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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 549 |
| AccB1I | GGYRCC | 1 cut(s) | 389 |
| AccII | CGCG | 2 cut(s) | 182, 489 |
| AccIII | TCCGGA | 1 cut(s) | 469 |
| AciI | CCGC | 1 cut(s) | 577 |
| AclI | AACGTT | 1 cut(s) | 255 |
| AcyI | GRCGYC | 1 cut(s) | 390 |
| AfaI | GTAC | 1 cut(s) | 644 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 500 |
| AgsI | TTSAA | 4 cut(s) | 22, 110, 327, 700 |
| AjiI | CACGTC | 1 cut(s) | 79 |
| AluBI | AGCT | 3 cut(s) | 98, 122, 379 |
| AluI | AGCT | 3 cut(s) | 98, 122, 379 |
| Alw21I | GWGCWC | 2 cut(s) | 381, 595 |
| Alw26I | GTCTC | 3 cut(s) | 32, 313, 600 |
| Alw44I | GTGCAC | 1 cut(s) | 591 |
| Aor13HI | TCCGGA | 1 cut(s) | 469 |
| AoxI | GGCC | 1 cut(s) | 703 |
| ApaLI | GTGCAC | 1 cut(s) | 591 |
| ApeKI | GCWGC | 2 cut(s) | 98, 241 |
| AspLEI | GCGC | 3 cut(s) | 184, 392, 491 |
| AspS9I | GGNCC | 3 cut(s) | 67, 551, 703 |
| AvaII | GGWCC | 2 cut(s) | 67, 551 |
| BaeGI | GKGCMC | 1 cut(s) | 595 |
| BanI | GGYRCC | 1 cut(s) | 389 |
| BanII | GRGCYC | 1 cut(s) | 381 |
| Bbv12I | GWGCWC | 2 cut(s) | 381, 595 |
| BbvCI | CCTCAGC | 1 cut(s) | 90 |
| BbvI | GCAGC | 2 cut(s) | 85, 253 |
| BccI | CCATC | 1 cut(s) | 158 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 3 cut(s) | 32, 313, 600 |
| BfaI | CTAG | 1 cut(s) | 444 |
| BfmI | CTRYAG | 1 cut(s) | 481 |
| BfoI | RGCGCY | 1 cut(s) | 393 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 2 cut(s) | 99, 242 |
| BlsI | GCNGC | 2 cut(s) | 100, 243 |
| Bme18I | GGWCC | 2 cut(s) | 67, 551 |
| BmgBI | CACGTC | 1 cut(s) | 79 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 551, 703 |
| BmiI | GGNNCC | 3 cut(s) | 68, 391, 457 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| Bpu10I | CCTNAGC | 2 cut(s) | 49, 90 |
| BpuEI | CTTGAG | 1 cut(s) | 257 |
| BsaHI | GRCGYC | 1 cut(s) | 390 |
| BsaJI | CCNNGG | 3 cut(s) | 450, 495, 601 |
| BsaWI | WCCGGW | 1 cut(s) | 469 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 500 |
| Bse1I | ACTGG | 3 cut(s) | 39, 49, 718 |
| Bse3DI | GCAATG | 1 cut(s) | 675 |
| BseAI | TCCGGA | 1 cut(s) | 469 |
| BseDI | CCNNGG | 3 cut(s) | 450, 495, 601 |
| BseGI | GGATG | 1 cut(s) | 676 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 500 |
| BseMI | GCAATG | 1 cut(s) | 675 |
| BseMII | CTCAG | 2 cut(s) | 63, 104 |
| BseNI | ACTGG | 3 cut(s) | 39, 49, 718 |
| BseRI | GAGGAG | 1 cut(s) | 78 |
| BseSI | GKGCMC | 1 cut(s) | 595 |
| BseXI | GCAGC | 2 cut(s) | 85, 253 |
| Bsh1236I | CGCG | 2 cut(s) | 182, 489 |
| BshFI | GGCC | 1 cut(s) | 705 |
| BshNI | GGYRCC | 1 cut(s) | 389 |
