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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AatII | GACGTC | 1 cut(s) | 111 |
| Acc36I | ACCTGC | 1 cut(s) | 333 |
| AccB1I | GGYRCC | 3 cut(s) | 419, 440, 461 |
| AciI | CCGC | 3 cut(s) | 100, 319, 340 |
| AcvI | CACGTG | 2 cut(s) | 362, 380 |
| AcyI | GRCGYC | 2 cut(s) | 108, 441 |
| AdeI | CACNNNGTG | 2 cut(s) | 365, 491 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 257, 258, 328, 381, 475 |
| AflII | CTTAAG | 1 cut(s) | 278 |
| AflIII | ACRYGT | 2 cut(s) | 359, 377 |
| AgsI | TTSAA | 1 cut(s) | 204 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AjnI | CCWGG | 1 cut(s) | 403 |
| AluBI | AGCT | 2 cut(s) | 40, 164 |
| AluI | AGCT | 2 cut(s) | 40, 164 |
| Alw21I | GWGCWC | 1 cut(s) | 496 |
| Alw44I | GTGCAC | 1 cut(s) | 492 |
| AoxI | GGCC | 1 cut(s) | 206 |
| ApaLI | GTGCAC | 1 cut(s) | 492 |
| AspA2I | CCTAGG | 1 cut(s) | 473 |
| AspLEI | GCGC | 2 cut(s) | 264, 443 |
| AsuHPI | GGTGA | 1 cut(s) | 362 |
| AvrII | CCTAGG | 1 cut(s) | 473 |
| BaeGI | GKGCMC | 1 cut(s) | 496 |
| BanI | GGYRCC | 3 cut(s) | 419, 440, 461 |
| BauI | CACGAG | 3 cut(s) | 127, 185, 429 |
| BbrPI | CACGTG | 2 cut(s) | 362, 380 |
| Bbv12I | GWGCWC | 1 cut(s) | 496 |
| BccI | CCATC | 1 cut(s) | 68 |
| BciT130I | CCWGG | 1 cut(s) | 405 |
| BciVI | GTATCC | 2 cut(s) | 349, 410 |
| BfaI | CTAG | 1 cut(s) | 474 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BfoI | RGCGCY | 1 cut(s) | 444 |
| BfrI | CTTAAG | 1 cut(s) | 278 |
| BfuAI | ACCTGC | 1 cut(s) | 333 |
| BfuI | GTATCC | 2 cut(s) | 349, 410 |
| BlnI | CCTAGG | 1 cut(s) | 473 |
| Bme1390I | CCNGG | 1 cut(s) | 405 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmiI | GGNNCC | 4 cut(s) | 275, 421, 442, 463 |
| BmrFI | CCNGG | 1 cut(s) | 405 |
| BsaAI | YACGTR | 2 cut(s) | 362, 380 |
| BsaHI | GRCGYC | 2 cut(s) | 108, 441 |
| BsaJI | CCNNGG | 4 cut(s) | 403, 423, 444, 473 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 376, 406, 454, 484 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 257, 258, 328, 381, 475 |
| Bse3DI | GCAATG | 1 cut(s) | 271 |
| BseBI | CCWGG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 4 cut(s) | 403, 423, 444, 473 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 257, 258, 328, 381, 475 |
| BseMI | GCAATG | 1 cut(s) | 271 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseSI | GKGCMC | 1 cut(s) | 496 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BshNI | GGYRCC | 3 cut(s) | 419, 440, 461 |
| BsiHKAI | GWGCWC | 1 cut(s) | 496 |
| BslFI | GGGAC | 1 cut(s) | 312 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 257, 258, 328, 381, 475 |
| BsmFI | GGGAC | 1 cut(s) | 312 |
| BsnI | GGCC | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 1 cut(s) | 496 |
| Bsp143I | GATC | 1 cut(s) | 123 |
| Bsp19I | CCATGG | 2 cut(s) | 423, 444 |
| BspACI | CCGC | 3 cut(s) | 100, 319, 340 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 4 cut(s) | 275, 421, 442, 463 |
