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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 154 |
| AclWI | GGATC | 2 cut(s) | 344, 414 |
| AcsI | RAATTY | 1 cut(s) | 221 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 473 |
| AgsI | TTSAA | 1 cut(s) | 169 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 1 cut(s) | 365 |
| AluI | AGCT | 1 cut(s) | 365 |
| Alw26I | GTCTC | 1 cut(s) | 289 |
| AlwI | GGATC | 2 cut(s) | 344, 414 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApoI | RAATTY | 1 cut(s) | 221 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 380, 412 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 198 |
| AspLEI | GCGC | 1 cut(s) | 480 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 466 |
| BbsI | GAAGAC | 1 cut(s) | 269 |
| BccI | CCATC | 2 cut(s) | 289, 327 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 289 |
| BfaI | CTAG | 2 cut(s) | 107, 126 |
| BfmI | CTRYAG | 1 cut(s) | 327 |
| BfoI | RGCGCY | 1 cut(s) | 481 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 269 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaJI | CCNNGG | 1 cut(s) | 423 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 473 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 423 |
| BseGI | GGATG | 1 cut(s) | 338 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 473 |
| BseMII | CTCAG | 1 cut(s) | 204 |
| BseSI | GKGCMC | 1 cut(s) | 466 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 473 |
| BsmAI | GTCTC | 1 cut(s) | 289 |
| BsmBI | CGTCTC | 1 cut(s) | 289 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 466 |
| Bsp143I | GATC | 2 cut(s) | 336, 419 |
| BspACI | CCGC | 1 cut(s) | 154 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 203 |
| BspHI | TCATGA | 1 cut(s) | 349 |
| BspPI | GGATC | 2 cut(s) | 344, 414 |
| BssECI | CCNNGG | 1 cut(s) | 423 |
| BssMI | GATC | 2 cut(s) | 336, 419 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 3 cut(s) | 50, 145, 328 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 3 cut(s) | 190, 303, 468 |
| BstDSI | CCRYGG | 1 cut(s) | 423 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 471 |
| BstF5I | GGATG | 1 cut(s) | 338 |
| BstH2I | RGCGCY | 1 cut(s) | 481 |
| BstHHI | GCGC | 1 cut(s) | 480 |
| BstKTI | GATC | 2 cut(s) | 339, 422 |
| BstMAI | GTCTC | 1 cut(s) | 289 |
| BstMBI | GATC | 2 cut(s) | 336, 419 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 327 |
| BstSLI | GKGCMC | 1 cut(s) | 466 |
| BstV2I | GAAGAC | 1 cut(s) | 269 |
| BstX2I | RGATCY | 1 cut(s) | 419 |
| BstYI | RGATCY | 1 cut(s) | 419 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 423 |
| BtsCI | GGATG | 1 cut(s) | 338 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 1 cut(s) | 349 |
| CfoI | GCGC | 1 cut(s) | 480 |
| CviAII | CATG | 2 cut(s) | 350, 386 |
| CviJI | RGCY | 5 cut(s) | 81, 95, 124, 129, 365 |
| CviKI_1 | RGCY | 5 cut(s) | 81, 95, 124, 129, 365 |
| DdeI | CTNAG | 3 cut(s) | 190, 303, 468 |
| DpnI | GATC | 2 cut(s) | 338, 421 |
| DpnII | GATC | 2 cut(s) | 336, 419 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 471 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| Esp3I | CGTCTC | 1 cut(s) | 289 |