| BsiHKAI | GWGCWC | 2 cut(s) | 381, 595 |
| BsiSI | CCGG | 1 cut(s) | 470 |
| BslFI | GGGAC | 1 cut(s) | 545 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 500 |
| BsmAI | GTCTC | 3 cut(s) | 32, 313, 600 |
| BsmBI | CGTCTC | 2 cut(s) | 313, 600 |
| BsmFI | GGGAC | 1 cut(s) | 545 |
| BsmI | GAATGC | 1 cut(s) | 355 |
| BsnI | GGCC | 1 cut(s) | 705 |
| Bsp1286I | GDGCHC | 2 cut(s) | 381, 595 |
| Bsp13I | TCCGGA | 1 cut(s) | 469 |
| Bsp143I | GATC | 1 cut(s) | 661 |
| BspACI | CCGC | 1 cut(s) | 577 |
| BspANI | GGCC | 1 cut(s) | 705 |
| BspCNI | CTCAG | 2 cut(s) | 62, 103 |
| BspEI | TCCGGA | 1 cut(s) | 469 |
| BspFNI | CGCG | 2 cut(s) | 182, 489 |
| BspHI | TCATGA | 2 cut(s) | 159, 373 |
| BspLI | GGNNCC | 3 cut(s) | 68, 391, 457 |
| BspT107I | GGYRCC | 1 cut(s) | 389 |
| BsrDI | GCAATG | 1 cut(s) | 675 |
| BsrI | ACTGG | 3 cut(s) | 39, 49, 718 |
| BssECI | CCNNGG | 3 cut(s) | 450, 495, 601 |
| BssMI | GATC | 1 cut(s) | 661 |
| BssNI | GRCGYC | 1 cut(s) | 390 |
| BssT1I | CCWWGG | 1 cut(s) | 495 |
| Bst4CI | ACNGT | 1 cut(s) | 602 |
| BstACI | GRCGYC | 1 cut(s) | 390 |
| BstC8I | GCNNGC | 2 cut(s) | 96, 591 |
| BstDEI | CTNAG | 4 cut(s) | 49, 90, 522, 683 |
| BstDSI | CCRYGG | 2 cut(s) | 450, 601 |
| BstF5I | GGATG | 1 cut(s) | 676 |
| BstFNI | CGCG | 2 cut(s) | 182, 489 |
| BstH2I | RGCGCY | 1 cut(s) | 393 |
| BstHHI | GCGC | 3 cut(s) | 184, 392, 491 |
| BstKTI | GATC | 1 cut(s) | 664 |
| BstMAI | GTCTC | 3 cut(s) | 32, 313, 600 |
| BstMBI | GATC | 1 cut(s) | 661 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 119, 140, 617, 638 |
| BstSFI | CTRYAG | 1 cut(s) | 481 |
| BstSLI | GKGCMC | 1 cut(s) | 595 |
| BstUI | CGCG | 2 cut(s) | 182, 489 |
| BstV1I | GCAGC | 2 cut(s) | 85, 253 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 713 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 705 |
| BtgI | CCRYGG | 2 cut(s) | 450, 601 |
| BtrI | CACGTC | 1 cut(s) | 79 |
| BtsCI | GGATG | 1 cut(s) | 676 |
| BtsIMutI | CAGTG | 1 cut(s) | 32 |
| Cac8I | GCNNGC | 2 cut(s) | 96, 591 |
| CciI | TCATGA | 2 cut(s) | 159, 373 |
| CfoI | GCGC | 3 cut(s) | 184, 392, 491 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 551, 703 |
| CseI | GACGC | 3 cut(s) | 188, 513, 617 |
| Csp6I | GTAC | 1 cut(s) | 643 |
| CviAII | CATG | 3 cut(s) | 160, 374, 394 |
| CviJI | RGCY | 7 cut(s) | 48, 98, 122, 143, 149, 379, 705 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 98, 122, 143, 149, 379, 705 |
| CviQI | GTAC | 1 cut(s) | 643 |
| DdeI | CTNAG | 4 cut(s) | 49, 90, 522, 683 |
| DinI | GGCGCC | 1 cut(s) | 391 |
| DpnI | GATC | 1 cut(s) | 663 |
