | 5 cut(s) | 67, 108, 128, 430, 688 |
| Hsp92I | GRCGYC | 1 cut(s) | 459 |
| Hsp92II | CATG | 5 cut(s) | 449, 668, 857, 865, 881 |
| HspAI | GCGC | 3 cut(s) | 210, 459, 558 |
| KasI | GGCGCC | 1 cut(s) | 458 |
| Kzo9I | GATC | 3 cut(s) | 147, 351, 779 |
| LguI | GCTCTTC | 1 cut(s) | 300 |
| LmnI | GCTCC | 3 cut(s) | 580, 787, 893 |
| Lsp1109I | GCAGC | 3 cut(s) | 30, 58, 83 |
| LweI | GCATC | 1 cut(s) | 847 |
| MaeI | CTAG | 3 cut(s) | 513, 618, 831 |
| MaeII | ACGT | 5 cut(s) | 67, 108, 128, 430, 688 |
| MaeIII | GTNAC | 2 cut(s) | 167, 728 |
| MalI | GATC | 3 cut(s) | 149, 353, 781 |
| MbiI | CCGCTC | 1 cut(s) | 100 |
| MboI | GATC | 3 cut(s) | 147, 351, 779 |
| MboII | GAAGA | 4 cut(s) | 287, 370, 511, 706 |
| MhlI | GDGCHC | 1 cut(s) | 453 |
| MlsI | TGGCCA | 1 cut(s) | 327 |
| MluCI | AATT | 2 cut(s) | 403, 604 |
| MluNI | TGGCCA | 1 cut(s) | 327 |
| Mly113I | GGCGCC | 1 cut(s) | 459 |
| MlyI | GAGTC | 3 cut(s) | 355, 551, 931 |
| MmeI | TCCRAC | 1 cut(s) | 741 |
| Mox20I | TGGCCA | 1 cut(s) | 327 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 1 cut(s) | 327 |
| MseI | TTAA | 2 cut(s) | 59, 465 |
| MslI | CAYNNNNRTG | 3 cut(s) | 801, 879, 882 |
| Msp20I | TGGCCA | 1 cut(s) | 327 |
| MspI | CCGG | 1 cut(s) | 160 |
| MspR9I | CCNGG | 1 cut(s) | 894 |
| MvaI | CCWGG | 1 cut(s) | 894 |
| MvnI | CGCG | 1 cut(s) | 558 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 131, 976 |
| NarI | GGCGCC | 1 cut(s) | 459 |
| NcoI | CCATGG | 1 cut(s) | 861 |
| NdeI | CATATG | 1 cut(s) | 625 |
| NdeII | GATC | 3 cut(s) | 147, 351, 779 |
| NlaIII | CATG | 5 cut(s) | 449, 668, 857, 865, 881 |
| NlaIV | GGNNCC | 8 cut(s) | 18, 79, 460, 674, 774, 789, 808, 889 |
| NmeAIII | GCCGAG | 1 cut(s) | 680 |
| NspI | RCATGY | 1 cut(s) | 668 |
| NspV | TTCGAA | 1 cut(s) | 973 |
| PaeI | GCATGC | 1 cut(s) | 668 |
| PaeR7I | CTCGAG | 1 cut(s) | 197 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PaqCI | CACCTGC | 1 cut(s) | 48 |
| PceI | AGGCCT | 2 cut(s) | 946, 979 |
| PciSI | GCTCTTC | 1 cut(s) | 300 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 580 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PkrI | GCNGC | 4 cut(s) | 45, 48, 73, 99 |
| PleI | GAGTC | 3 cut(s) | 355, 550, 931 |
| PluTI | GGCGCC | 1 cut(s) | 462 |
| PmaCI | CACGTG | 1 cut(s) | 68 |
| PmlI | CACGTG | 1 cut(s) | 68 |
| PpsI | GAGTC | 3 cut(s) | 355, 550, 931 |
| Ppu21I | YACGTR | 1 cut(s) | 68 |