| FaeI | CATG | 2 cut(s) | 353, 389 |
| FaiI | YATR | 7 cut(s) | 17, 351, 368, 387, 411, 438, 456 |
| FatI | CATG | 2 cut(s) | 349, 385 |
| FokI | GGATG | 1 cut(s) | 345 |
| FspBI | CTAG | 2 cut(s) | 107, 126 |
| GlaI | GCGC | 1 cut(s) | 479 |
| HaeII | RGCGCY | 1 cut(s) | 481 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HhaI | GCGC | 1 cut(s) | 480 |
| Hin1II | CATG | 2 cut(s) | 353, 389 |
| Hin6I | GCGC | 1 cut(s) | 478 |
| HinP1I | GCGC | 1 cut(s) | 478 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 194, 265, 446 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 2 cut(s) | 193, 249 |
| Hpy188III | TCNNGA | 7 cut(s) | 71, 119, 169, 179, 350, 417, 443 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| HpyAV | CCTTC | 1 cut(s) | 286 |
| HpyCH4III | ACNGT | 3 cut(s) | 50, 145, 328 |
| HpyF3I | CTNAG | 3 cut(s) | 190, 303, 468 |
| Hsp92II | CATG | 2 cut(s) | 353, 389 |
| HspAI | GCGC | 1 cut(s) | 478 |
| Kzo9I | GATC | 2 cut(s) | 336, 419 |
| LmnI | GCTCC | 1 cut(s) | 362 |
| LpnPI | CCDG | 6 cut(s) | 23, 46, 95, 116, 143, 456 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 107, 126 |
| MaeIII | GTNAC | 2 cut(s) | 5, 322 |
| MalI | GATC | 2 cut(s) | 338, 421 |
| MboI | GATC | 2 cut(s) | 336, 419 |
| MboII | GAAGA | 1 cut(s) | 274 |
| MflI | RGATCY | 1 cut(s) | 419 |
| MhlI | GDGCHC | 1 cut(s) | 466 |
| MluCI | AATT | 4 cut(s) | 221, 315, 412, 451 |
| MlyI | GAGTC | 2 cut(s) | 111, 259 |
| MnlI | CCTC | 4 cut(s) | 127, 161, 290, 467 |
| MroXI | GAANNNNTTC | 1 cut(s) | 198 |
| MseI | TTAA | 2 cut(s) | 207, 215 |
| MslI | CAYNNNNRTG | 1 cut(s) | 398 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| NdeII | GATC | 2 cut(s) | 336, 419 |
| NlaIII | CATG | 2 cut(s) | 353, 389 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 349 |
| PdmI | GAANNNNTTC | 1 cut(s) | 198 |
| PfeI | GAWTC | 3 cut(s) | 115, 194, 446 |
| PleI | GAGTC | 2 cut(s) | 110, 259 |
| PpsI | GAGTC | 2 cut(s) | 110, 259 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PsuI | RGATCY | 1 cut(s) | 419 |
| RseI | CAYNNNNRTG | 1 cut(s) | 398 |
| SaqAI | TTAA | 2 cut(s) | 207, 215 |
| Sau3AI | GATC | 2 cut(s) | 336, 419 |
| SchI | GAGTC | 2 cut(s) | 111, 259 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 466 |
| SetI | ASST | 8 cut(s) | 12, 65, 138, 153, 278, 347, 367, 410 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 327 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 398 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 4 cut(s) | 221, 315, 412, 451 |
| SsiI | CCGC | 1 cut(s) | 154 |
| SspMI | CTAG | 2 cut(s) | 107, 126 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 3 cut(s) | 50, 145, 328 |
| TaqI | TCGA | 3 cut(s) | 120, 313, 416 |
| TasI | AATT | 4 cut(s) | 221, 315, 412, 451 |
| TfiI | GAWTC | 3 cut(s) | 115, 194, 446 |
| Tru1I | TTAA | 2 cut(s) | 207, 215 |
| Tru9I | TTAA | 2 cut(s) | 207, 215 |
| TspDTI | ATGAA | 3 cut(s) | 338, 366, 383 |
| TspGWI | ACGGA | 1 cut(s) | 412 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 471 |
| XapI | RAATTY | 1 cut(s) | 221 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 198 |
| XspI | CTAG | 2 cut(s) | 107, 126 |