| DpnII | GATC | 1 cut(s) | 661 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 549 |
| Ecl136II | GAGCTC | 1 cut(s) | 379 |
| Eco130I | CCWWGG | 1 cut(s) | 495 |
| Eco24I | GRGCYC | 1 cut(s) | 381 |
| Eco47I | GGWCC | 2 cut(s) | 67, 551 |
| Eco53kI | GAGCTC | 1 cut(s) | 379 |
| EcoICRI | GAGCTC | 1 cut(s) | 379 |
| EcoT14I | CCWWGG | 1 cut(s) | 495 |
| EcoT38I | GRGCYC | 1 cut(s) | 381 |
| EgeI | GGCGCC | 1 cut(s) | 391 |
| EheI | GGCGCC | 1 cut(s) | 391 |
| ErhI | CCWWGG | 1 cut(s) | 495 |
| Esp3I | CGTCTC | 2 cut(s) | 313, 600 |
| FaeI | CATG | 3 cut(s) | 163, 377, 397 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 545 |
| FatI | CATG | 3 cut(s) | 159, 373, 393 |
| FauNDI | CATATG | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 2 cut(s) | 99, 242 |
| FokI | GGATG | 1 cut(s) | 683 |
| FriOI | GRGCYC | 1 cut(s) | 381 |
| Fsp4HI | GCNGC | 2 cut(s) | 99, 242 |
| FspBI | CTAG | 1 cut(s) | 444 |
| GlaI | GCGC | 3 cut(s) | 183, 391, 490 |
| GluI | GCNGC | 2 cut(s) | 99, 242 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeII | RGCGCY | 1 cut(s) | 393 |
| HaeIII | GGCC | 1 cut(s) | 705 |
| HapII | CCGG | 1 cut(s) | 470 |
| HgaI | GACGC | 3 cut(s) | 188, 513, 617 |
| HhaI | GCGC | 3 cut(s) | 184, 392, 491 |
| Hin1I | GRCGYC | 1 cut(s) | 390 |
| Hin1II | CATG | 3 cut(s) | 163, 377, 397 |
| Hin6I | GCGC | 3 cut(s) | 182, 390, 489 |
| HinP1I | GCGC | 3 cut(s) | 182, 390, 489 |
| HinfI | GANTC | 3 cut(s) | 263, 289, 473 |
| HpaII | CCGG | 1 cut(s) | 470 |
| Hpy166II | GTNNAC | 2 cut(s) | 593, 691 |
| Hpy188I | TCNGA | 2 cut(s) | 71, 339 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 160, 260, 275, 374, 470, 540, 626, 665 |
| Hpy8I | GTNNAC | 2 cut(s) | 593, 691 |
| HpyAV | CCTTC | 1 cut(s) | 563 |
| HpyCH4III | ACNGT | 1 cut(s) | 602 |
| HpyCH4IV | ACGT | 4 cut(s) | 78, 255, 399, 544 |
| HpyCH4V | TGCA | 2 cut(s) | 353, 593 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 119, 140, 617, 638 |
| HpyF3I | CTNAG | 4 cut(s) | 49, 90, 522, 683 |
| HpySE526I | ACGT | 4 cut(s) | 78, 255, 399, 544 |
| Hsp92I | GRCGYC | 1 cut(s) | 390 |
| Hsp92II | CATG | 3 cut(s) | 163, 377, 397 |
| HspAI | GCGC | 3 cut(s) | 182, 390, 489 |
| KasI | GGCGCC | 1 cut(s) | 389 |
| Kpn2I | TCCGGA | 1 cut(s) | 469 |
| Kzo9I | GATC | 1 cut(s) | 661 |
| LmnI | GCTCC | 2 cut(s) | 189, 511 |
| Lsp1109I | GCAGC | 2 cut(s) | 85, 253 |
| MaeI | CTAG | 1 cut(s) | 444 |
| MaeII | ACGT | 4 cut(s) | 78, 255, 399, 544 |
| MaeIII | GTNAC | 2 cut(s) | 5, 260 |
| MalI | GATC | 1 cut(s) | 663 |
| MboI | GATC | 1 cut(s) | 661 |
| MboII | GAAGA | 2 cut(s) | 442, 671 |
| MhlI | GDGCHC | 2 cut(s) | 381, 595 |