| BspMI | ACCTGC | 1 cut(s) | 333 |
| BspT107I | GGYRCC | 3 cut(s) | 419, 440, 461 |
| BspTI | CTTAAG | 1 cut(s) | 278 |
| BsrDI | GCAATG | 1 cut(s) | 271 |
| BssECI | CCNNGG | 4 cut(s) | 403, 423, 444, 473 |
| BssMI | GATC | 1 cut(s) | 123 |
| BssNI | GRCGYC | 2 cut(s) | 108, 441 |
| BssSI | CACGAG | 3 cut(s) | 127, 185, 429 |
| BssT1I | CCWWGG | 3 cut(s) | 423, 444, 473 |
| Bst2BI | CACGAG | 3 cut(s) | 127, 185, 429 |
| Bst2UI | CCWGG | 1 cut(s) | 405 |
| BstACI | GRCGYC | 2 cut(s) | 108, 441 |
| BstAFI | CTTAAG | 1 cut(s) | 278 |
| BstBAI | YACGTR | 2 cut(s) | 362, 380 |
| BstDEI | CTNAG | 2 cut(s) | 165, 498 |
| BstDSI | CCRYGG | 2 cut(s) | 423, 444 |
| BstH2I | RGCGCY | 1 cut(s) | 444 |
| BstHHI | GCGC | 2 cut(s) | 264, 443 |
| BstKTI | GATC | 1 cut(s) | 126 |
| BstMBI | GATC | 1 cut(s) | 123 |
| BstNI | CCWGG | 1 cut(s) | 405 |
| BstSCI | CCNGG | 1 cut(s) | 403 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstSLI | GKGCMC | 1 cut(s) | 496 |
| BsuI | GTATCC | 2 cut(s) | 349, 410 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BtgI | CCRYGG | 2 cut(s) | 423, 444 |
| BtsIMutI | CAGTG | 1 cut(s) | 102 |
| BveI | ACCTGC | 1 cut(s) | 333 |
| CciI | TCATGA | 1 cut(s) | 229 |
| CfoI | GCGC | 2 cut(s) | 264, 443 |
| CviAII | CATG | 4 cut(s) | 173, 230, 424, 445 |
| CviJI | RGCY | 5 cut(s) | 40, 77, 164, 208, 428 |
| CviKI_1 | RGCY | 5 cut(s) | 40, 77, 164, 208, 428 |
| DdeI | CTNAG | 2 cut(s) | 165, 498 |
| DinI | GGCGCC | 1 cut(s) | 442 |
| DpnI | GATC | 1 cut(s) | 125 |
| DpnII | GATC | 1 cut(s) | 123 |
| DraIII | CACNNNGTG | 2 cut(s) | 365, 491 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 3 cut(s) | 423, 444, 473 |
| Eco147I | AGGCCT | 1 cut(s) | 208 |
| Eco72I | CACGTG | 2 cut(s) | 362, 380 |
| EcoRII | CCWGG | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 3 cut(s) | 423, 444, 473 |
| EgeI | GGCGCC | 1 cut(s) | 442 |
| EheI | GGCGCC | 1 cut(s) | 442 |
| ErhI | CCWWGG | 3 cut(s) | 423, 444, 473 |
| FaeI | CATG | 4 cut(s) | 176, 233, 427, 448 |
| FaqI | GGGAC | 1 cut(s) | 312 |
| FatI | CATG | 4 cut(s) | 172, 229, 423, 444 |
| FauNDI | CATATG | 1 cut(s) | 303 |
| FspBI | CTAG | 1 cut(s) | 474 |
| GlaI | GCGC | 2 cut(s) | 263, 442 |
| HaeII | RGCGCY | 1 cut(s) | 444 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| HhaI | GCGC | 2 cut(s) | 264, 443 |
| Hin1I | GRCGYC | 2 cut(s) | 108, 441 |
| Hin1II | CATG | 4 cut(s) | 176, 233, 427, 448 |
| Hin6I | GCGC | 2 cut(s) | 262, 441 |
| HinP1I | GCGC | 2 cut(s) | 262, 441 |
| HinfI | GANTC | 1 cut(s) | 307 |
| HphI | GGTGA | 1 cut(s) | 362 |
| Hpy166II | GTNNAC | 2 cut(s) | 17, 494 |
| Hpy188III | TCNNGA | 3 cut(s) | 127, 187, 230 |
| Hpy8I | GTNNAC | 2 cut(s) | 17, 494 |
| HpyAV | CCTTC | 1 cut(s) | 326 |
| HpyCH4IV | ACGT | 4 cut(s) | 108, 361, 379, 490 |
| HpyCH4V | TGCA | 2 cut(s) | 248, 494 |
| HpyF3I | CTNAG | 2 cut(s) | 165, 498 |