| PsiI | TTATAA | 1 cut(s) | 282 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| Psp6I | CCWGG | 1 cut(s) | 892 |
| PspCI | CACGTG | 1 cut(s) | 68 |
| PspFI | CCCAGC | 1 cut(s) | 19 |
| PspGI | CCWGG | 1 cut(s) | 892 |
| PspN4I | GGNNCC | 8 cut(s) | 18, 79, 460, 674, 774, 789, 808, 889 |
| PspPI | GGNCC | 3 cut(s) | 16, 77, 119 |
| PstI | CTGCAG | 1 cut(s) | 48 |
| RseI | CAYNNNNRTG | 3 cut(s) | 801, 879, 882 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SapI | GCTCTTC | 1 cut(s) | 300 |
| SaqAI | TTAA | 2 cut(s) | 59, 465 |
| SatI | GCNGC | 4 cut(s) | 44, 47, 72, 98 |
| Sau3AI | GATC | 3 cut(s) | 147, 351, 779 |
| Sau96I | GGNCC | 3 cut(s) | 16, 77, 119 |
| SchI | GAGTC | 3 cut(s) | 355, 551, 931 |
| ScrFI | CCNGG | 1 cut(s) | 894 |
| SduI | GDGCHC | 1 cut(s) | 453 |
| SfaNI | GCATC | 1 cut(s) | 847 |
| SfcI | CTRYAG | 1 cut(s) | 44 |
| SfoI | GGCGCC | 1 cut(s) | 460 |
| Sfr274I | CTCGAG | 1 cut(s) | 197 |
| SfuI | TTCGAA | 1 cut(s) | 973 |
| SinI | GGWCC | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 197 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 801, 879, 882 |
| SmlI | CTYRAG | 1 cut(s) | 197 |
| SmoI | CTYRAG | 1 cut(s) | 197 |
| SphI | GCATGC | 1 cut(s) | 668 |
| Sse9I | AATT | 2 cut(s) | 403, 604 |
| SseBI | AGGCCT | 2 cut(s) | 946, 979 |
| SsiI | CCGC | 3 cut(s) | 98, 249, 810 |
| SspDI | GGCGCC | 1 cut(s) | 458 |
| SspMI | CTAG | 3 cut(s) | 513, 618, 831 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StuI | AGGCCT | 2 cut(s) | 946, 979 |
| StyD4I | CCNGG | 1 cut(s) | 892 |
| StyI | CCWWGG | 2 cut(s) | 830, 861 |
| TaaI | ACNGT | 1 cut(s) | 677 |
| TaiI | ACGT | 5 cut(s) | 70, 111, 131, 433, 691 |
| TaqI | TCGA | 4 cut(s) | 198, 354, 778, 973 |
| TaqII | GACCGA | 1 cut(s) | 129 |
| TasI | AATT | 2 cut(s) | 403, 604 |
| TauI | GCSGC | 1 cut(s) | 100 |
| Tru1I | TTAA | 2 cut(s) | 59, 465 |
| Tru9I | TTAA | 2 cut(s) | 59, 465 |
| TscAI | CASTG | 2 cut(s) | 121, 393 |
| TseI | GCWGC | 3 cut(s) | 43, 46, 71 |
| TspDTI | ATGAA | 1 cut(s) | 434 |
| TspGWI | ACGGA | 1 cut(s) | 685 |
| TspRI | CASTG | 2 cut(s) | 121, 393 |
| VpaK11BI | GGWCC | 1 cut(s) | 119 |
| XapI | RAATTY | 1 cut(s) | 604 |
| XceI | RCATGY | 1 cut(s) | 668 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 113, 833, 881 |
| XhoI | CTCGAG | 1 cut(s) | 197 |
| XmaJI | CCTAGG | 1 cut(s) | 830 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 3 cut(s) | 513, 618, 831 |