| MluCI | AATT | 2 cut(s) | 331, 535 |
| Mly113I | GGCGCC | 1 cut(s) | 390 |
| MlyI | GAGTC | 3 cut(s) | 257, 283, 482 |
| MnlI | CCTC | 7 cut(s) | 99, 124, 209, 494, 579, 631, 661 |
| MroI | TCCGGA | 1 cut(s) | 469 |
| MseI | TTAA | 1 cut(s) | 727 |
| MslI | CAYNNNNRTG | 2 cut(s) | 158, 174 |
| MspI | CCGG | 1 cut(s) | 470 |
| Mva1269I | GAATGC | 1 cut(s) | 355 |
| MvnI | CGCG | 2 cut(s) | 182, 489 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 119, 140, 617, 638 |
| NarI | GGCGCC | 1 cut(s) | 390 |
| NdeI | CATATG | 1 cut(s) | 171 |
| NdeII | GATC | 1 cut(s) | 661 |
| NlaIII | CATG | 3 cut(s) | 163, 377, 397 |
| NlaIV | GGNNCC | 3 cut(s) | 68, 391, 457 |
| NmuCI | GTSAC | 1 cut(s) | 260 |
| PagI | TCATGA | 2 cut(s) | 159, 373 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 511 |
| PctI | GAATGC | 1 cut(s) | 355 |
| PkrI | GCNGC | 2 cut(s) | 100, 243 |
| PleI | GAGTC | 3 cut(s) | 257, 283, 481 |
| PluTI | GGCGCC | 1 cut(s) | 393 |
| PpsI | GAGTC | 3 cut(s) | 257, 283, 481 |
| Psp124BI | GAGCTC | 1 cut(s) | 381 |
| Psp1406I | AACGTT | 1 cut(s) | 255 |
| PspN4I | GGNNCC | 3 cut(s) | 68, 391, 457 |
| PspPI | GGNCC | 3 cut(s) | 67, 551, 703 |
| RsaI | GTAC | 1 cut(s) | 644 |
| RsaNI | GTAC | 1 cut(s) | 643 |
| RseI | CAYNNNNRTG | 2 cut(s) | 158, 174 |
| SacI | GAGCTC | 1 cut(s) | 381 |
| SaqAI | TTAA | 1 cut(s) | 727 |
| SatI | GCNGC | 2 cut(s) | 99, 242 |
| Sau3AI | GATC | 1 cut(s) | 661 |
| Sau96I | GGNCC | 3 cut(s) | 67, 551, 703 |
| SchI | GAGTC | 3 cut(s) | 257, 283, 482 |
| SduI | GDGCHC | 2 cut(s) | 381, 595 |
| SfcI | CTRYAG | 1 cut(s) | 481 |
| SfoI | GGCGCC | 1 cut(s) | 391 |
| SinI | GGWCC | 2 cut(s) | 67, 551 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 158, 174 |
| SmlI | CTYRAG | 1 cut(s) | 236 |
| SmoI | CTYRAG | 1 cut(s) | 236 |
| Sse9I | AATT | 2 cut(s) | 331, 535 |
| SsiI | CCGC | 1 cut(s) | 577 |
| SspDI | GGCGCC | 1 cut(s) | 389 |
| SspMI | CTAG | 1 cut(s) | 444 |
| SstI | GAGCTC | 1 cut(s) | 381 |
| StyI | CCWWGG | 1 cut(s) | 495 |
| TaaI | ACNGT | 1 cut(s) | 602 |
| TaiI | ACGT | 4 cut(s) | 81, 258, 402, 547 |
| TasI | AATT | 2 cut(s) | 331, 535 |
| Tru1I | TTAA | 1 cut(s) | 727 |
| Tru9I | TTAA | 1 cut(s) | 727 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseFI | GTSAC | 1 cut(s) | 260 |
| TseI | GCWGC | 2 cut(s) | 98, 241 |
| Tsp45I | GTSAC | 1 cut(s) | 260 |
| TspDTI | ATGAA | 4 cut(s) | 153, 188, 362, 410 |
| TspGWI | ACGGA | 1 cut(s) | 581 |
| TspRI | CASTG | 1 cut(s) | 39 |
| VneI | GTGCAC | 1 cut(s) | 591 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 551 |
| XspI | CTAG | 1 cut(s) | 444 |