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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 330 |
| AarI | CACCTGC | 1 cut(s) | 357 |
| Acc36I | ACCTGC | 2 cut(s) | 264, 357 |
| AccI | GTMKAC | 1 cut(s) | 286 |
| AccII | CGCG | 2 cut(s) | 274, 276 |
| AciI | CCGC | 2 cut(s) | 835, 909 |
| AclWI | GGATC | 3 cut(s) | 345, 460, 583 |
| AcsI | RAATTY | 1 cut(s) | 902 |
| AcuI | CTGAAG | 2 cut(s) | 405, 446 |
| AdeI | CACNNNGTG | 1 cut(s) | 214 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 110, 363, 378 |
| AgsI | TTSAA | 4 cut(s) | 297, 770, 850, 1061 |
| AjiI | CACGTC | 1 cut(s) | 610 |
| AjnI | CCWGG | 3 cut(s) | 131, 579, 603 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 762, 794 |
| AleI | CACNNNNGTG | 1 cut(s) | 926 |
| AluBI | AGCT | 4 cut(s) | 430, 497, 535, 598 |
| AluI | AGCT | 4 cut(s) | 430, 497, 535, 598 |
| Alw21I | GWGCWC | 1 cut(s) | 519 |
| Alw26I | GTCTC | 3 cut(s) | 481, 766, 1093 |
| AlwI | GGATC | 3 cut(s) | 345, 460, 583 |
| AoxI | GGCC | 1 cut(s) | 567 |
| ApeKI | GCWGC | 6 cut(s) | 89, 184, 205, 263, 266, 653 |
| ApoI | RAATTY | 1 cut(s) | 902 |
| AspA2I | CCTAGG | 1 cut(s) | 418 |
| AspLEI | GCGC | 2 cut(s) | 276, 278 |
| AvrII | CCTAGG | 1 cut(s) | 418 |
| BbsI | GAAGAC | 1 cut(s) | 747 |
| Bbv12I | GWGCWC | 1 cut(s) | 519 |
| BbvI | GCAGC | 6 cut(s) | 101, 196, 217, 275, 278, 665 |
| BccI | CCATC | 4 cut(s) | 566, 689, 816, 970 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 238, 272, 989, 1023 |
| BciT130I | CCWGG | 3 cut(s) | 133, 581, 605 |
| BcoDI | GTCTC | 3 cut(s) | 481, 766, 1093 |
| BfaI | CTAG | 4 cut(s) | 303, 378, 419, 812 |
| BfmI | CTRYAG | 2 cut(s) | 403, 1008 |
| BfuAI | ACCTGC | 2 cut(s) | 264, 357 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 662 |
| BisI | GCNGC | 6 cut(s) | 90, 185, 206, 264, 267, 654 |
| BlnI | CCTAGG | 1 cut(s) | 418 |
| BlpI | GCTNAGC | 1 cut(s) | 599 |
| BlsI | GCNGC | 6 cut(s) | 91, 186, 207, 265, 268, 655 |
| Bme1390I | CCNGG | 3 cut(s) | 133, 581, 605 |
| BmgBI | CACGTC | 1 cut(s) | 610 |
| BmrFI | CCNGG | 3 cut(s) | 133, 581, 605 |
| BpiI | GAAGAC | 1 cut(s) | 747 |
| BpmI | CTGGAG | 2 cut(s) | 701, 730 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 599 |
| BpuEI | CTTGAG | 2 cut(s) | 548, 578 |
| Bsa29I | ATCGAT | 2 cut(s) | 168, 999 |
| BsaBI | GATNNNNATC | 1 cut(s) | 315 |
| BsaI | GGTCTC | 3 cut(s) | 481, 766, 1093 |
| BsaJI | CCNNGG | 3 cut(s) | 418, 657, 1104 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 110, 363, 378 |
| Bse1I | ACTGG | 2 cut(s) | 290, 718 |
| Bse8I | GATNNNNATC | 1 cut(s) | 315 |
| BseBI | CCWGG | 3 cut(s) | 133, 581, 605 |
| BseCI | ATCGAT | 2 cut(s) | 168, 999 |
| BseDI | CCNNGG | 3 cut(s) | 418, 657, 1104 |