| HpySE526I | ACGT | 4 cut(s) | 108, 361, 379, 490 |
| Hsp92I | GRCGYC | 2 cut(s) | 108, 441 |
| Hsp92II | CATG | 4 cut(s) | 176, 233, 427, 448 |
| HspAI | GCGC | 2 cut(s) | 262, 441 |
| KasI | GGCGCC | 1 cut(s) | 440 |
| Kzo9I | GATC | 1 cut(s) | 123 |
| LpnPI | CCDG | 5 cut(s) | 36, 102, 328, 390, 417 |
| MaeI | CTAG | 1 cut(s) | 474 |
| MaeII | ACGT | 4 cut(s) | 108, 361, 379, 490 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 1 cut(s) | 125 |
| MboI | GATC | 1 cut(s) | 123 |
| MboII | GAAGA | 1 cut(s) | 55 |
| MhlI | GDGCHC | 1 cut(s) | 496 |
| MluCI | AATT | 4 cut(s) | 42, 193, 199, 238 |
| Mly113I | GGCGCC | 1 cut(s) | 441 |
| MlyI | GAGTC | 1 cut(s) | 316 |
| MnlI | CCTC | 9 cut(s) | 123, 183, 226, 251, 289, 346, 380, 431, 480 |
| MseI | TTAA | 1 cut(s) | 279 |
| MslI | CAYNNNNRTG | 1 cut(s) | 185 |
| MspCI | CTTAAG | 1 cut(s) | 278 |
| MspR9I | CCNGG | 1 cut(s) | 405 |
| MvaI | CCWGG | 1 cut(s) | 405 |
| NarI | GGCGCC | 1 cut(s) | 441 |
| NcoI | CCATGG | 2 cut(s) | 423, 444 |
| NdeI | CATATG | 1 cut(s) | 303 |
| NdeII | GATC | 1 cut(s) | 123 |
| NlaIII | CATG | 4 cut(s) | 176, 233, 427, 448 |
| NlaIV | GGNNCC | 4 cut(s) | 275, 421, 442, 463 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PceI | AGGCCT | 1 cut(s) | 208 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 487 |
| PleI | GAGTC | 1 cut(s) | 315 |
| PluTI | GGCGCC | 1 cut(s) | 444 |
| PmaCI | CACGTG | 2 cut(s) | 362, 380 |
| PmlI | CACGTG | 2 cut(s) | 362, 380 |
| PpsI | GAGTC | 1 cut(s) | 315 |
| Ppu21I | YACGTR | 2 cut(s) | 362, 380 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| Psp6I | CCWGG | 1 cut(s) | 403 |
| PspCI | CACGTG | 2 cut(s) | 362, 380 |
| PspGI | CCWGG | 1 cut(s) | 403 |
| PspN4I | GGNNCC | 4 cut(s) | 275, 421, 442, 463 |
| RseI | CAYNNNNRTG | 1 cut(s) | 185 |
| SaqAI | TTAA | 1 cut(s) | 279 |
| Sau3AI | GATC | 1 cut(s) | 123 |
| SchI | GAGTC | 1 cut(s) | 316 |
| ScrFI | CCNGG | 1 cut(s) | 405 |
| SduI | GDGCHC | 1 cut(s) | 496 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SfoI | GGCGCC | 1 cut(s) | 442 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 185 |
| SmlI | CTYRAG | 1 cut(s) | 278 |
| SmoI | CTYRAG | 1 cut(s) | 278 |
| Sse9I | AATT | 4 cut(s) | 42, 193, 199, 238 |
| SseBI | AGGCCT | 1 cut(s) | 208 |
| SsiI | CCGC | 3 cut(s) | 100, 319, 340 |
| SspDI | GGCGCC | 1 cut(s) | 440 |
| SspMI | CTAG | 1 cut(s) | 474 |
| StuI | AGGCCT | 1 cut(s) | 208 |
| StyD4I | CCNGG | 1 cut(s) | 403 |
| StyI | CCWWGG | 3 cut(s) | 423, 444, 473 |
| TaiI | ACGT | 4 cut(s) | 111, 364, 382, 493 |
| TasI | AATT | 4 cut(s) | 42, 193, 199, 238 |
| Tru1I | TTAA | 1 cut(s) | 279 |
| Tru9I | TTAA | 1 cut(s) | 279 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 2 cut(s) | 125, 218 |
| TspRI | CASTG | 1 cut(s) | 109 |
| Vha464I | CTTAAG | 1 cut(s) | 278 |
| VneI | GTGCAC | 1 cut(s) | 492 |
| XmaJI | CCTAGG | 1 cut(s) | 473 |
| XspI | CTAG | 1 cut(s) | 474 |
| ZraI | GACGTC | 1 cut(s) | 109 |