| BseGI | GGATG | 4 cut(s) | 97, 684, 712, 1074 |
| BseJI | GATNNNNATC | 1 cut(s) | 315 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 110, 363, 378 |
| BseMII | CTCAG | 1 cut(s) | 885 |
| BseNI | ACTGG | 2 cut(s) | 290, 718 |
| BsePI | GCGCGC | 1 cut(s) | 274 |
| BseXI | GCAGC | 6 cut(s) | 101, 196, 217, 275, 278, 665 |
| BseYI | CCCAGC | 1 cut(s) | 244 |
| Bsh1236I | CGCG | 2 cut(s) | 274, 276 |
| BshFI | GGCC | 1 cut(s) | 569 |
| BshVI | ATCGAT | 2 cut(s) | 168, 999 |
| BsiHKAI | GWGCWC | 1 cut(s) | 519 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 110, 363, 378 |
| BsmAI | GTCTC | 3 cut(s) | 481, 766, 1093 |
| BsnI | GGCC | 1 cut(s) | 569 |
| Bso31I | GGTCTC | 3 cut(s) | 481, 766, 1093 |
| Bsp1286I | GDGCHC | 1 cut(s) | 519 |
| Bsp143I | GATC | 4 cut(s) | 337, 452, 588, 1017 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 599 |
| BspACI | CCGC | 2 cut(s) | 835, 909 |
| BspANI | GGCC | 1 cut(s) | 569 |
| BspCNI | CTCAG | 1 cut(s) | 884 |
| BspDI | ATCGAT | 2 cut(s) | 168, 999 |
| BspFNI | CGCG | 2 cut(s) | 274, 276 |
| BspMAI | CTGCAG | 1 cut(s) | 1012 |
| BspMI | ACCTGC | 2 cut(s) | 264, 357 |
| BspPI | GGATC | 3 cut(s) | 345, 460, 583 |
| BspTNI | GGTCTC | 3 cut(s) | 481, 766, 1093 |
| BsrI | ACTGG | 2 cut(s) | 290, 718 |
| BssECI | CCNNGG | 3 cut(s) | 418, 657, 1104 |
| BssHII | GCGCGC | 1 cut(s) | 274 |
| BssMI | GATC | 4 cut(s) | 337, 452, 588, 1017 |
| BssT1I | CCWWGG | 2 cut(s) | 418, 657 |
| Bst2UI | CCWGG | 3 cut(s) | 133, 581, 605 |
| Bst4CI | ACNGT | 4 cut(s) | 214, 236, 504, 619 |
| Bst6I | CTCTTC | 1 cut(s) | 765 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 214 |
| BstC8I | GCNNGC | 8 cut(s) | 81, 199, 203, 219, 228, 250, 261, 276 |
| BstDEI | CTNAG | 6 cut(s) | 161, 474, 554, 599, 871, 984 |
| BstDSI | CCRYGG | 1 cut(s) | 1104 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 108, 376 |
| BstF5I | GGATG | 4 cut(s) | 97, 684, 712, 1074 |
| BstFNI | CGCG | 2 cut(s) | 274, 276 |
| BstHHI | GCGC | 2 cut(s) | 276, 278 |
| BstKTI | GATC | 4 cut(s) | 340, 455, 591, 1020 |
| BstMAI | GTCTC | 3 cut(s) | 481, 766, 1093 |
| BstMBI | GATC | 4 cut(s) | 337, 452, 588, 1017 |
| BstNI | CCWGG | 3 cut(s) | 133, 581, 605 |
| BstSCI | CCNGG | 3 cut(s) | 131, 579, 603 |
| BstSFI | CTRYAG | 2 cut(s) | 403, 1008 |
| BstUI | CGCG | 2 cut(s) | 274, 276 |
| BstV1I | GCAGC | 6 cut(s) | 101, 196, 217, 275, 278, 665 |
| BstV2I | GAAGAC | 1 cut(s) | 747 |
| Bsu15I | ATCGAT | 2 cut(s) | 168, 999 |
| BsuRI | GGCC | 1 cut(s) | 569 |
| BsuTUI | ATCGAT | 2 cut(s) | 168, 999 |
| BtgI | CCRYGG | 1 cut(s) | 1104 |
| BtrI | CACGTC | 1 cut(s) | 610 |
| BtsCI | GGATG | 4 cut(s) | 97, 684, 712, 1074 |
| BtsIMutI | CAGTG | 1 cut(s) | 241 |
| BveI | ACCTGC | 2 cut(s) | 264, 357 |
| Cac8I | GCNNGC | 8 cut(s) | 81, 199, 203, 219, 228, 250, 261, 276 |
| CfoI | GCGC | 2 cut(s) | 276, 278 |
| ClaI | ATCGAT | 2 cut(s) | 168, 999 |
| CviAII | CATG | 1 cut(s) | 1048 |
| DdeI | CTNAG | 6 cut(s) | 161, 474, 554, 599, 871, 984 |
| DpnI | GATC | 4 cut(s) | 339, 454, 590, 1019 |
| DpnII | GATC | 4 cut(s) | 337, 452, 588, 1017 |
| DraIII | CACNNNGTG | 1 cut(s) | 214 |
| Eam1104I | CTCTTC | 1 cut(s) | 765 |
| EarI | CTCTTC | 1 cut(s) | 765 |
| Eco130I | CCWWGG | 2 cut(s) | 418, 657 |
| Eco31I | GGTCTC | 3 cut(s) | 481, 766, 1093 |
| Eco32I | GATATC | 1 cut(s) | 919 |
| Eco57I | CTGAAG | 2 cut(s) | 405, 446 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 108, 376 |
| EcoRI | GAATTC | 1 cut(s) | 902 |
| EcoRII | CCWGG | 3 cut(s) | 131, 579, 603 |
| EcoRV | GATATC | 1 cut(s) | 919 |
| EcoT14I | CCWWGG | 2 cut(s) | 418, 657 |
| ErhI | CCWWGG | 2 cut(s) | 418, 657 |
| FaeI | CATG | 1 cut(s) | 1051 |
| FatI | CATG | 1 cut(s) | 1047 |
| FauNDI | CATATG | 1 cut(s) | 702 |
| FblI | GTMKAC | 1 cut(s) | 286 |
| Fnu4HI | GCNGC | 6 cut(s) | 90, 185, 206, 264, 267, 654 |
| FokI | GGATG | 4 cut(s) | 84, 671, 719, 1061 |
| Fsp4HI | GCNGC | 6 cut(s) | 90, 185, 206, 264, 267, 654 |
| FspBI | CTAG | 4 cut(s) | 303, 378, 419, 812 |
| GlaI | GCGC | 2 cut(s) | 275, 277 |
| GluI | GCNGC | 6 cut(s) | 90, 185, 206, 264, 267, 654 |
| GsaI | CCCAGC | 1 cut(s) | 248 |
| GsuI | CTGGAG | 2 cut(s) | 701, 730 |
| HaeIII | GGCC | 1 cut(s) | 569 |
| HhaI | GCGC | 2 cut(s) | 276, 278 |
| Hin1II | CATG | 1 cut(s) | 1051 |
| Hin6I | GCGC | 2 cut(s) | 274, 276 |
| HinP1I | GCGC | 2 cut(s) | 274, 276 |
| HindIII | AAGCTT | 1 cut(s) | 596 |
| HinfI | GANTC | 9 cut(s) | 24, 165, 542, 576, 710, 743, 794, 946, 996 |
| Hpy166II | GTNNAC | 2 cut(s) | 287, 954 |
| Hpy188I | TCNGA | 1 cut(s) | 874 |
| Hpy188III | TCNNGA | 3 cut(s) | 747, 806, 1031 |
| Hpy8I | GTNNAC | 2 cut(s) | 287, 954 |
| HpyAV | CCTTC | 2 cut(s) | 744, 967 |
| HpyCH4III | ACNGT | 4 cut(s) | 214, 236, 504, 619 |
| HpyCH4IV | ACGT | 1 cut(s) | 609 |
| HpyF3I | CTNAG | 6 cut(s) | 161, 474, 554, 599, 871, 984 |
| HpySE526I | ACGT | 1 cut(s) | 609 |
| Hsp92II | CATG | 1 cut(s) | 1051 |
| HspAI | GCGC | 2 cut(s) | 274, 276 |
| Kzo9I | GATC | 4 cut(s) | 337, 452, 588, 1017 |
| LmnI | GCTCC | 2 cut(s) | 532, 720 |
| Lsp1109I | GCAGC | 6 cut(s) | 101, 196, 217, 275, 278, 665 |
| MaeI | CTAG | 4 cut(s) | 303, 378, 419, 812 |
| MaeII | ACGT | 1 cut(s) | 609 |
| MaeIII | GTNAC | 2 cut(s) | 53, 791 |
| MalI | GATC | 4 cut(s) | 339, 454, 590, 1019 |
| MboI | GATC | 4 cut(s) | 337, 452, 588, 1017 |
| MboII | GAAGA | 3 cut(s) | 749, 752, 782 |
| MfeI | CAATTG | 1 cut(s) | 146 |
| MhlI | GDGCHC | 1 cut(s) | 519 |
| MluCI | AATT | 3 cut(s) | 146, 902, 1093 |
| MlyI | GAGTC | 4 cut(s) | 551, 737, 788, 940 |
| MmeI | TCCRAC | 2 cut(s) | 84, 144 |
| MnlI | CCTC | 8 cut(s) | 289, 443, 471, 556, 602, 655, 842, 936 |
| MseI | TTAA | 2 cut(s) | 888, 896 |
| MslI | CAYNNNNRTG | 4 cut(s) | 689, 705, 926, 1079 |
| MspR9I | CCNGG | 3 cut(s) | 133, 581, 605 |
| MunI | CAATTG | 1 cut(s) | 146 |
| MvaI | CCWGG | 3 cut(s) | 133, 581, 605 |
| MvnI | CGCG | 2 cut(s) | 274, 276 |
| NdeI | CATATG | 1 cut(s) | 702 |
| NdeII | GATC | 4 cut(s) | 337, 452, 588, 1017 |
| NlaIII | CATG | 1 cut(s) | 1051 |
| NmuCI | GTSAC | 1 cut(s) | 791 |
| OliI | CACNNNNGTG | 1 cut(s) | 926 |
| PaqCI | CACCTGC | 1 cut(s) | 357 |
| PauI | GCGCGC | 1 cut(s) | 274 |
| PfeI | GAWTC | 5 cut(s) | 24, 165, 576, 710, 996 |
| PfoI | TCCNGGA | 1 cut(s) | 579 |
| PkrI | GCNGC | 6 cut(s) | 91, 186, 207, 265, 268, 655 |
| PleI | GAGTC | 4 cut(s) | 550, 737, 788, 940 |
| PpsI | GAGTC | 4 cut(s) | 550, 737, 788, 940 |
| PsiI | TTATAA | 1 cut(s) | 330 |
| Psp6I | CCWGG | 3 cut(s) | 131, 579, 603 |
| PspFI | CCCAGC | 1 cut(s) | 244 |
| PspGI | CCWGG | 3 cut(s) | 131, 579, 603 |
| PstI | CTGCAG | 1 cut(s) | 1012 |
| PteI | GCGCGC | 1 cut(s) | 274 |
| RseI | CAYNNNNRTG | 4 cut(s) | 689, 705, 926, 1079 |
| SaqAI | TTAA | 2 cut(s) | 888, 896 |
| SatI | GCNGC | 6 cut(s) | 90, 185, 206, 264, 267, 654 |
| Sau3AI | GATC | 4 cut(s) | 337, 452, 588, 1017 |
| SchI | GAGTC | 4 cut(s) | 551, 737, 788, 940 |
| ScrFI | CCNGG | 3 cut(s) | 133, 581, 605 |
| SduI | GDGCHC | 1 cut(s) | 519 |
| SfcI | CTRYAG | 2 cut(s) | 403, 1008 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 689, 705, 926, 1079 |
| SmlI | CTYRAG | 2 cut(s) | 563, 593 |
| SmoI | CTYRAG | 2 cut(s) | 563, 593 |
| Sse9I | AATT | 3 cut(s) | 146, 902, 1093 |
| SsiI | CCGC | 2 cut(s) | 835, 909 |
| SspMI | CTAG | 4 cut(s) | 303, 378, 419, 812 |
| StyD4I | CCNGG | 3 cut(s) | 131, 579, 603 |
| StyI | CCWWGG | 2 cut(s) | 418, 657 |
| TaaI | ACNGT | 4 cut(s) | 214, 236, 504, 619 |
| TaiI | ACGT | 1 cut(s) | 612 |
| TaqI | TCGA | 6 cut(s) | 128, 168, 340, 455, 994, 999 |
| TasI | AATT | 3 cut(s) | 146, 902, 1093 |
| TfiI | GAWTC | 5 cut(s) | 24, 165, 576, 710, 996 |
| Tru1I | TTAA | 2 cut(s) | 888, 896 |
| Tru9I | TTAA | 2 cut(s) | 888, 896 |
| TscAI | CASTG | 1 cut(s) | 241 |
| TseFI | GTSAC | 1 cut(s) | 791 |
| TseI | GCWGC | 6 cut(s) | 89, 184, 205, 263, 266, 653 |
| Tsp45I | GTSAC | 1 cut(s) | 791 |
| TspDTI | ATGAA | 3 cut(s) | 380, 746, 1064 |
| TspGWI | ACGGA | 1 cut(s) | 779 |
| TspRI | CASTG | 1 cut(s) | 241 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 108, 376 |
| XapI | RAATTY | 1 cut(s) | 902 |
| XmaJI | CCTAGG | 1 cut(s) | 418 |
| XmiI | GTMKAC | 1 cut(s) | 286 |
| XspI | CTAG | 4 cut(s) | 303, 378, 419, 812 |